Wall clock time and date at job start Tue Mar 31 2020 13:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.46909 * 2 1 4 4 C 1.34223 * 117.00061 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99960 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00057 * 180.02562 * 4 3 2 7 7 C 1.50697 * 112.90550 * 311.24904 * 6 4 3 8 8 O 1.21277 * 120.00285 * 228.75264 * 7 6 4 9 9 N 1.34775 * 119.99940 * 48.75107 * 7 6 4 10 10 C 1.39473 * 120.00084 * 174.48341 * 9 7 6 11 11 C 1.38599 * 119.58119 * 184.72849 * 10 9 7 12 12 C 1.40800 * 118.79513 * 179.77787 * 11 10 9 13 13 C 1.41541 * 120.99805 * 180.25858 * 12 11 10 14 14 H 1.08001 * 120.00445 * 198.64617 * 13 12 11 15 15 C 1.40034 * 119.99949 * 18.64345 * 13 12 11 16 16 N 1.30749 * 119.99763 * 17.75602 * 15 13 12 17 17 Si 1.86801 * 120.00322 * 197.75157 * 15 13 12 18 18 H 1.48498 * 109.46818 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.46831 * 119.99988 * 17 15 13 20 20 H 1.48501 * 109.47095 * 239.99992 * 17 15 13 21 21 C 1.41183 * 118.01115 * 0.48367 * 12 11 10 22 22 C 1.37594 * 119.00956 * 359.75505 * 21 12 11 23 23 N 1.32084 * 121.10961 * 0.02562 * 22 21 12 24 24 C 1.53788 * 113.61298 * 180.02562 * 6 4 3 25 25 C 1.53781 * 87.17116 * 220.05758 * 24 6 4 26 26 C 1.53788 * 87.08012 * 25.38861 * 25 24 6 27 27 H 1.09001 * 109.47182 * 60.00451 * 1 2 3 28 28 H 1.09002 * 109.46700 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47527 * 299.99827 * 1 2 3 30 30 H 1.08997 * 109.47432 * 239.99730 * 2 1 3 31 31 H 1.09008 * 109.46839 * 119.99535 * 2 1 3 32 32 H 0.97000 * 120.00413 * 354.48175 * 9 7 6 33 33 H 1.07996 * 120.59823 * 0.02562 * 11 10 9 34 34 H 0.96999 * 119.99685 * 180.02562 * 16 15 13 35 35 H 1.08000 * 120.49547 * 179.77796 * 21 12 11 36 36 H 1.07995 * 119.44086 * 180.02562 * 22 21 12 37 37 H 1.09003 * 113.61699 * 105.46962 * 24 6 4 38 38 H 1.08992 * 113.61409 * 334.64579 * 24 6 4 39 39 H 1.08996 * 113.61536 * 139.93641 * 25 24 6 40 40 H 1.09008 * 113.61548 * 270.76054 * 25 24 6 41 41 H 1.09000 * 113.61049 * 89.11604 * 26 25 24 42 42 H 1.09003 * 113.61181 * 219.93486 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0012 7 6 3.2993 3.8296 -1.0425 8 8 4.0061 4.4833 -1.7801 9 7 1.9583 3.9010 -1.1562 10 6 1.3810 4.8108 -2.0419 11 6 0.0022 4.9466 -2.0811 12 6 -0.5628 5.8733 -2.9781 13 6 -1.9646 6.0537 -3.0529 14 1 -2.4032 6.5224 -3.9215 15 6 -2.7830 5.6245 -2.0008 16 7 -2.2638 5.3836 -0.8252 17 14 -4.6164 5.3962 -2.2767 18 1 -4.9506 5.7319 -3.6841 19 1 -4.9858 3.9841 -2.0039 20 1 -5.3698 6.2907 -1.3615 21 6 0.3106 6.6137 -3.8041 22 6 1.6666 6.4059 -3.6971 23 7 2.1571 5.5297 -2.8391 24 6 5.4581 2.9682 0.0011 25 6 5.3588 4.1416 0.9901 26 6 3.9878 3.5779 1.3995 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.3946 3.3197 -0.6222 33 1 -0.6271 4.3553 -1.4325 34 1 -2.8306 5.0859 -0.0965 35 1 -0.0797 7.3327 -4.5091 36 1 2.3410 6.9688 -4.3252 37 1 5.8894 3.2437 -0.9614 38 1 5.9127 2.0745 0.4283 39 1 6.1016 4.1051 1.7870 40 1 5.3045 5.1170 0.5064 41 1 4.0392 2.8502 2.2095 42 1 3.2325 4.3456 1.5674 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541069082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:59 Heat of formation + Delta-G solvation = -64.553705 kcal Electronic energy + Delta-G solvation = -27193.963461 eV Core-core repulsion = 23332.985476 eV Total energy + Delta-G solvation = -3860.977984 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.36962 -39.61582 -38.47956 -37.11272 -36.29245 -34.37749 -33.79003 -31.83882 -30.57130 -29.11351 -27.39262 -26.04649 -25.80937 -23.57540 -22.54474 -21.94146 -21.58888 -20.44253 -18.97857 -18.23084 -17.74339 -16.95229 -16.68581 -16.18035 -15.59449 -15.33880 -14.92071 -14.49368 -14.22433 -14.20970 -14.01771 -13.80640 -13.24508 -12.96762 -12.81854 -12.66351 -12.55857 -12.43943 -12.08417 -11.92828 -11.70430 -11.54724 -11.48860 -11.20297 -11.00228 -10.90274 -10.64844 -10.55985 -10.35561 -10.31222 -10.13997 -9.78921 -9.45608 -9.36480 -8.05857 -7.76881 -7.05046 -6.83590 -4.64691 1.95024 2.34841 2.60078 2.74484 2.98428 3.03840 3.16552 3.35855 3.53632 3.80482 4.13051 4.35868 4.59371 4.64001 4.70768 4.83174 4.83720 4.90924 5.14997 5.29064 5.51649 5.59500 5.63360 5.68323 5.71874 5.79649 5.86893 5.95055 5.97832 6.02390 6.29586 6.32313 6.56659 6.66162 6.79252 6.91706 7.11328 7.37730 7.43998 7.59070 7.74429 7.91849 8.18642 8.38710 8.65748 8.71772 8.81999 9.67856 9.99512 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012942 B = 0.004553 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.046334 B = 6147.676866 C = 7617.200358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.064 3.936 3 O -0.356 6.356 4 C 0.484 3.516 5 O -0.500 6.500 6 C -0.112 4.112 7 C 0.526 3.474 8 O -0.465 6.465 9 N -0.646 5.646 10 C 0.335 3.665 11 C -0.247 4.247 12 C 0.139 3.861 13 C -0.449 4.449 14 H 0.083 0.917 15 C 0.078 3.922 16 N -0.782 5.782 17 Si 0.911 3.089 18 H -0.259 1.259 19 H -0.271 1.271 20 H -0.273 1.273 21 C -0.287 4.287 22 C 0.120 3.880 23 N -0.558 5.558 24 C -0.099 4.099 25 C -0.136 4.136 26 C -0.109 4.109 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.414 0.586 33 H 0.136 0.864 34 H 0.282 0.718 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.593 -8.287 7.124 11.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.009 4.009 3 O -0.273 6.273 4 C 0.326 3.674 5 O -0.387 6.387 6 C -0.117 4.117 7 C 0.308 3.692 8 O -0.334 6.334 9 N -0.294 5.294 10 C 0.111 3.889 11 C -0.272 4.272 12 C 0.131 3.869 13 C -0.480 4.480 14 H 0.101 0.899 15 C -0.142 4.142 16 N -0.407 5.407 17 Si 0.735 3.265 18 H -0.182 1.182 19 H -0.196 1.196 20 H -0.198 1.198 21 C -0.311 4.311 22 C -0.034 4.034 23 N -0.278 5.278 24 C -0.137 4.137 25 C -0.173 4.173 26 C -0.147 4.147 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.252 0.748 33 H 0.154 0.846 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.141 0.859 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.200 -8.340 6.916 12.483 hybrid contribution -2.221 -0.551 0.209 2.298 sum 3.978 -8.891 7.126 12.069 Atomic orbital electron populations 1.21850 0.92168 1.03016 1.04332 1.23088 0.95740 0.79592 1.02490 1.86435 1.24171 1.33078 1.83605 1.23122 0.80720 0.91491 0.72022 1.90635 1.60471 1.42356 1.45240 1.22403 0.99499 0.89715 1.00074 1.19312 0.82942 0.82995 0.83911 1.90792 1.60524 1.41508 1.40578 1.43462 1.06388 1.38251 1.41248 1.18194 0.89056 0.90902 0.90730 1.21715 0.91136 1.05887 1.08465 1.17572 0.93233 0.87523 0.88570 1.19647 0.90929 1.34100 1.03314 0.89916 1.25994 1.01775 0.92337 0.94092 1.69781 1.38217 1.31685 1.01062 0.86214 0.81429 0.78871 0.80007 1.18233 1.19565 1.19829 1.21854 0.94110 1.06802 1.08317 1.21735 0.92834 0.94186 0.94671 1.67190 1.38662 1.11932 1.09981 1.22841 0.89165 0.99480 1.02205 1.22850 0.96242 0.99190 0.99062 1.22927 0.99687 1.00217 0.91889 0.90845 0.90236 0.91139 0.91148 0.91171 0.74776 0.84608 0.90719 0.88037 0.85913 0.88890 0.88177 0.90281 0.88765 0.88673 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 10.29 37.16 0.38 -1.14 16 2 C 0.06 0.73 6.19 37.16 0.23 0.96 16 3 O -0.36 -5.02 7.93 -39.24 -0.31 -5.33 16 4 C 0.48 7.32 7.03 36.01 0.25 7.57 16 5 O -0.50 -8.12 15.65 -18.75 -0.29 -8.41 16 6 C -0.11 -1.68 1.23 -155.91 -0.19 -1.88 16 7 C 0.53 10.23 6.62 -10.99 -0.07 10.16 16 8 O -0.46 -10.54 14.01 5.56 0.08 -10.47 16 9 N -0.65 -13.21 5.24 -11.49 -0.06 -13.27 16 10 C 0.34 8.18 7.42 -154.70 -1.15 7.03 16 11 C -0.25 -6.23 8.68 -38.48 -0.33 -6.56 16 12 C 0.14 3.62 5.66 -106.55 -0.60 3.02 16 13 C -0.45 -11.33 9.13 -37.65 -0.34 -11.67 16 14 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 15 C 0.08 1.82 5.23 -17.34 -0.09 1.73 16 16 N -0.78 -18.64 10.65 55.55 0.59 -18.05 16 17 Si 0.91 17.40 29.60 -169.99 -5.03 12.36 16 18 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 19 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 21 C -0.29 -6.98 9.90 -38.70 -0.38 -7.37 16 22 C 0.12 2.87 11.15 -17.68 -0.20 2.67 16 23 N -0.56 -14.20 7.85 -12.52 -0.10 -14.30 16 24 C -0.10 -1.32 6.77 -25.92 -0.18 -1.50 16 25 C -0.14 -1.59 7.74 -25.92 -0.20 -1.79 16 26 C -0.11 -1.32 7.22 -25.83 -0.19 -1.50 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 31 H 0.07 0.71 8.13 -51.92 -0.42 0.29 16 32 H 0.41 7.55 6.48 -40.82 -0.26 7.29 16 33 H 0.14 3.40 5.85 -52.49 -0.31 3.10 16 34 H 0.28 6.01 8.29 -40.82 -0.34 5.68 16 35 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 36 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 37 H 0.09 1.36 7.43 -51.93 -0.39 0.98 16 38 H 0.10 1.21 7.43 -51.93 -0.39 0.82 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.26 8.08 -51.92 -0.42 0.84 16 41 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 42 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 LS Contribution 355.11 15.07 5.35 5.35 Total: -1.00 -30.72 355.11 -8.37 -39.08 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -5.53 Total: 13.30 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -3.06 Total: -0.27 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.43 Total: -45.61 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.53 Total: -24.21 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.36 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.72 -8.37 -39.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541069082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.471 kcal (2) G-P(sol) polarization free energy of solvation -30.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds