Wall clock time and date at job start Tue Mar 31 2020 13:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21245 * 120.00200 * 2 1 4 4 C 1.47193 * 119.99766 * 179.97438 * 2 1 3 5 5 C 1.39760 * 120.13641 * 103.82248 * 4 2 1 6 6 C 1.38569 * 119.74689 * 179.97438 * 5 4 2 7 7 N 1.39718 * 119.99506 * 180.02562 * 6 5 4 8 8 C 1.46841 * 110.99677 * 304.20980 * 7 6 5 9 9 C 1.53044 * 109.52089 * 174.16027 * 8 7 6 10 10 C 1.53113 * 109.27895 * 59.17687 * 9 8 7 11 11 C 1.50699 * 109.52157 * 182.44076 * 10 9 8 12 12 H 1.08005 * 120.00022 * 119.68378 * 11 10 9 13 13 C 1.37873 * 120.00302 * 299.68464 * 11 10 9 14 14 N 1.31513 * 120.00340 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99943 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46939 * 90.00047 * 15 13 11 17 17 H 1.48501 * 109.47213 * 210.00653 * 15 13 11 18 18 H 1.48501 * 109.46919 * 330.00170 * 15 13 11 19 19 C 1.53120 * 109.16254 * 302.34426 * 10 9 8 20 20 C 1.46842 * 111.00092 * 179.97438 * 7 6 5 21 21 C 1.39067 * 120.01849 * 359.97438 * 6 5 4 22 22 C 1.38252 * 120.27364 * 359.97438 * 21 6 5 23 23 C 1.37947 * 120.25400 * 359.78347 * 22 21 6 24 24 N 1.48021 * 120.00934 * 180.23133 * 23 22 21 25 25 O 1.21802 * 120.00187 * 354.09502 * 24 23 22 26 26 O 1.21805 * 120.00049 * 174.08797 * 24 23 22 27 27 H 1.08996 * 109.47254 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47107 * 300.00167 * 1 2 3 29 29 H 1.08998 * 109.47281 * 60.00612 * 1 2 3 30 30 H 1.08007 * 120.13105 * 359.95144 * 5 4 2 31 31 H 1.08996 * 109.46359 * 294.16876 * 8 7 6 32 32 H 1.09000 * 109.46514 * 54.14220 * 8 7 6 33 33 H 1.09000 * 109.50252 * 299.23262 * 9 8 7 34 34 H 1.08997 * 109.50035 * 179.12031 * 9 8 7 35 35 H 1.08997 * 109.52707 * 62.25025 * 10 9 8 36 36 H 0.97005 * 120.00235 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.50512 * 297.71860 * 19 10 9 38 38 H 1.09000 * 109.53785 * 177.61425 * 19 10 9 39 39 H 1.08991 * 109.46658 * 305.85610 * 20 7 6 40 40 H 1.08999 * 109.45921 * 65.82851 * 20 7 6 41 41 H 1.08001 * 119.86315 * 180.02562 * 21 6 5 42 42 H 1.08001 * 119.86592 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2748 0.0006 5 6 2.8438 -1.7386 -1.1729 6 6 3.5351 -2.9395 -1.1631 7 7 4.1383 -3.4078 -2.3331 8 6 3.1604 -3.5129 -3.4235 9 6 3.8798 -3.8872 -4.7214 10 6 4.6049 -5.2222 -4.5305 11 6 5.3644 -5.5667 -5.7857 12 1 6.4372 -5.6869 -5.7520 13 6 4.6898 -5.7285 -6.9772 14 7 5.3525 -6.0296 -8.0725 15 14 2.8342 -5.5214 -7.0355 16 1 2.5034 -4.1033 -7.3272 17 1 2.2724 -6.3900 -8.1009 18 1 2.2518 -5.9061 -5.7248 19 6 5.5824 -5.1002 -3.3583 20 6 4.8140 -4.6905 -2.0998 21 6 3.6296 -3.6783 0.0113 22 6 3.0364 -3.2197 1.1728 23 6 2.3497 -2.0233 1.1771 24 7 1.7210 -1.5349 2.4250 25 8 1.7166 -2.2373 3.4200 26 8 1.2082 -0.4305 2.4568 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 2.7694 -1.1634 -2.0841 31 1 2.4266 -4.2814 -3.1805 32 1 2.6548 -2.5558 -3.5515 33 1 4.6041 -3.1123 -4.9725 34 1 3.1517 -3.9805 -5.5271 35 1 3.8769 -6.0050 -4.3177 36 1 4.8779 -6.1431 -8.9109 37 1 6.3335 -4.3443 -3.5879 38 1 6.0713 -6.0597 -3.1899 39 1 5.5092 -4.5885 -1.2666 40 1 4.0727 -5.4536 -1.8628 41 1 4.1694 -4.6137 0.0162 42 1 3.1143 -3.7985 2.0813 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000561266335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:54 Heat of formation + Delta-G solvation = -0.880776 kcal Electronic energy + Delta-G solvation = -26699.151544 eV Core-core repulsion = 22840.934626 eV Total energy + Delta-G solvation = -3858.216919 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.46732 -40.85126 -39.60517 -37.90706 -36.75812 -34.68664 -32.50443 -32.24314 -30.89469 -30.54642 -29.88151 -27.07211 -25.39819 -24.80152 -22.91561 -22.58633 -21.75944 -20.58373 -19.47051 -19.02457 -18.66929 -17.75461 -17.60355 -16.95156 -16.35030 -16.07979 -15.56130 -15.05959 -14.86865 -14.81628 -14.55277 -14.10083 -13.92237 -13.41488 -13.20278 -13.06257 -12.86851 -12.63361 -12.41053 -12.22841 -12.15984 -11.89807 -11.75256 -11.39603 -11.32597 -11.18552 -10.93840 -10.46965 -10.37261 -10.25992 -10.16212 -9.89288 -9.72553 -9.37391 -9.18728 -8.70331 -8.39629 -6.22434 -4.22827 -0.43542 0.46063 1.08490 1.18398 1.49347 2.79360 3.10083 3.18664 3.22495 3.26572 3.54295 3.99023 4.23959 4.33048 4.46204 4.55772 4.69616 4.86554 4.96202 5.02306 5.09353 5.10122 5.18812 5.24772 5.33327 5.34265 5.38138 5.52251 5.62494 5.63162 5.68052 5.77717 5.96640 6.06592 6.16682 6.39511 6.41367 6.55967 6.78505 6.86080 6.97671 6.98977 7.30738 7.43334 7.57862 8.35434 8.81570 9.38783 10.90873 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022505 B = 0.003205 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.857665 B = 8735.390715 C = 9397.333093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.409 3.591 3 O -0.431 6.431 4 C -0.058 4.058 5 C -0.119 4.119 6 C 0.185 3.815 7 N -0.477 5.477 8 C 0.055 3.945 9 C -0.123 4.123 10 C 0.012 3.988 11 C -0.515 4.515 12 H 0.075 0.925 13 C 0.070 3.930 14 N -0.897 5.897 15 Si 0.884 3.116 16 H -0.277 1.277 17 H -0.295 1.295 18 H -0.267 1.267 19 C -0.099 4.099 20 C 0.043 3.957 21 C -0.170 4.170 22 C -0.018 4.018 23 C -0.068 4.068 24 N 0.038 4.962 25 O -0.158 6.158 26 O -0.176 6.176 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.153 0.847 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.026 0.974 36 H 0.265 0.735 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.051 0.949 41 H 0.157 0.843 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.636 5.688 16.235 19.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.283 3.717 3 O -0.303 6.303 4 C -0.062 4.062 5 C -0.140 4.140 6 C 0.082 3.918 7 N -0.188 5.188 8 C -0.069 4.069 9 C -0.160 4.160 10 C -0.007 4.007 11 C -0.553 4.553 12 H 0.093 0.907 13 C -0.132 4.132 14 N -0.535 5.535 15 Si 0.714 3.286 16 H -0.204 1.204 17 H -0.222 1.222 18 H -0.193 1.193 19 C -0.137 4.137 20 C -0.082 4.082 21 C -0.192 4.192 22 C -0.037 4.037 23 C -0.153 4.153 24 N 0.554 4.446 25 O -0.375 6.375 26 O -0.386 6.386 27 H 0.094 0.906 28 H 0.128 0.872 29 H 0.118 0.882 30 H 0.171 0.829 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.174 0.826 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.631 6.293 15.155 18.097 hybrid contribution -1.536 -0.338 0.319 1.605 sum -9.167 5.954 15.474 18.946 Atomic orbital electron populations 1.22207 0.91940 1.04791 1.05790 1.22435 0.92289 0.86647 0.70365 1.90609 1.71959 1.33142 1.34584 1.20287 0.97393 0.96423 0.92074 1.20826 0.99594 0.96168 0.97414 1.19469 0.87809 0.92646 0.91866 1.58785 1.27012 1.29116 1.03873 1.22508 0.92146 1.01145 0.91059 1.22174 0.99478 1.01576 0.92788 1.19217 0.94457 0.91944 0.95037 1.20977 0.95688 1.47795 0.90835 0.90673 1.25037 0.98006 0.94481 0.95653 1.69885 1.35990 1.47977 0.99660 0.86902 0.86502 0.77601 0.77577 1.20432 1.22237 1.19252 1.21575 0.98550 1.01132 0.92444 1.22609 0.97774 0.86907 1.00955 1.21556 1.04299 1.01687 0.91648 1.20814 0.91339 0.91685 0.99909 1.20846 1.10273 1.00012 0.84205 1.43506 0.98546 1.00167 1.02423 1.94527 1.63027 1.55389 1.24551 1.94519 1.46677 1.07018 1.90372 0.90598 0.87152 0.88249 0.82933 0.93310 0.90604 0.90654 0.92332 0.95598 0.92501 0.91318 0.91211 0.90275 0.93056 0.82552 0.82518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.60 9.47 36.01 0.34 -1.26 16 2 C 0.41 4.84 4.53 -30.67 -0.14 4.70 16 3 O -0.43 -6.44 17.86 5.59 0.10 -6.34 16 4 C -0.06 -0.68 5.46 -105.09 -0.57 -1.25 16 5 C -0.12 -1.32 8.90 -38.89 -0.35 -1.67 16 6 C 0.19 2.11 5.64 -83.83 -0.47 1.63 16 7 N -0.48 -6.26 4.70 -171.20 -0.80 -7.07 16 8 C 0.06 0.78 5.26 -3.83 -0.02 0.76 16 9 C -0.12 -2.25 4.84 -26.65 -0.13 -2.38 16 10 C 0.01 0.25 1.75 -91.65 -0.16 0.09 16 11 C -0.52 -13.20 9.14 -34.44 -0.31 -13.52 16 12 H 0.08 2.11 7.99 -52.48 -0.42 1.69 16 13 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 14 N -0.90 -26.08 13.96 55.43 0.77 -25.30 16 15 Si 0.88 20.10 24.37 -169.99 -4.14 15.96 16 16 H -0.28 -6.10 6.89 56.52 0.39 -5.71 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.27 -5.69 6.53 56.52 0.37 -5.32 16 19 C -0.10 -1.63 5.32 -26.65 -0.14 -1.78 16 20 C 0.04 0.55 4.15 -3.84 -0.02 0.53 16 21 C -0.17 -1.62 8.82 -39.27 -0.35 -1.97 16 22 C -0.02 -0.17 9.54 -39.68 -0.38 -0.55 16 23 C -0.07 -0.79 6.87 -79.45 -0.55 -1.34 16 24 N 0.04 0.49 4.45 34.20 0.15 0.64 16 25 O -0.16 -2.08 18.46 -29.46 -0.54 -2.62 16 26 O -0.18 -2.42 15.11 -29.48 -0.45 -2.86 16 27 H 0.07 0.55 7.99 -51.93 -0.41 0.14 16 28 H 0.11 0.92 7.45 -51.93 -0.39 0.53 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.15 1.57 7.14 -52.48 -0.37 1.19 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.92 6.70 -51.93 -0.35 0.57 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.06 1.15 3.38 -51.93 -0.18 0.98 16 35 H 0.03 0.54 7.19 -51.93 -0.37 0.17 16 36 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.08 0.83 6.97 -51.93 -0.36 0.47 16 40 H 0.05 0.60 7.73 -51.93 -0.40 0.20 16 41 H 0.16 1.20 5.78 -52.49 -0.30 0.90 16 42 H 0.16 1.18 7.61 -52.49 -0.40 0.78 16 LS Contribution 339.52 15.07 5.12 5.12 Total: -1.00 -30.31 339.52 -8.39 -38.70 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.25 Total: -0.02 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -3.34 Total: -16.20 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.12 Total: -31.73 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -0.89 Total: -11.82 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.14 Total: 15.96 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.31 -8.39 -38.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561266335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.819 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds