Wall clock time and date at job start Tue Mar 31 2020 13:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46855 * 2 1 4 4 C 1.46500 * 120.00247 * 277.52567 * 3 2 1 5 5 C 1.50700 * 109.47249 * 270.00118 * 4 3 2 6 6 H 1.08001 * 119.99994 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00118 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99876 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00183 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47082 * 90.00138 * 9 7 5 11 11 H 1.48499 * 109.47434 * 210.00572 * 9 7 5 12 12 H 1.48504 * 109.46867 * 330.00663 * 9 7 5 13 13 C 1.34779 * 120.00082 * 97.52650 * 3 2 1 14 14 O 1.21587 * 119.99970 * 185.79172 * 13 3 2 15 15 C 1.47612 * 119.99882 * 5.79455 * 13 3 2 16 16 C 1.39722 * 120.05175 * 314.13117 * 15 13 3 17 17 C 1.37848 * 120.10998 * 179.97438 * 16 15 13 18 18 C 1.38699 * 120.07101 * 0.25420 * 17 16 15 19 19 C 1.39678 * 120.10411 * 359.46304 * 18 17 16 20 20 C 1.38098 * 120.11488 * 0.55191 * 19 18 17 21 21 N 1.40274 * 119.24745 * 180.21854 * 19 18 17 22 22 C 1.46503 * 120.51481 * 195.82166 * 21 19 18 23 23 C 1.35079 * 118.96414 * 15.79652 * 21 19 18 24 24 O 1.21297 * 120.13626 * 181.63495 * 23 21 19 25 25 C 1.50751 * 119.72324 * 1.65876 * 23 21 19 26 26 O 1.35848 * 120.50357 * 180.35003 * 18 17 16 27 27 H 1.08999 * 109.47152 * 309.56619 * 1 2 3 28 28 H 1.09001 * 109.47161 * 69.57417 * 1 2 3 29 29 H 1.09001 * 109.46802 * 189.56948 * 1 2 3 30 30 H 1.09002 * 109.47552 * 240.00144 * 2 1 3 31 31 H 1.09003 * 109.47407 * 119.99893 * 2 1 3 32 32 H 1.09002 * 109.46922 * 30.00117 * 4 3 2 33 33 H 1.09003 * 109.47539 * 149.99898 * 4 3 2 34 34 H 0.97003 * 119.99994 * 179.97438 * 8 7 5 35 35 H 1.07996 * 119.94802 * 359.97438 * 16 15 13 36 36 H 1.07997 * 119.96723 * 179.97438 * 17 16 15 37 37 H 1.08003 * 120.14527 * 179.69266 * 20 19 18 38 38 H 1.08997 * 109.46848 * 90.00317 * 22 21 19 39 39 H 1.08999 * 109.46675 * 209.99784 * 22 21 19 40 40 H 1.08998 * 109.47169 * 329.99672 * 22 21 19 41 41 H 1.09002 * 109.44561 * 88.67587 * 25 23 21 42 42 H 1.09010 * 109.43847 * 208.59830 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1057 2.1273 -1.2578 5 6 3.4638 1.9136 -1.8752 6 1 4.1893 1.2853 -1.3800 7 6 3.7800 2.5203 -3.0722 8 7 2.8967 3.2858 -3.6750 9 14 5.4636 2.2560 -3.8372 10 1 5.4198 1.0728 -4.7335 11 1 5.8449 3.4577 -4.6219 12 1 6.4644 2.0274 -2.7642 13 6 2.3870 1.9657 1.1572 14 8 2.6917 3.1426 1.1737 15 6 2.4210 1.1768 2.4043 16 6 1.3552 0.3333 2.7280 17 6 1.3859 -0.4043 3.8922 18 6 2.4730 -0.3070 4.7481 19 6 3.5444 0.5299 4.4275 20 6 3.5198 1.2718 3.2630 21 7 4.6367 0.6111 5.3038 22 6 5.6011 1.7081 5.1908 23 6 4.7851 -0.3377 6.2538 24 8 5.7051 -0.2720 7.0416 25 6 3.8029 -1.4787 6.3305 26 8 2.5157 -1.0352 5.8941 27 1 -0.3633 0.6546 0.7922 28 1 -0.3633 0.3587 -0.9631 29 1 -0.3633 -1.0134 0.1708 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3353 1.7748 -1.9436 33 1 1.9590 3.1894 -1.0613 34 1 3.1194 3.7129 -4.5170 35 1 0.5059 0.2591 2.0651 36 1 0.5607 -1.0552 4.1403 37 1 4.3457 1.9228 3.0170 38 1 5.2769 2.5423 5.8129 39 1 6.5810 1.3660 5.5236 40 1 5.6629 2.0320 4.1519 41 1 4.1422 -2.2932 5.6905 42 1 3.7351 -1.8305 7.3600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528136186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:35 Heat of formation + Delta-G solvation = -76.300109 kcal Electronic energy + Delta-G solvation = -26873.687869 eV Core-core repulsion = 23012.200523 eV Total energy + Delta-G solvation = -3861.487347 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.69761 -41.14182 -39.82708 -38.46126 -37.19165 -36.73713 -34.89406 -32.05805 -31.94376 -30.92845 -30.42135 -29.17673 -27.37173 -25.39623 -24.70354 -24.23111 -23.30509 -21.54572 -20.30678 -19.64097 -18.64748 -18.50167 -18.35838 -17.57377 -17.30295 -16.97696 -16.45037 -16.32566 -15.94476 -15.86528 -15.47637 -15.19159 -15.03249 -14.97225 -14.59024 -14.36504 -14.02476 -13.66383 -13.57297 -13.43126 -13.26569 -13.24558 -13.06335 -12.66071 -12.55148 -12.48491 -12.25301 -12.05406 -11.95738 -11.72065 -11.47296 -11.16664 -10.77969 -10.64195 -9.84027 -9.47300 -9.01078 -8.23125 -6.37836 -0.28538 0.02252 1.07443 1.34335 1.36509 1.38964 1.48886 1.79753 2.07263 2.28329 2.41457 2.60643 2.82443 3.06814 3.44771 3.53696 3.88105 3.96713 4.04560 4.06485 4.12866 4.21502 4.32469 4.36640 4.44359 4.57232 4.58526 4.64529 4.71024 4.88459 4.99959 5.00904 5.08872 5.15018 5.23346 5.25809 5.35071 5.49704 5.57001 5.70430 5.83258 6.05361 6.16458 6.50044 6.66895 6.73707 7.23750 7.39236 8.84027 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016163 B = 0.003652 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.890403 B = 7665.667642 C = 8725.206944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.088 3.912 3 N -0.590 5.590 4 C 0.261 3.739 5 C -0.546 4.546 6 H 0.053 0.947 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.965 3.035 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.542 3.458 14 O -0.594 6.594 15 C -0.123 4.123 16 C -0.082 4.082 17 C -0.093 4.093 18 C 0.097 3.903 19 C 0.081 3.919 20 C -0.086 4.086 21 N -0.557 5.557 22 C 0.070 3.930 23 C 0.480 3.520 24 O -0.544 6.544 25 C 0.055 3.945 26 O -0.297 6.297 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.029 0.971 33 H 0.000 1.000 34 H 0.268 0.732 35 H 0.170 0.830 36 H 0.186 0.814 37 H 0.127 0.873 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.127 0.873 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.867 -14.724 17.795 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.034 4.034 3 N -0.320 5.320 4 C 0.140 3.860 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.790 3.210 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.199 1.199 13 C 0.331 3.669 14 O -0.477 6.477 15 C -0.127 4.127 16 C -0.100 4.100 17 C -0.112 4.112 18 C 0.050 3.950 19 C -0.012 4.012 20 C -0.107 4.107 21 N -0.282 5.282 22 C -0.071 4.071 23 C 0.271 3.729 24 O -0.422 6.422 25 C -0.022 4.022 26 O -0.211 6.211 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.127 0.873 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.047 0.953 33 H 0.018 0.982 34 H 0.076 0.924 35 H 0.187 0.813 36 H 0.203 0.797 37 H 0.144 0.856 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.145 0.855 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.334 -14.039 18.207 23.232 hybrid contribution 1.446 0.978 -1.022 2.023 sum -1.887 -13.061 17.185 21.667 Atomic orbital electron populations 1.22317 0.93935 1.04296 1.02065 1.22049 0.95873 0.81267 1.04201 1.48192 1.61829 1.15144 1.06817 1.18764 0.96098 0.90983 0.80123 1.21702 1.00328 1.30149 1.06246 0.92906 1.25811 1.01257 0.94387 0.97394 1.70043 1.36590 1.31986 1.17942 0.85449 0.79099 0.78164 0.78305 1.18749 1.20662 1.19890 1.18782 0.77081 0.86592 0.84403 1.90731 1.51537 1.18412 1.86975 1.19649 0.97574 1.00586 0.94871 1.21907 0.97967 0.92825 0.97322 1.20790 0.98544 1.01255 0.90589 1.19001 0.94457 0.93415 0.88150 1.17901 0.89512 1.01393 0.92444 1.20548 0.98760 0.99604 0.91786 1.45728 1.25007 1.26593 1.30921 1.22003 0.92613 0.88601 1.03889 1.22258 0.86953 0.84387 0.79343 1.90754 1.34588 1.76429 1.40397 1.23507 0.78856 0.93109 1.06719 1.86189 1.29812 1.67951 1.37174 0.91709 0.93527 0.87321 0.90950 0.87760 0.95315 0.98230 0.92356 0.81326 0.79653 0.85552 0.90804 0.89335 0.89641 0.85494 0.80870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.68 9.14 71.98 0.66 -3.02 16 2 C 0.09 2.54 5.59 86.38 0.48 3.03 16 3 N -0.59 -24.60 2.46 -829.81 -2.04 -26.64 16 4 C 0.26 13.89 5.22 85.63 0.45 14.34 16 5 C -0.55 -31.11 9.39 25.60 0.24 -30.87 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.62 5.46 84.66 0.46 1.08 16 8 N -0.93 -55.39 13.29 21.45 0.28 -55.11 16 9 Si 0.97 44.42 29.54 68.60 2.03 46.44 16 10 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 C 0.54 22.99 7.26 86.72 0.63 23.62 16 14 O -0.59 -31.44 16.54 -3.99 -0.07 -31.50 16 15 C -0.12 -3.78 5.08 -20.07 -0.10 -3.88 16 16 C -0.08 -1.72 7.40 22.54 0.17 -1.55 16 17 C -0.09 -1.49 9.98 22.29 0.22 -1.26 16 18 C 0.10 1.88 6.46 22.73 0.15 2.03 16 19 C 0.08 1.96 6.38 38.10 0.24 2.20 16 20 C -0.09 -2.50 9.00 22.61 0.20 -2.29 16 21 N -0.56 -13.12 3.12 -653.67 -2.04 -15.16 16 22 C 0.07 1.53 10.23 127.77 1.31 2.84 16 23 C 0.48 10.50 7.67 87.63 0.67 11.17 16 24 O -0.54 -14.91 16.77 -3.08 -0.05 -14.96 16 25 C 0.06 0.72 7.17 71.25 0.51 1.23 16 26 O -0.30 -4.81 10.43 -91.85 -0.96 -5.76 16 27 H 0.06 1.35 6.32 -2.39 -0.02 1.33 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 2.23 8.13 -2.39 -0.02 2.21 16 31 H 0.10 2.42 5.10 -2.39 -0.01 2.40 16 32 H 0.03 1.54 8.07 -2.39 -0.02 1.52 16 33 H 0.00 -0.03 7.35 -2.39 -0.02 -0.04 16 34 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.17 3.00 3.70 -2.91 -0.01 2.99 16 36 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.13 3.98 6.11 -2.91 -0.02 3.96 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 39 H 0.09 1.87 7.49 -2.39 -0.02 1.85 16 40 H 0.09 1.86 5.95 -2.39 -0.01 1.84 16 41 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.17 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -79.72 348.00 4.51 -75.21 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 1.06 Total: 8.82 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 6.29 Total: 18.66 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -3.80 Total: -96.91 kcal Atomic # 8 Polarization: -51.15 SS G_CDS: -1.08 Total: -52.23 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -79.72 4.51 -75.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528136186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.086 kcal (2) G-P(sol) polarization free energy of solvation -79.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds