Wall clock time and date at job start Tue Mar 31 2020 12:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00188 * 2 1 4 4 N 1.46500 * 109.47090 * 124.74699 * 3 2 1 5 5 C 1.46502 * 119.99761 * 86.47041 * 4 3 2 6 6 C 1.50703 * 109.47134 * 95.63831 * 5 4 3 7 7 H 1.08000 * 119.99647 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99971 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00210 * 0.02562 * 8 6 5 10 10 Si 1.86810 * 119.99790 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46898 * 60.00196 * 10 8 6 12 12 H 1.48496 * 109.46710 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47003 * 299.99848 * 10 8 6 14 14 C 1.34774 * 120.00371 * 266.47092 * 4 3 2 15 15 O 1.21280 * 119.99737 * 356.02773 * 14 4 3 16 16 C 1.50705 * 120.00284 * 176.02383 * 14 4 3 17 17 H 1.09004 * 109.46740 * 332.56371 * 16 14 4 18 18 C 1.52996 * 109.47008 * 92.55987 * 16 14 4 19 19 C 1.50692 * 109.47061 * 212.56420 * 16 14 4 20 20 C 1.38260 * 120.00239 * 299.99681 * 19 16 14 21 21 C 1.38216 * 120.00569 * 179.97438 * 20 19 16 22 22 C 1.38259 * 119.99434 * 0.02562 * 21 20 19 23 23 C 1.38212 * 120.00203 * 0.02562 * 22 21 20 24 24 N 1.48023 * 119.99906 * 180.02562 * 23 22 21 25 25 O 1.21799 * 119.99770 * 0.02562 * 24 23 22 26 26 O 1.21796 * 120.00035 * 179.97438 * 24 23 22 27 27 C 1.38214 * 120.00440 * 119.72697 * 19 16 14 28 28 H 1.07993 * 120.00128 * 185.09466 * 1 2 3 29 29 H 1.08001 * 119.99881 * 5.10270 * 1 2 3 30 30 H 1.08001 * 120.00074 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.46943 * 4.75450 * 3 2 1 32 32 H 1.08993 * 109.47156 * 244.74574 * 3 2 1 33 33 H 1.09002 * 109.47409 * 215.63248 * 5 4 3 34 34 H 1.09000 * 109.47533 * 335.63777 * 5 4 3 35 35 H 0.97007 * 119.99936 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.47528 * 306.21336 * 18 16 14 37 37 H 1.09008 * 109.46908 * 66.21022 * 18 16 14 38 38 H 1.08994 * 109.47340 * 186.20842 * 18 16 14 39 39 H 1.08008 * 119.99628 * 0.02562 * 20 19 16 40 40 H 1.07989 * 120.00426 * 180.02562 * 21 20 19 41 41 H 1.08003 * 119.99849 * 180.02562 * 22 21 20 42 42 H 1.08003 * 119.99593 * 0.02562 * 27 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9895 1.3343 1.1349 5 6 4.3296 0.7575 1.0020 6 6 5.3123 1.8452 0.6524 7 1 4.9725 2.8642 0.5401 8 6 6.6451 1.5395 0.4760 9 7 7.0587 0.2986 0.6123 10 14 7.8631 2.8877 0.0420 11 1 7.8694 3.9135 1.1158 12 1 9.2214 2.3030 -0.0926 13 1 7.4666 3.5182 -1.2427 14 6 2.6085 1.8919 2.3013 15 8 1.5269 2.4333 2.3899 16 6 3.5266 1.8426 3.4954 17 1 4.1717 0.9671 3.4218 18 6 4.3861 3.1079 3.5305 19 6 2.7061 1.7576 4.7566 20 6 1.8086 2.7625 5.0666 21 6 1.0557 2.6843 6.2230 22 6 1.2004 1.6012 7.0701 23 6 2.0984 0.5971 6.7608 24 7 2.2529 -0.5627 7.6674 25 8 1.5884 -0.6324 8.6858 26 8 3.0439 -1.4478 7.3946 27 6 2.8467 0.6722 5.6007 28 1 -0.5400 -0.9315 0.0831 29 1 -0.5400 0.9316 -0.0832 30 1 1.8500 -0.9353 0.0004 31 1 1.3583 2.1318 0.0852 32 1 2.6249 1.4005 -0.9294 33 1 4.6208 0.2940 1.9446 34 1 4.3247 0.0051 0.2133 35 1 7.9964 0.0835 0.4878 36 1 4.8955 3.2277 2.5743 37 1 3.7503 3.9740 3.7145 38 1 5.1247 3.0234 4.3275 39 1 1.6953 3.6084 4.4046 40 1 0.3544 3.4690 6.4649 41 1 0.6118 1.5398 7.9735 42 1 3.5449 -0.1148 5.3565 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519126178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:03 Heat of formation + Delta-G solvation = -8.031840 kcal Electronic energy + Delta-G solvation = -26789.520410 eV Core-core repulsion = 22930.993398 eV Total energy + Delta-G solvation = -3858.527012 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.29192 -41.53441 -40.04361 -37.71344 -37.14060 -35.73481 -34.81640 -33.83373 -32.84512 -30.92767 -29.32176 -27.69974 -27.45647 -25.36580 -24.95106 -23.69496 -22.90253 -21.02774 -20.42607 -19.78722 -19.29293 -18.65262 -18.43095 -18.24361 -17.52246 -17.24395 -16.49659 -16.26223 -16.05711 -15.67096 -15.29412 -14.83591 -14.67013 -14.42816 -14.23378 -13.98212 -13.65943 -13.35184 -13.19011 -13.11374 -12.98313 -12.76841 -12.72905 -12.67889 -12.54697 -12.33642 -12.28317 -12.19290 -11.98358 -11.90258 -11.66526 -10.82557 -10.55889 -10.52725 -10.37604 -10.09604 -9.50677 -8.18865 -6.31855 -1.22466 -0.07714 0.32168 0.34452 1.22935 1.44117 1.46164 1.52290 1.70240 2.21378 2.39631 2.52935 3.12597 3.25577 3.47031 3.62690 3.85448 3.91597 3.96268 3.99234 4.01827 4.21550 4.32130 4.34359 4.50604 4.62581 4.71062 4.77898 4.82083 4.90026 4.92169 4.99534 5.02886 5.11457 5.21828 5.30180 5.39250 5.51867 5.63611 5.64552 5.75711 5.84329 6.05754 6.47297 6.52955 6.81051 7.24903 7.40432 8.86830 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.004257 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.071628 B = 6576.155913 C = 7574.708670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.184 4.184 3 C 0.141 3.859 4 N -0.593 5.593 5 C 0.249 3.751 6 C -0.535 4.535 7 H 0.060 0.940 8 C 0.026 3.974 9 N -0.920 5.920 10 Si 0.948 3.052 11 H -0.265 1.265 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.525 3.475 15 O -0.579 6.579 16 C -0.064 4.064 17 H 0.096 0.904 18 C -0.135 4.135 19 C -0.073 4.073 20 C -0.030 4.030 21 C -0.106 4.106 22 C -0.050 4.050 23 C -0.064 4.064 24 N 0.033 4.967 25 O -0.153 6.153 26 O -0.208 6.208 27 C -0.059 4.059 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.028 0.972 34 H 0.020 0.980 35 H 0.267 0.733 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.152 0.848 40 H 0.188 0.812 41 H 0.175 0.825 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.904 5.451 7.453 14.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.203 4.203 3 C 0.019 3.981 4 N -0.321 5.321 5 C 0.129 3.871 6 C -0.574 4.574 7 H 0.079 0.921 8 C -0.175 4.175 9 N -0.559 5.559 10 Si 0.774 3.226 11 H -0.190 1.190 12 H -0.214 1.214 13 H -0.199 1.199 14 C 0.314 3.686 15 O -0.461 6.461 16 C -0.085 4.085 17 H 0.114 0.886 18 C -0.193 4.193 19 C -0.075 4.075 20 C -0.049 4.049 21 C -0.124 4.124 22 C -0.069 4.069 23 C -0.147 4.147 24 N 0.548 4.452 25 O -0.374 6.374 26 O -0.413 6.413 27 C -0.079 4.079 28 H 0.132 0.868 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.046 0.954 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.169 0.831 40 H 0.205 0.795 41 H 0.193 0.807 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.286 6.106 6.983 14.609 hybrid contribution 1.342 -0.432 -0.401 1.465 sum -9.944 5.674 6.583 13.207 Atomic orbital electron populations 1.23971 0.95141 1.02798 0.98384 1.23268 0.96801 0.98384 1.01873 1.20462 0.92310 0.96004 0.89346 1.48161 1.15683 1.56900 1.11396 1.19163 0.77282 0.93580 0.97099 1.21542 0.92655 0.94792 1.48388 0.92140 1.25566 0.99834 0.97162 0.94889 1.70001 1.16869 1.19299 1.49721 0.85749 0.78015 0.79700 0.79137 1.19000 1.21355 1.19933 1.20432 0.86413 0.77287 0.84495 1.90543 1.24287 1.46571 1.84662 1.20158 0.95783 1.03396 0.89165 0.88600 1.21791 0.99065 0.94051 1.04359 1.19529 0.98493 0.94256 0.95189 1.21829 0.90308 0.97574 0.95142 1.21618 1.00066 0.98177 0.92502 1.21412 0.93799 0.90479 1.01201 1.21159 1.08122 0.90621 0.94791 1.43888 0.98379 1.02046 1.00871 1.94458 1.43624 1.84182 1.15181 1.94565 1.33344 1.33440 1.79998 1.20918 0.97271 0.98408 0.91277 0.86829 0.87930 0.87941 0.90031 0.90191 0.95403 0.96142 0.92439 0.90910 0.91185 0.90820 0.83075 0.79508 0.80719 0.83953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.27 14.31 67.78 0.97 -3.30 16 2 C -0.18 -5.66 9.85 25.65 0.25 -5.40 16 3 C 0.14 4.86 5.89 85.63 0.50 5.36 16 4 N -0.59 -23.03 2.45 -830.50 -2.04 -25.07 16 5 C 0.25 11.12 4.98 85.63 0.43 11.55 16 6 C -0.54 -25.44 7.54 25.60 0.19 -25.24 16 7 H 0.06 2.87 7.24 -2.91 -0.02 2.85 16 8 C 0.03 1.29 5.46 84.66 0.46 1.75 16 9 N -0.92 -48.61 13.29 21.45 0.28 -48.32 16 10 Si 0.95 39.37 29.54 68.60 2.03 41.40 16 11 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 12 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 13 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 14 C 0.53 19.46 6.64 87.66 0.58 20.04 16 15 O -0.58 -21.98 14.09 -3.03 -0.04 -22.02 16 16 C -0.06 -2.11 2.33 -12.29 -0.03 -2.14 16 17 H 0.10 3.47 5.62 -2.39 -0.01 3.46 16 18 C -0.14 -4.18 9.07 71.98 0.65 -3.52 16 19 C -0.07 -2.08 4.70 -19.87 -0.09 -2.17 16 20 C -0.03 -0.71 7.90 22.27 0.18 -0.53 16 21 C -0.11 -1.81 10.05 22.27 0.22 -1.58 16 22 C -0.05 -0.98 9.56 22.27 0.21 -0.77 16 23 C -0.06 -1.71 6.85 36.37 0.25 -1.46 16 24 N 0.03 1.02 4.45 -46.46 -0.21 0.81 16 25 O -0.15 -4.50 18.45 18.89 0.35 -4.15 16 26 O -0.21 -7.12 18.45 18.89 0.35 -6.77 16 27 C -0.06 -1.71 9.18 22.27 0.20 -1.50 16 28 H 0.11 2.47 8.06 -2.91 -0.02 2.44 16 29 H 0.10 2.50 7.86 -2.91 -0.02 2.48 16 30 H 0.10 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.08 2.76 6.93 -2.39 -0.02 2.74 16 32 H 0.08 2.76 8.10 -2.39 -0.02 2.74 16 33 H 0.03 1.31 5.93 -2.39 -0.01 1.29 16 34 H 0.02 0.98 8.03 -2.39 -0.02 0.96 16 35 H 0.27 13.56 8.31 -92.70 -0.77 12.78 16 36 H 0.07 2.65 5.55 -2.39 -0.01 2.64 16 37 H 0.07 1.87 7.19 -2.38 -0.02 1.85 16 38 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.15 3.49 6.69 -2.91 -0.02 3.48 16 40 H 0.19 1.67 8.06 -2.92 -0.02 1.64 16 41 H 0.18 2.54 7.61 -2.91 -0.02 2.52 16 42 H 0.14 4.26 7.50 -2.91 -0.02 4.24 16 Total: -1.00 -58.13 361.21 6.75 -51.38 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 1.04 Total: 21.67 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 4.99 Total: -8.92 kcal Atomic # 7 Polarization: -70.62 SS G_CDS: -1.96 Total: -72.58 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: 0.65 Total: -32.95 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -58.13 6.75 -51.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519126178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.352 kcal (2) G-P(sol) polarization free energy of solvation -58.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds