Wall clock time and date at job start Tue Mar 31 2020 13:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46855 * 2 1 4 4 C 1.46500 * 120.00247 * 277.52567 * 3 2 1 5 5 C 1.50700 * 109.47249 * 270.00118 * 4 3 2 6 6 H 1.08001 * 119.99994 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00118 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99876 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00183 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47082 * 90.00138 * 9 7 5 11 11 H 1.48499 * 109.47434 * 210.00572 * 9 7 5 12 12 H 1.48504 * 109.46867 * 330.00663 * 9 7 5 13 13 C 1.34779 * 120.00082 * 97.52650 * 3 2 1 14 14 O 1.21587 * 119.99970 * 185.79172 * 13 3 2 15 15 C 1.47612 * 119.99882 * 5.79455 * 13 3 2 16 16 C 1.39722 * 120.05175 * 314.13117 * 15 13 3 17 17 C 1.37848 * 120.10998 * 179.97438 * 16 15 13 18 18 C 1.38699 * 120.07101 * 0.25420 * 17 16 15 19 19 C 1.39678 * 120.10411 * 359.46304 * 18 17 16 20 20 C 1.38098 * 120.11488 * 0.55191 * 19 18 17 21 21 N 1.40274 * 119.24745 * 180.21854 * 19 18 17 22 22 C 1.46503 * 120.51481 * 195.82166 * 21 19 18 23 23 C 1.35079 * 118.96414 * 15.79652 * 21 19 18 24 24 O 1.21297 * 120.13626 * 181.63495 * 23 21 19 25 25 C 1.50751 * 119.72324 * 1.65876 * 23 21 19 26 26 O 1.35848 * 120.50357 * 180.35003 * 18 17 16 27 27 H 1.08999 * 109.47152 * 309.56619 * 1 2 3 28 28 H 1.09001 * 109.47161 * 69.57417 * 1 2 3 29 29 H 1.09001 * 109.46802 * 189.56948 * 1 2 3 30 30 H 1.09002 * 109.47552 * 240.00144 * 2 1 3 31 31 H 1.09003 * 109.47407 * 119.99893 * 2 1 3 32 32 H 1.09002 * 109.46922 * 30.00117 * 4 3 2 33 33 H 1.09003 * 109.47539 * 149.99898 * 4 3 2 34 34 H 0.97003 * 119.99994 * 179.97438 * 8 7 5 35 35 H 1.07996 * 119.94802 * 359.97438 * 16 15 13 36 36 H 1.07997 * 119.96723 * 179.97438 * 17 16 15 37 37 H 1.08003 * 120.14527 * 179.69266 * 20 19 18 38 38 H 1.08997 * 109.46848 * 90.00317 * 22 21 19 39 39 H 1.08999 * 109.46675 * 209.99784 * 22 21 19 40 40 H 1.08998 * 109.47169 * 329.99672 * 22 21 19 41 41 H 1.09002 * 109.44561 * 88.67587 * 25 23 21 42 42 H 1.09010 * 109.43847 * 208.59830 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1057 2.1273 -1.2578 5 6 3.4638 1.9136 -1.8752 6 1 4.1893 1.2853 -1.3800 7 6 3.7800 2.5203 -3.0722 8 7 2.8967 3.2858 -3.6750 9 14 5.4636 2.2560 -3.8372 10 1 5.4198 1.0728 -4.7335 11 1 5.8449 3.4577 -4.6219 12 1 6.4644 2.0274 -2.7642 13 6 2.3870 1.9657 1.1572 14 8 2.6917 3.1426 1.1737 15 6 2.4210 1.1768 2.4043 16 6 1.3552 0.3333 2.7280 17 6 1.3859 -0.4043 3.8922 18 6 2.4730 -0.3070 4.7481 19 6 3.5444 0.5299 4.4275 20 6 3.5198 1.2718 3.2630 21 7 4.6367 0.6111 5.3038 22 6 5.6011 1.7081 5.1908 23 6 4.7851 -0.3377 6.2538 24 8 5.7051 -0.2720 7.0416 25 6 3.8029 -1.4787 6.3305 26 8 2.5157 -1.0352 5.8941 27 1 -0.3633 0.6546 0.7922 28 1 -0.3633 0.3587 -0.9631 29 1 -0.3633 -1.0134 0.1708 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3353 1.7748 -1.9436 33 1 1.9590 3.1894 -1.0613 34 1 3.1194 3.7129 -4.5170 35 1 0.5059 0.2591 2.0651 36 1 0.5607 -1.0552 4.1403 37 1 4.3457 1.9228 3.0170 38 1 5.2769 2.5423 5.8129 39 1 6.5810 1.3660 5.5236 40 1 5.6629 2.0320 4.1519 41 1 4.1422 -2.2932 5.6905 42 1 3.7351 -1.8305 7.3600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528136186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:35 Heat of formation + Delta-G solvation = -53.253009 kcal Electronic energy + Delta-G solvation = -26872.688472 eV Core-core repulsion = 23012.200523 eV Total energy + Delta-G solvation = -3860.487949 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.77629 -39.79873 -38.77649 -37.43147 -35.90047 -35.41210 -32.87484 -31.00240 -30.58345 -29.86287 -29.56495 -27.47515 -26.27859 -24.05147 -23.27012 -23.03814 -22.15396 -20.35294 -19.39558 -18.38854 -17.49330 -17.45429 -16.51942 -16.31104 -16.05378 -15.75054 -15.31947 -15.04139 -14.74105 -14.64413 -14.41732 -13.96924 -13.85934 -13.76002 -13.58073 -12.91185 -12.74293 -12.51990 -12.37408 -12.33664 -12.06376 -11.66068 -11.58425 -11.33753 -11.20952 -10.91837 -10.87898 -10.65337 -10.46662 -10.21955 -10.16716 -9.70084 -9.16612 -8.83228 -8.48513 -8.04274 -7.75898 -6.09594 -4.14776 0.72923 1.00965 1.98073 2.23828 2.93944 3.15961 3.26427 3.33549 3.36883 3.58862 3.65039 3.91126 4.38449 4.42620 4.55993 4.68128 4.77019 4.92995 4.99045 5.05757 5.15418 5.22088 5.25364 5.30284 5.41880 5.49700 5.54421 5.61978 5.73584 5.92141 5.96389 6.06303 6.19241 6.25802 6.32294 6.47234 6.58869 7.00546 7.05001 7.38366 7.40958 7.45470 7.86528 8.16953 8.29521 8.80375 8.96289 9.50540 10.98469 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016163 B = 0.003652 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.890403 B = 7665.667642 C = 8725.206944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 N -0.586 5.586 4 C 0.245 3.755 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.548 3.452 14 O -0.534 6.534 15 C -0.101 4.101 16 C -0.095 4.095 17 C -0.113 4.113 18 C 0.087 3.913 19 C 0.085 3.915 20 C -0.075 4.075 21 N -0.550 5.550 22 C 0.074 3.926 23 C 0.486 3.514 24 O -0.515 6.515 25 C 0.052 3.948 26 O -0.302 6.302 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.154 0.846 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.108 -11.343 16.235 20.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.029 4.029 3 N -0.317 5.317 4 C 0.127 3.873 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.334 3.666 14 O -0.412 6.412 15 C -0.105 4.105 16 C -0.113 4.113 17 C -0.132 4.132 18 C 0.040 3.960 19 C -0.009 4.009 20 C -0.096 4.096 21 N -0.275 5.275 22 C -0.067 4.067 23 C 0.275 3.725 24 O -0.390 6.390 25 C -0.026 4.026 26 O -0.216 6.216 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.171 0.829 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.118 0.882 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.547 -10.599 16.638 19.891 hybrid contribution 1.220 -0.049 -0.637 1.377 sum -1.326 -10.648 16.001 19.266 Atomic orbital electron populations 1.22355 0.96629 1.01507 1.02832 1.21696 0.93696 0.84288 1.03262 1.48193 1.61702 1.13394 1.08383 1.19330 0.97108 0.92859 0.78044 1.21425 0.99486 1.30100 1.05850 0.92430 1.24921 0.97328 0.94839 0.96884 1.69926 1.34569 1.31209 1.17466 0.86505 0.84115 0.77672 0.79180 1.20595 1.21044 1.19929 1.18019 0.78663 0.86897 0.83003 1.90782 1.48987 1.15601 1.85814 1.20075 0.95219 0.98644 0.96553 1.21794 0.99079 0.94107 0.96366 1.20445 0.98229 1.02189 0.92292 1.18787 0.94982 0.94310 0.87878 1.17909 0.88761 1.01211 0.92987 1.20694 0.99097 0.98949 0.90889 1.45550 1.24970 1.26164 1.30842 1.21956 0.92527 0.88453 1.03799 1.21543 0.86726 0.84022 0.80234 1.90765 1.33094 1.75730 1.39394 1.23193 0.80654 0.94327 1.04380 1.86171 1.28907 1.68499 1.38038 0.92332 0.91554 0.91751 0.89999 0.90624 0.94693 0.93573 0.92645 0.82877 0.83827 0.83947 0.91231 0.89520 0.89520 0.88239 0.83767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 9.14 37.16 0.34 -1.77 16 2 C 0.09 1.42 5.59 -4.04 -0.02 1.39 16 3 N -0.59 -11.81 2.46 -176.26 -0.43 -12.24 16 4 C 0.25 6.16 5.22 -5.19 -0.03 6.14 16 5 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 9 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.55 11.12 7.26 -12.43 -0.09 11.03 16 14 O -0.53 -13.14 16.54 5.29 0.09 -13.05 16 15 C -0.10 -1.56 5.08 -104.95 -0.53 -2.10 16 16 C -0.09 -1.14 7.40 -39.17 -0.29 -1.43 16 17 C -0.11 -1.17 9.98 -39.55 -0.39 -1.56 16 18 C 0.09 1.01 6.46 -38.87 -0.25 0.76 16 19 C 0.09 1.09 6.38 -83.51 -0.53 0.56 16 20 C -0.08 -1.09 9.00 -39.06 -0.35 -1.44 16 21 N -0.55 -6.75 3.12 -120.60 -0.38 -7.12 16 22 C 0.07 0.79 10.23 59.85 0.61 1.40 16 23 C 0.49 5.80 7.67 -10.82 -0.08 5.72 16 24 O -0.51 -7.37 16.77 5.54 0.09 -7.28 16 25 C 0.05 0.45 7.17 36.03 0.26 0.71 16 26 O -0.30 -3.14 10.43 -19.26 -0.20 -3.34 16 27 H 0.06 0.68 6.32 -51.93 -0.33 0.35 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.29 8.13 -51.93 -0.42 0.86 16 31 H 0.08 0.97 5.10 -51.93 -0.26 0.71 16 32 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.05 1.32 7.35 -51.93 -0.38 0.94 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.15 1.65 3.70 -52.49 -0.19 1.46 16 36 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.14 2.08 6.11 -52.48 -0.32 1.76 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.90 7.49 -51.93 -0.39 0.51 16 40 H 0.09 0.88 5.95 -51.93 -0.31 0.57 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.14 0.88 8.14 -51.92 -0.42 0.45 16 LS Contribution 348.00 15.07 5.24 5.24 Total: -1.00 -34.26 348.00 -6.77 -41.03 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.11 Total: -0.58 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -1.79 Total: 6.18 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.07 Total: -44.53 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.02 Total: -23.67 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.26 -6.77 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528136186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.225 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds