Wall clock time and date at job start Tue Mar 31 2020 12:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47184 * 2 1 4 4 C 1.50702 * 109.47021 * 240.00268 * 2 1 3 5 5 H 1.08003 * 120.00391 * 239.99657 * 4 2 1 6 6 C 1.37878 * 120.00281 * 59.99730 * 4 2 1 7 7 N 1.31518 * 119.99868 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00206 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47003 * 179.97438 * 8 6 4 10 10 H 1.48496 * 109.47359 * 299.99921 * 8 6 4 11 11 H 1.48497 * 109.47074 * 60.00350 * 8 6 4 12 12 N 1.46496 * 109.47392 * 120.00503 * 2 1 3 13 13 C 1.46496 * 120.00505 * 59.99653 * 12 2 1 14 14 C 1.34787 * 119.99821 * 240.00121 * 12 2 1 15 15 O 1.21581 * 119.99408 * 355.46300 * 14 12 2 16 16 C 1.47604 * 119.99935 * 175.46831 * 14 12 2 17 17 C 1.39723 * 120.05180 * 221.33479 * 16 14 12 18 18 C 1.37845 * 120.10972 * 179.69333 * 17 16 14 19 19 C 1.38691 * 120.07366 * 0.59415 * 18 17 16 20 20 C 1.39680 * 120.10236 * 359.68061 * 19 18 17 21 21 C 1.38089 * 120.11922 * 0.02562 * 20 19 18 22 22 N 1.40274 * 119.24685 * 179.97438 * 20 19 18 23 23 C 1.46488 * 120.51807 * 195.52238 * 22 20 19 24 24 C 1.35083 * 118.96307 * 15.49960 * 22 20 19 25 25 O 1.21296 * 120.13685 * 181.62983 * 24 22 20 26 26 C 1.50754 * 119.72946 * 1.65244 * 24 22 20 27 27 O 1.35850 * 120.50654 * 179.70996 * 19 18 17 28 28 H 1.09003 * 109.47445 * 299.99568 * 1 2 3 29 29 H 1.09002 * 109.47550 * 60.00214 * 1 2 3 30 30 H 1.09004 * 109.47454 * 179.97438 * 1 2 3 31 31 H 0.96992 * 120.00214 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46992 * 95.16992 * 13 12 2 33 33 H 1.08995 * 109.47717 * 215.17707 * 13 12 2 34 34 H 1.09004 * 109.47006 * 335.17629 * 13 12 2 35 35 H 1.07999 * 119.94430 * 359.97438 * 17 16 14 36 36 H 1.08000 * 119.96199 * 180.27334 * 18 17 16 37 37 H 1.08000 * 120.14929 * 179.97438 * 21 20 19 38 38 H 1.09008 * 109.47392 * 90.00075 * 23 22 20 39 39 H 1.09001 * 109.47426 * 210.00071 * 23 22 20 40 40 H 1.09003 * 109.47337 * 330.00320 * 23 22 20 41 41 H 1.08992 * 109.44066 * 88.68033 * 26 24 22 42 42 H 1.08998 * 109.44076 * 208.61118 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8267 -0.4198 -5.2205 10 1 3.8073 -1.1188 -4.0079 11 1 1.8279 -2.5197 -4.0083 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.1550 1.1016 1.8511 16 6 3.2026 -0.6991 3.3367 17 6 3.2007 0.0135 4.5385 18 6 3.5767 -0.6066 5.7108 19 6 3.9700 -1.9366 5.6983 20 6 3.9797 -2.6530 4.4993 21 6 3.5984 -2.0396 3.3224 22 7 4.3812 -3.9970 4.5072 23 6 4.7285 -4.6771 3.2571 24 6 4.4431 -4.6543 5.6858 25 8 4.8159 -5.8080 5.7208 26 6 4.0465 -3.9481 6.9573 27 8 4.3480 -2.5548 6.8474 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 0.7087 1.1614 -3.4843 32 1 2.4609 -2.7357 1.0524 33 1 1.5338 -2.2632 2.4966 34 1 0.7352 -2.3244 0.9071 35 1 2.8996 1.0506 4.5498 36 1 3.5701 -0.0548 6.6391 37 1 3.6061 -2.5929 2.3949 38 1 5.7932 -4.5528 3.0594 39 1 4.4966 -5.7386 3.3444 40 1 4.1540 -4.2460 2.4372 41 1 2.9772 -4.0759 7.1248 42 1 4.5985 -4.3731 7.7956 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528416282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:01 Heat of formation + Delta-G solvation = -73.461941 kcal Electronic energy + Delta-G solvation = -27023.967689 eV Core-core repulsion = 23162.603414 eV Total energy + Delta-G solvation = -3861.364274 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.69030 -41.08250 -39.83418 -38.49885 -37.27120 -36.69382 -34.87677 -32.49149 -31.11726 -30.85488 -30.23342 -27.98330 -27.34470 -27.13431 -25.14082 -23.73685 -23.13972 -21.25448 -20.28460 -19.66732 -18.58706 -18.45507 -18.09404 -17.73872 -17.24720 -16.84520 -16.41763 -16.26394 -16.00705 -15.85107 -15.64953 -15.26281 -14.84456 -14.62672 -14.41536 -14.29701 -13.98834 -13.79450 -13.51023 -13.45445 -13.19241 -13.03614 -12.93260 -12.72632 -12.66649 -12.31519 -12.29088 -12.14376 -12.12557 -11.53856 -11.22805 -11.14801 -10.80660 -10.50507 -9.77621 -9.41401 -9.00381 -8.13989 -6.30447 -0.29290 0.02393 1.10637 1.39433 1.42597 1.44659 1.51778 1.76661 2.13266 2.27110 2.45534 2.60781 2.85149 3.14336 3.40310 3.58317 3.89886 3.98743 4.07759 4.09869 4.24856 4.35626 4.39176 4.40063 4.53276 4.63599 4.69323 4.70171 4.73778 4.89240 4.93699 4.97810 5.05181 5.16943 5.27850 5.39926 5.46472 5.61764 5.65993 5.71155 6.02172 6.15790 6.17047 6.53898 6.74117 6.76476 7.25637 7.43752 8.90226 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018711 B = 0.003587 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.099975 B = 7803.864072 C = 8819.689483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.261 3.739 3 H 0.012 0.988 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.963 3.037 9 H -0.285 1.285 10 H -0.278 1.278 11 H -0.262 1.262 12 N -0.590 5.590 13 C 0.080 3.920 14 C 0.541 3.459 15 O -0.594 6.594 16 C -0.124 4.124 17 C -0.059 4.059 18 C -0.099 4.099 19 C 0.097 3.903 20 C 0.084 3.916 21 C -0.092 4.092 22 N -0.554 5.554 23 C 0.068 3.932 24 C 0.482 3.518 25 O -0.543 6.543 26 C 0.053 3.947 27 O -0.300 6.300 28 H 0.022 0.978 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.265 0.735 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.143 0.857 36 H 0.176 0.824 37 H 0.151 0.849 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.128 0.872 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.883 -10.784 19.079 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.160 3.840 3 H 0.030 0.970 4 C -0.577 4.577 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.788 3.212 9 H -0.210 1.210 10 H -0.203 1.203 11 H -0.187 1.187 12 N -0.319 5.319 13 C -0.062 4.062 14 C 0.330 3.670 15 O -0.477 6.477 16 C -0.128 4.128 17 C -0.078 4.078 18 C -0.117 4.117 19 C 0.050 3.950 20 C -0.010 4.010 21 C -0.113 4.113 22 N -0.279 5.279 23 C -0.073 4.073 24 C 0.272 3.728 25 O -0.420 6.420 26 C -0.024 4.024 27 O -0.214 6.214 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.161 0.839 36 H 0.194 0.806 37 H 0.168 0.832 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.145 0.855 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.275 -10.753 18.959 22.041 hybrid contribution 0.226 -0.203 -1.652 1.679 sum 3.501 -10.956 17.308 20.781 Atomic orbital electron populations 1.21898 0.96885 1.00269 1.00174 1.18600 0.91738 0.92328 0.81367 0.96973 1.21533 1.32017 1.13131 0.91048 0.92017 1.25700 0.95050 0.95601 1.01921 1.70004 1.37237 1.23805 1.24511 0.85545 0.78386 0.79043 0.78260 1.21038 1.20347 1.18652 1.48157 1.48310 1.13229 1.22199 1.22053 1.01671 0.80570 1.01862 1.18793 0.78569 0.85517 0.84138 1.90729 1.57449 1.20878 1.78649 1.19647 1.05282 0.94277 0.93556 1.21138 0.96565 1.00239 0.89897 1.20646 0.99299 0.91959 0.99827 1.18931 0.99201 0.93289 0.83553 1.17885 1.04059 0.84666 0.94390 1.21043 0.98898 0.93486 0.97867 1.45689 1.63635 1.09332 1.09283 1.22061 1.02118 0.98854 0.84229 1.22143 0.77264 0.87017 0.86386 1.90761 1.46364 1.18100 1.86794 1.23510 1.06163 0.77653 0.95074 1.86214 1.77087 1.23229 1.34915 0.95856 0.91245 0.93273 0.92618 0.91989 0.89621 0.90646 0.83903 0.80633 0.83194 0.91076 0.89250 0.88765 0.85482 0.81124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.26 8.96 71.98 0.64 -5.62 16 2 C 0.26 13.30 2.63 44.24 0.12 13.42 16 3 H 0.01 0.75 6.91 -2.39 -0.02 0.73 16 4 C -0.54 -28.61 8.37 25.60 0.21 -28.39 16 5 H 0.06 3.15 7.65 -2.91 -0.02 3.13 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.92 -52.04 11.32 21.45 0.24 -51.80 16 8 Si 0.96 42.25 29.54 68.60 2.03 44.27 16 9 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 12 N -0.59 -24.32 2.75 -830.50 -2.29 -26.61 16 13 C 0.08 2.44 8.13 127.77 1.04 3.48 16 14 C 0.54 22.21 7.31 86.71 0.63 22.85 16 15 O -0.59 -30.08 16.28 -3.97 -0.06 -30.15 16 16 C -0.12 -3.68 5.15 -20.08 -0.10 -3.78 16 17 C -0.06 -1.43 9.63 22.54 0.22 -1.21 16 18 C -0.10 -1.80 9.98 22.28 0.22 -1.58 16 19 C 0.10 1.89 6.45 22.73 0.15 2.04 16 20 C 0.08 1.81 6.38 38.10 0.24 2.05 16 21 C -0.09 -2.26 6.92 22.61 0.16 -2.11 16 22 N -0.55 -11.37 3.12 -653.68 -2.04 -13.41 16 23 C 0.07 1.22 10.23 127.77 1.31 2.53 16 24 C 0.48 9.65 7.67 87.63 0.67 10.32 16 25 O -0.54 -13.92 16.77 -3.08 -0.05 -13.97 16 26 C 0.05 0.66 7.16 71.25 0.51 1.17 16 27 O -0.30 -4.93 10.44 -91.86 -0.96 -5.89 16 28 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 30 H 0.05 2.07 6.67 -2.38 -0.02 2.05 16 31 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 32 H 0.06 1.69 6.85 -2.39 -0.02 1.67 16 33 H 0.09 2.08 6.00 -2.39 -0.01 2.07 16 34 H 0.07 2.32 6.44 -2.39 -0.02 2.31 16 35 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 36 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.15 3.52 3.58 -2.91 -0.01 3.51 16 38 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.09 1.57 7.49 -2.39 -0.02 1.55 16 40 H 0.09 1.48 5.95 -2.39 -0.01 1.47 16 41 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.17 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -73.16 342.41 4.41 -68.75 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 1.07 Total: 12.28 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 6.47 Total: 16.52 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -4.08 Total: -91.82 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -1.08 Total: -50.01 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -73.16 4.41 -68.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528416282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.707 kcal (2) G-P(sol) polarization free energy of solvation -73.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds