Wall clock time and date at job start Tue Mar 31 2020 12:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47184 * 2 1 4 4 C 1.50702 * 109.47021 * 240.00268 * 2 1 3 5 5 H 1.08003 * 120.00391 * 239.99657 * 4 2 1 6 6 C 1.37878 * 120.00281 * 59.99730 * 4 2 1 7 7 N 1.31518 * 119.99868 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00206 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47003 * 179.97438 * 8 6 4 10 10 H 1.48496 * 109.47359 * 299.99921 * 8 6 4 11 11 H 1.48497 * 109.47074 * 60.00350 * 8 6 4 12 12 N 1.46496 * 109.47392 * 120.00503 * 2 1 3 13 13 C 1.46496 * 120.00505 * 59.99653 * 12 2 1 14 14 C 1.34787 * 119.99821 * 240.00121 * 12 2 1 15 15 O 1.21581 * 119.99408 * 355.46300 * 14 12 2 16 16 C 1.47604 * 119.99935 * 175.46831 * 14 12 2 17 17 C 1.39723 * 120.05180 * 221.33479 * 16 14 12 18 18 C 1.37845 * 120.10972 * 179.69333 * 17 16 14 19 19 C 1.38691 * 120.07366 * 0.59415 * 18 17 16 20 20 C 1.39680 * 120.10236 * 359.68061 * 19 18 17 21 21 C 1.38089 * 120.11922 * 0.02562 * 20 19 18 22 22 N 1.40274 * 119.24685 * 179.97438 * 20 19 18 23 23 C 1.46488 * 120.51807 * 195.52238 * 22 20 19 24 24 C 1.35083 * 118.96307 * 15.49960 * 22 20 19 25 25 O 1.21296 * 120.13685 * 181.62983 * 24 22 20 26 26 C 1.50754 * 119.72946 * 1.65244 * 24 22 20 27 27 O 1.35850 * 120.50654 * 179.70996 * 19 18 17 28 28 H 1.09003 * 109.47445 * 299.99568 * 1 2 3 29 29 H 1.09002 * 109.47550 * 60.00214 * 1 2 3 30 30 H 1.09004 * 109.47454 * 179.97438 * 1 2 3 31 31 H 0.96992 * 120.00214 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46992 * 95.16992 * 13 12 2 33 33 H 1.08995 * 109.47717 * 215.17707 * 13 12 2 34 34 H 1.09004 * 109.47006 * 335.17629 * 13 12 2 35 35 H 1.07999 * 119.94430 * 359.97438 * 17 16 14 36 36 H 1.08000 * 119.96199 * 180.27334 * 18 17 16 37 37 H 1.08000 * 120.14929 * 179.97438 * 21 20 19 38 38 H 1.09008 * 109.47392 * 90.00075 * 23 22 20 39 39 H 1.09001 * 109.47426 * 210.00071 * 23 22 20 40 40 H 1.09003 * 109.47337 * 330.00320 * 23 22 20 41 41 H 1.08992 * 109.44066 * 88.68033 * 26 24 22 42 42 H 1.08998 * 109.44076 * 208.61118 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8267 -0.4198 -5.2205 10 1 3.8073 -1.1188 -4.0079 11 1 1.8279 -2.5197 -4.0083 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.1550 1.1016 1.8511 16 6 3.2026 -0.6991 3.3367 17 6 3.2007 0.0135 4.5385 18 6 3.5767 -0.6066 5.7108 19 6 3.9700 -1.9366 5.6983 20 6 3.9797 -2.6530 4.4993 21 6 3.5984 -2.0396 3.3224 22 7 4.3812 -3.9970 4.5072 23 6 4.7285 -4.6771 3.2571 24 6 4.4431 -4.6543 5.6858 25 8 4.8159 -5.8080 5.7208 26 6 4.0465 -3.9481 6.9573 27 8 4.3480 -2.5548 6.8474 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 0.7087 1.1614 -3.4843 32 1 2.4609 -2.7357 1.0524 33 1 1.5338 -2.2632 2.4966 34 1 0.7352 -2.3244 0.9071 35 1 2.8996 1.0506 4.5498 36 1 3.5701 -0.0548 6.6391 37 1 3.6061 -2.5929 2.3949 38 1 5.7932 -4.5528 3.0594 39 1 4.4966 -5.7386 3.3444 40 1 4.1540 -4.2460 2.4372 41 1 2.9772 -4.0759 7.1248 42 1 4.5985 -4.3731 7.7956 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528416282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:02 Heat of formation + Delta-G solvation = -52.290843 kcal Electronic energy + Delta-G solvation = -27023.049641 eV Core-core repulsion = 23162.603414 eV Total energy + Delta-G solvation = -3860.446227 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.80374 -39.73975 -38.81487 -37.48384 -35.90865 -35.37849 -33.05033 -31.18852 -30.15132 -29.72967 -28.98968 -26.80630 -26.11881 -25.26695 -24.06545 -22.69577 -21.78037 -19.88641 -19.40359 -18.41707 -17.56868 -17.27787 -16.67859 -16.28044 -15.91903 -15.63573 -15.29604 -15.06406 -14.80125 -14.74312 -14.63152 -13.94494 -13.76354 -13.50114 -13.24171 -12.80460 -12.69680 -12.53675 -12.45809 -12.36596 -11.85024 -11.61459 -11.43199 -11.21976 -11.10501 -10.86455 -10.78313 -10.62097 -10.32772 -10.28849 -10.21729 -9.27341 -9.18263 -8.80192 -8.48252 -8.10035 -7.70525 -6.12345 -4.20795 0.71791 0.97281 1.97505 2.21937 2.90417 3.13567 3.24461 3.30177 3.31525 3.58763 3.68805 3.86615 4.33720 4.36011 4.53809 4.69280 4.75564 4.88465 5.04122 5.07100 5.17040 5.18921 5.22680 5.38470 5.46682 5.60822 5.63188 5.84628 5.92550 6.04821 6.17201 6.27416 6.35605 6.56154 6.69708 6.75350 6.97582 7.02410 7.32671 7.39024 7.43213 7.64661 7.93965 8.12028 8.39985 8.74214 8.91156 9.45752 10.92999 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018711 B = 0.003587 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.099975 B = 7803.864072 C = 8819.689483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.258 3.742 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.583 5.583 13 C 0.082 3.918 14 C 0.545 3.455 15 O -0.540 6.540 16 C -0.103 4.103 17 C -0.060 4.060 18 C -0.112 4.112 19 C 0.088 3.912 20 C 0.084 3.916 21 C -0.097 4.097 22 N -0.550 5.550 23 C 0.074 3.926 24 C 0.487 3.513 25 O -0.514 6.514 26 C 0.052 3.948 27 O -0.301 6.301 28 H 0.012 0.988 29 H 0.095 0.905 30 H 0.030 0.970 31 H 0.265 0.735 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.611 -8.658 17.084 19.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.314 5.314 13 C -0.062 4.062 14 C 0.332 3.668 15 O -0.419 6.419 16 C -0.107 4.107 17 C -0.079 4.079 18 C -0.131 4.131 19 C 0.041 3.959 20 C -0.010 4.010 21 C -0.118 4.118 22 N -0.275 5.275 23 C -0.067 4.067 24 C 0.275 3.725 25 O -0.389 6.389 26 C -0.026 4.026 27 O -0.216 6.216 28 H 0.032 0.968 29 H 0.113 0.887 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.166 0.834 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.118 0.882 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.013 -8.584 16.938 19.227 hybrid contribution 0.262 -0.835 -1.145 1.441 sum 3.276 -9.419 15.793 18.678 Atomic orbital electron populations 1.22113 0.98034 0.99470 1.01007 1.19006 0.90920 0.94584 0.79687 0.91675 1.21245 1.32060 1.13061 0.90225 0.92354 1.24882 0.94885 0.94947 0.98954 1.69858 1.36189 1.22493 1.23975 0.86551 0.79274 0.79550 0.81986 1.21125 1.20215 1.20239 1.48202 1.48307 1.11548 1.23295 1.21825 1.01376 0.83152 0.99804 1.18078 0.79668 0.86067 0.83013 1.90772 1.55456 1.18349 1.77330 1.20078 1.02108 0.93240 0.95273 1.21073 0.96695 1.00234 0.89912 1.20445 1.00897 0.92154 0.99645 1.18778 1.00665 0.93103 0.83333 1.17914 1.04165 0.84357 0.94529 1.21181 0.98984 0.94445 0.97190 1.45543 1.63877 1.09521 1.08592 1.21949 1.01765 0.98722 0.84280 1.21534 0.78083 0.87234 0.85644 1.90769 1.45009 1.16768 1.86364 1.23193 1.04009 0.79288 0.96108 1.86201 1.77290 1.22196 1.35874 0.96848 0.88652 0.95048 0.92546 0.93487 0.92589 0.90364 0.83841 0.83785 0.83446 0.91263 0.89418 0.89677 0.88241 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.96 37.15 0.33 -3.05 16 2 C 0.26 6.33 2.63 -69.09 -0.18 6.15 16 3 H 0.07 1.86 6.91 -51.93 -0.36 1.51 16 4 C -0.53 -13.77 8.37 -34.44 -0.29 -14.06 16 5 H 0.06 1.49 7.65 -52.48 -0.40 1.09 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.48 11.32 55.43 0.63 -23.85 16 8 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 12 N -0.58 -11.85 2.75 -176.48 -0.49 -12.34 16 13 C 0.08 1.30 8.13 59.84 0.49 1.78 16 14 C 0.55 10.91 7.31 -12.43 -0.09 10.82 16 15 O -0.54 -12.95 16.28 5.29 0.09 -12.86 16 16 C -0.10 -1.57 5.15 -104.95 -0.54 -2.11 16 17 C -0.06 -0.77 9.63 -39.17 -0.38 -1.14 16 18 C -0.11 -1.21 9.98 -39.56 -0.39 -1.60 16 19 C 0.09 1.00 6.45 -38.88 -0.25 0.75 16 20 C 0.08 1.01 6.38 -83.51 -0.53 0.48 16 21 C -0.10 -1.28 6.92 -39.06 -0.27 -1.55 16 22 N -0.55 -6.31 3.12 -120.60 -0.38 -6.68 16 23 C 0.07 0.73 10.23 59.84 0.61 1.34 16 24 C 0.49 5.54 7.67 -10.82 -0.08 5.46 16 25 O -0.51 -7.11 16.77 5.54 0.09 -7.01 16 26 C 0.05 0.43 7.16 36.03 0.26 0.69 16 27 O -0.30 -3.10 10.44 -19.27 -0.20 -3.30 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.10 2.41 6.07 -51.93 -0.32 2.10 16 30 H 0.03 0.66 6.67 -51.93 -0.35 0.31 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.05 0.68 6.85 -51.93 -0.36 0.32 16 33 H 0.06 0.74 6.00 -51.93 -0.31 0.43 16 34 H 0.08 1.26 6.44 -51.93 -0.33 0.93 16 35 H 0.14 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.15 1.85 3.58 -52.49 -0.19 1.66 16 38 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.09 0.83 7.49 -51.93 -0.39 0.44 16 40 H 0.08 0.75 5.95 -51.93 -0.31 0.44 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.14 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 342.41 15.07 5.16 5.16 Total: -1.00 -32.42 342.41 -6.51 -38.94 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.98 Total: 0.82 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -1.42 Total: 5.61 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: -0.23 Total: -42.87 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.02 Total: -23.18 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.42 -6.51 -38.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528416282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.353 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds