Wall clock time and date at job start Tue Mar 31 2020 13:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.46909 * 2 1 4 4 C 1.34223 * 117.00061 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99960 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00057 * 180.02562 * 4 3 2 7 7 C 1.50697 * 112.90550 * 311.24904 * 6 4 3 8 8 O 1.21277 * 120.00285 * 228.75264 * 7 6 4 9 9 N 1.34775 * 119.99940 * 48.75107 * 7 6 4 10 10 C 1.39473 * 120.00084 * 174.48341 * 9 7 6 11 11 C 1.38599 * 119.58119 * 184.72849 * 10 9 7 12 12 C 1.40800 * 118.79513 * 179.77787 * 11 10 9 13 13 C 1.41541 * 120.99805 * 180.25858 * 12 11 10 14 14 H 1.08001 * 120.00445 * 198.64617 * 13 12 11 15 15 C 1.40034 * 119.99949 * 18.64345 * 13 12 11 16 16 N 1.30749 * 119.99763 * 17.75602 * 15 13 12 17 17 Si 1.86801 * 120.00322 * 197.75157 * 15 13 12 18 18 H 1.48498 * 109.46818 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.46831 * 119.99988 * 17 15 13 20 20 H 1.48501 * 109.47095 * 239.99992 * 17 15 13 21 21 C 1.41183 * 118.01115 * 0.48367 * 12 11 10 22 22 C 1.37594 * 119.00956 * 359.75505 * 21 12 11 23 23 N 1.32084 * 121.10961 * 0.02562 * 22 21 12 24 24 C 1.53788 * 113.61298 * 180.02562 * 6 4 3 25 25 C 1.53781 * 87.17116 * 220.05758 * 24 6 4 26 26 C 1.53788 * 87.08012 * 25.38861 * 25 24 6 27 27 H 1.09001 * 109.47182 * 60.00451 * 1 2 3 28 28 H 1.09002 * 109.46700 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47527 * 299.99827 * 1 2 3 30 30 H 1.08997 * 109.47432 * 239.99730 * 2 1 3 31 31 H 1.09008 * 109.46839 * 119.99535 * 2 1 3 32 32 H 0.97000 * 120.00413 * 354.48175 * 9 7 6 33 33 H 1.07996 * 120.59823 * 0.02562 * 11 10 9 34 34 H 0.96999 * 119.99685 * 180.02562 * 16 15 13 35 35 H 1.08000 * 120.49547 * 179.77796 * 21 12 11 36 36 H 1.07995 * 119.44086 * 180.02562 * 22 21 12 37 37 H 1.09003 * 113.61699 * 105.46962 * 24 6 4 38 38 H 1.08992 * 113.61409 * 334.64579 * 24 6 4 39 39 H 1.08996 * 113.61536 * 139.93641 * 25 24 6 40 40 H 1.09008 * 113.61548 * 270.76054 * 25 24 6 41 41 H 1.09000 * 113.61049 * 89.11604 * 26 25 24 42 42 H 1.09003 * 113.61181 * 219.93486 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0012 7 6 3.2993 3.8296 -1.0425 8 8 4.0061 4.4833 -1.7801 9 7 1.9583 3.9010 -1.1562 10 6 1.3810 4.8108 -2.0419 11 6 0.0022 4.9466 -2.0811 12 6 -0.5628 5.8733 -2.9781 13 6 -1.9646 6.0537 -3.0529 14 1 -2.4032 6.5224 -3.9215 15 6 -2.7830 5.6245 -2.0008 16 7 -2.2638 5.3836 -0.8252 17 14 -4.6164 5.3962 -2.2767 18 1 -4.9506 5.7319 -3.6841 19 1 -4.9858 3.9841 -2.0039 20 1 -5.3698 6.2907 -1.3615 21 6 0.3106 6.6137 -3.8041 22 6 1.6666 6.4059 -3.6971 23 7 2.1571 5.5297 -2.8391 24 6 5.4581 2.9682 0.0011 25 6 5.3588 4.1416 0.9901 26 6 3.9878 3.5779 1.3995 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.3946 3.3197 -0.6222 33 1 -0.6271 4.3553 -1.4325 34 1 -2.8306 5.0859 -0.0965 35 1 -0.0797 7.3327 -4.5091 36 1 2.3410 6.9688 -4.3252 37 1 5.8894 3.2437 -0.9614 38 1 5.9127 2.0745 0.4283 39 1 6.1016 4.1051 1.7870 40 1 5.3045 5.1170 0.5064 41 1 4.0392 2.8502 2.2095 42 1 3.2325 4.3456 1.5674 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541069082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:58 Heat of formation + Delta-G solvation = -80.958368 kcal Electronic energy + Delta-G solvation = -27194.674820 eV Core-core repulsion = 23332.985476 eV Total energy + Delta-G solvation = -3861.689344 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.61891 -41.05826 -40.05070 -38.51634 -37.49613 -36.16562 -35.55144 -32.75843 -32.45261 -30.77897 -28.71630 -27.92743 -26.83653 -24.68708 -23.94879 -23.79254 -22.66251 -22.08525 -20.35264 -19.54814 -19.44373 -18.14082 -17.92108 -17.65466 -17.08821 -16.95150 -16.27038 -16.05082 -16.01597 -15.61613 -15.29028 -15.12534 -14.81813 -14.36207 -14.26753 -14.18654 -13.77208 -13.49540 -13.27337 -13.16245 -12.97334 -12.90150 -12.73310 -12.66448 -12.54172 -12.08440 -11.99861 -11.91284 -11.63026 -11.60138 -11.54411 -11.42875 -11.16905 -11.02327 -9.98034 -9.64023 -8.89076 -8.64239 -6.56632 0.60266 0.84821 0.99772 1.31210 1.42255 1.54841 1.58122 1.77859 2.02561 2.20334 2.78863 2.97499 3.27094 3.44238 3.57024 3.69868 3.76755 3.97761 4.01074 4.16415 4.29011 4.32877 4.59961 4.63433 4.73472 4.76353 4.82745 4.84619 4.89310 4.92294 4.93044 4.99549 5.06689 5.09128 5.24868 5.31353 5.33959 5.49259 5.61016 5.90808 6.10251 6.41314 6.44247 6.56769 6.78888 6.82587 7.14261 7.81349 8.23784 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012942 B = 0.004553 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.046334 B = 6147.676866 C = 7617.200358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.365 6.365 4 C 0.488 3.512 5 O -0.512 6.512 6 C -0.118 4.118 7 C 0.525 3.475 8 O -0.501 6.501 9 N -0.642 5.642 10 C 0.330 3.670 11 C -0.265 4.265 12 C 0.111 3.889 13 C -0.477 4.477 14 H 0.084 0.916 15 C 0.041 3.959 16 N -0.803 5.803 17 Si 0.987 3.013 18 H -0.259 1.259 19 H -0.260 1.260 20 H -0.264 1.264 21 C -0.301 4.301 22 C 0.114 3.886 23 N -0.582 5.582 24 C -0.096 4.096 25 C -0.128 4.128 26 C -0.099 4.099 27 H 0.054 0.946 28 H 0.106 0.894 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.423 0.577 33 H 0.133 0.867 34 H 0.294 0.706 35 H 0.116 0.884 36 H 0.150 0.850 37 H 0.073 0.927 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.126 0.874 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.804 -9.363 8.673 13.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.016 4.016 3 O -0.282 6.282 4 C 0.331 3.669 5 O -0.400 6.400 6 C -0.122 4.122 7 C 0.309 3.691 8 O -0.373 6.373 9 N -0.290 5.290 10 C 0.105 3.895 11 C -0.290 4.290 12 C 0.103 3.897 13 C -0.507 4.507 14 H 0.102 0.898 15 C -0.178 4.178 16 N -0.427 5.427 17 Si 0.807 3.193 18 H -0.183 1.183 19 H -0.185 1.185 20 H -0.189 1.189 21 C -0.325 4.325 22 C -0.039 4.039 23 N -0.303 5.303 24 C -0.134 4.134 25 C -0.165 4.165 26 C -0.136 4.136 27 H 0.073 0.927 28 H 0.125 0.875 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.262 0.738 33 H 0.150 0.850 34 H 0.105 0.895 35 H 0.134 0.866 36 H 0.167 0.833 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.090 0.910 41 H 0.145 0.855 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.418 -9.431 8.488 13.796 hybrid contribution -1.989 -0.229 -0.262 2.019 sum 3.429 -9.660 8.226 13.143 Atomic orbital electron populations 1.21873 0.90976 1.04549 1.03496 1.23374 0.96665 0.78338 1.03190 1.86429 1.23632 1.34883 1.83248 1.23038 0.80988 0.91180 0.71736 1.90626 1.60788 1.42562 1.46008 1.22428 1.00279 0.89100 1.00437 1.20003 0.82182 0.82788 0.84092 1.90763 1.61111 1.43235 1.42201 1.43502 1.07186 1.37695 1.40664 1.18435 0.89134 0.91057 0.90825 1.21697 0.91544 1.06570 1.09200 1.17999 0.94234 0.88172 0.89330 1.19935 0.91190 1.35351 1.04217 0.89771 1.26849 1.06348 0.91266 0.93295 1.69796 1.40367 1.30738 1.01840 0.85084 0.75161 0.79256 0.79818 1.18280 1.18465 1.18896 1.22041 0.94310 1.07327 1.08810 1.22193 0.93316 0.93893 0.94499 1.67308 1.39178 1.12888 1.10898 1.22901 0.87572 1.00954 1.01947 1.22799 0.97052 0.97330 0.99292 1.23039 0.99553 1.00416 0.90631 0.92696 0.87525 0.90863 0.91457 0.89460 0.73769 0.84980 0.89468 0.86612 0.83279 0.90814 0.86312 0.86759 0.90994 0.85546 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 10.29 71.98 0.74 -2.02 16 2 C 0.06 1.22 6.19 71.98 0.45 1.67 16 3 O -0.37 -10.02 7.93 -51.35 -0.41 -10.42 16 4 C 0.49 14.22 7.03 71.24 0.50 14.72 16 5 O -0.51 -15.85 15.65 21.96 0.34 -15.51 16 6 C -0.12 -3.45 1.23 -53.09 -0.07 -3.52 16 7 C 0.52 20.75 6.62 87.66 0.58 21.33 16 8 O -0.50 -23.41 14.01 -3.02 -0.04 -23.45 16 9 N -0.64 -26.85 5.24 -308.66 -1.62 -28.47 16 10 C 0.33 16.59 7.42 132.75 0.98 17.57 16 11 C -0.26 -13.75 8.68 22.98 0.20 -13.55 16 12 C 0.11 5.91 5.66 -21.11 -0.12 5.79 16 13 C -0.48 -24.35 9.13 23.52 0.21 -24.14 16 14 H 0.08 4.12 7.91 -2.91 -0.02 4.10 16 15 C 0.04 1.89 5.23 85.29 0.45 2.33 16 16 N -0.80 -38.11 10.65 21.84 0.23 -37.88 16 17 Si 0.99 34.78 29.60 68.60 2.03 36.81 16 18 H -0.26 -9.09 7.11 99.48 0.71 -8.39 16 19 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 20 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 21 C -0.30 -14.97 9.90 22.84 0.23 -14.75 16 22 C 0.11 5.57 11.15 84.50 0.94 6.51 16 23 N -0.58 -30.38 7.85 -193.53 -1.52 -31.90 16 24 C -0.10 -2.45 6.77 31.12 0.21 -2.24 16 25 C -0.13 -2.76 7.74 31.12 0.24 -2.52 16 26 C -0.10 -2.18 7.22 31.18 0.22 -1.96 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 31 H 0.09 1.58 8.13 -2.38 -0.02 1.56 16 32 H 0.42 15.70 6.48 -92.71 -0.60 15.10 16 33 H 0.13 6.82 5.85 -2.91 -0.02 6.80 16 34 H 0.29 12.30 8.29 -92.71 -0.77 11.53 16 35 H 0.12 5.24 8.06 -2.91 -0.02 5.21 16 36 H 0.15 6.23 8.06 -2.91 -0.02 6.21 16 37 H 0.07 2.17 7.43 -2.39 -0.02 2.16 16 38 H 0.12 2.60 7.43 -2.39 -0.02 2.58 16 39 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 1.90 8.08 -2.38 -0.02 1.88 16 41 H 0.13 2.05 8.09 -2.39 -0.02 2.03 16 42 H 0.08 1.94 8.10 -2.39 -0.02 1.92 16 Total: -1.00 -67.44 355.11 5.25 -62.20 By element: Atomic # 1 Polarization: 42.94 SS G_CDS: 0.45 Total: 43.39 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 5.77 Total: 5.24 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -2.90 Total: -98.25 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -0.11 Total: -49.38 kcal Atomic # 14 Polarization: 34.78 SS G_CDS: 2.03 Total: 36.81 kcal Total: -67.44 5.25 -62.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541069082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.759 kcal (2) G-P(sol) polarization free energy of solvation -67.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds