Wall clock time and date at job start Tue Mar 31 2020 13:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21245 * 120.00200 * 2 1 4 4 C 1.47193 * 119.99766 * 179.97438 * 2 1 3 5 5 C 1.39760 * 120.13641 * 103.82248 * 4 2 1 6 6 C 1.38569 * 119.74689 * 179.97438 * 5 4 2 7 7 N 1.39718 * 119.99506 * 180.02562 * 6 5 4 8 8 C 1.46841 * 110.99677 * 304.20980 * 7 6 5 9 9 C 1.53044 * 109.52089 * 174.16027 * 8 7 6 10 10 C 1.53113 * 109.27895 * 59.17687 * 9 8 7 11 11 C 1.50699 * 109.52157 * 182.44076 * 10 9 8 12 12 H 1.08005 * 120.00022 * 119.68378 * 11 10 9 13 13 C 1.37873 * 120.00302 * 299.68464 * 11 10 9 14 14 N 1.31513 * 120.00340 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99943 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46939 * 90.00047 * 15 13 11 17 17 H 1.48501 * 109.47213 * 210.00653 * 15 13 11 18 18 H 1.48501 * 109.46919 * 330.00170 * 15 13 11 19 19 C 1.53120 * 109.16254 * 302.34426 * 10 9 8 20 20 C 1.46842 * 111.00092 * 179.97438 * 7 6 5 21 21 C 1.39067 * 120.01849 * 359.97438 * 6 5 4 22 22 C 1.38252 * 120.27364 * 359.97438 * 21 6 5 23 23 C 1.37947 * 120.25400 * 359.78347 * 22 21 6 24 24 N 1.48021 * 120.00934 * 180.23133 * 23 22 21 25 25 O 1.21802 * 120.00187 * 354.09502 * 24 23 22 26 26 O 1.21805 * 120.00049 * 174.08797 * 24 23 22 27 27 H 1.08996 * 109.47254 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47107 * 300.00167 * 1 2 3 29 29 H 1.08998 * 109.47281 * 60.00612 * 1 2 3 30 30 H 1.08007 * 120.13105 * 359.95144 * 5 4 2 31 31 H 1.08996 * 109.46359 * 294.16876 * 8 7 6 32 32 H 1.09000 * 109.46514 * 54.14220 * 8 7 6 33 33 H 1.09000 * 109.50252 * 299.23262 * 9 8 7 34 34 H 1.08997 * 109.50035 * 179.12031 * 9 8 7 35 35 H 1.08997 * 109.52707 * 62.25025 * 10 9 8 36 36 H 0.97005 * 120.00235 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.50512 * 297.71860 * 19 10 9 38 38 H 1.09000 * 109.53785 * 177.61425 * 19 10 9 39 39 H 1.08991 * 109.46658 * 305.85610 * 20 7 6 40 40 H 1.08999 * 109.45921 * 65.82851 * 20 7 6 41 41 H 1.08001 * 119.86315 * 180.02562 * 21 6 5 42 42 H 1.08001 * 119.86592 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2748 0.0006 5 6 2.8438 -1.7386 -1.1729 6 6 3.5351 -2.9395 -1.1631 7 7 4.1383 -3.4078 -2.3331 8 6 3.1604 -3.5129 -3.4235 9 6 3.8798 -3.8872 -4.7214 10 6 4.6049 -5.2222 -4.5305 11 6 5.3644 -5.5667 -5.7857 12 1 6.4372 -5.6869 -5.7520 13 6 4.6898 -5.7285 -6.9772 14 7 5.3525 -6.0296 -8.0725 15 14 2.8342 -5.5214 -7.0355 16 1 2.5034 -4.1033 -7.3272 17 1 2.2724 -6.3900 -8.1009 18 1 2.2518 -5.9061 -5.7248 19 6 5.5824 -5.1002 -3.3583 20 6 4.8140 -4.6905 -2.0998 21 6 3.6296 -3.6783 0.0113 22 6 3.0364 -3.2197 1.1728 23 6 2.3497 -2.0233 1.1771 24 7 1.7210 -1.5349 2.4250 25 8 1.7166 -2.2373 3.4200 26 8 1.2082 -0.4305 2.4568 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 2.7694 -1.1634 -2.0841 31 1 2.4266 -4.2814 -3.1805 32 1 2.6548 -2.5558 -3.5515 33 1 4.6041 -3.1123 -4.9725 34 1 3.1517 -3.9805 -5.5271 35 1 3.8769 -6.0050 -4.3177 36 1 4.8779 -6.1431 -8.9109 37 1 6.3335 -4.3443 -3.5879 38 1 6.0713 -6.0597 -3.1899 39 1 5.5092 -4.5885 -1.2666 40 1 4.0727 -5.4536 -1.8628 41 1 4.1694 -4.6137 0.0162 42 1 3.1143 -3.7985 2.0813 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000561266335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:54 Heat of formation + Delta-G solvation = -19.123280 kcal Electronic energy + Delta-G solvation = -26699.942599 eV Core-core repulsion = 22840.934626 eV Total energy + Delta-G solvation = -3859.007973 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.39857 -41.78096 -40.58715 -38.95577 -37.72904 -36.07942 -33.99729 -33.34345 -32.00332 -31.66035 -30.68134 -28.39381 -26.64765 -25.73590 -24.11777 -23.72996 -22.84607 -21.52583 -20.76509 -19.97499 -19.63345 -18.85912 -18.69458 -18.54711 -17.23290 -17.05623 -16.52839 -16.42567 -15.99930 -15.76092 -15.51808 -15.20513 -15.04285 -14.88018 -14.40143 -14.16341 -14.02253 -13.60636 -13.55696 -13.30215 -13.18236 -12.95832 -12.74265 -12.71022 -12.38609 -12.31049 -12.19474 -12.14379 -11.74603 -11.63138 -11.26884 -11.11678 -11.00626 -10.87511 -10.65178 -10.50420 -9.31267 -8.29326 -6.33703 -1.35560 -0.31681 0.17142 0.29149 0.62064 1.29739 1.35398 1.45810 1.97230 2.32129 2.36635 2.67048 3.06185 3.20442 3.57865 3.60990 3.74920 3.86037 3.96668 4.02173 4.12648 4.20223 4.30319 4.37549 4.43640 4.47713 4.53027 4.57496 4.60203 4.64583 4.68550 4.84693 4.86354 4.97335 5.00636 5.08791 5.15713 5.28693 5.49471 5.64668 5.71296 5.76619 5.95037 6.11995 6.31711 6.43762 6.74940 7.32065 8.87849 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022505 B = 0.003205 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.857665 B = 8735.390715 C = 9397.333093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.409 3.591 3 O -0.473 6.473 4 C -0.069 4.069 5 C -0.118 4.118 6 C 0.181 3.819 7 N -0.489 5.489 8 C 0.062 3.938 9 C -0.120 4.120 10 C 0.009 3.991 11 C -0.517 4.517 12 H 0.030 0.970 13 C 0.006 3.994 14 N -0.954 5.954 15 Si 0.948 3.052 16 H -0.265 1.265 17 H -0.305 1.305 18 H -0.237 1.237 19 C -0.096 4.096 20 C 0.050 3.950 21 C -0.156 4.156 22 C -0.008 4.008 23 C -0.076 4.076 24 N 0.038 4.962 25 O -0.155 6.155 26 O -0.204 6.204 27 H 0.089 0.911 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.158 0.842 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.030 0.970 36 H 0.264 0.736 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.183 0.817 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.685 5.368 18.642 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.286 3.714 3 O -0.348 6.348 4 C -0.072 4.072 5 C -0.139 4.139 6 C 0.078 3.922 7 N -0.201 5.201 8 C -0.062 4.062 9 C -0.158 4.158 10 C -0.010 4.010 11 C -0.555 4.555 12 H 0.048 0.952 13 C -0.190 4.190 14 N -0.595 5.595 15 Si 0.775 3.225 16 H -0.191 1.191 17 H -0.233 1.233 18 H -0.160 1.160 19 C -0.134 4.134 20 C -0.076 4.076 21 C -0.178 4.178 22 C -0.028 4.028 23 C -0.162 4.162 24 N 0.550 4.450 25 O -0.374 6.374 26 O -0.408 6.408 27 H 0.108 0.892 28 H 0.128 0.872 29 H 0.138 0.862 30 H 0.176 0.824 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.127 0.873 40 H 0.090 0.910 41 H 0.200 0.800 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -9.706 6.017 17.603 20.983 hybrid contribution -0.744 -0.308 -0.410 0.903 sum -10.450 5.709 17.193 20.914 Atomic orbital electron populations 1.22260 0.89511 1.06004 1.06674 1.22982 0.93703 0.86178 0.68564 1.90595 1.72935 1.34427 1.36805 1.20330 0.97923 0.96533 0.92406 1.20882 0.99305 0.96277 0.97476 1.19439 0.88235 0.92815 0.91701 1.58675 1.27382 1.29589 1.04418 1.22374 0.91969 1.02767 0.89112 1.21965 0.98974 0.99682 0.95187 1.19203 0.94940 0.93097 0.93714 1.21398 0.94247 1.46448 0.93444 0.95169 1.25973 1.03479 0.94423 0.95152 1.70068 1.38266 1.50631 1.00525 0.85851 0.80113 0.77954 0.78567 1.19111 1.23284 1.16013 1.21442 0.97834 1.00861 0.93258 1.22568 0.98431 0.87318 0.99261 1.21800 1.03359 1.02078 0.90558 1.21102 0.89994 0.90781 1.00892 1.21045 1.10861 1.00881 0.83403 1.43729 0.98405 0.99990 1.02848 1.94505 1.62665 1.55147 1.25089 1.94528 1.47932 1.07603 1.90725 0.89236 0.87180 0.86221 0.82426 0.91930 0.88413 0.92333 0.93481 0.95196 0.92721 0.93155 0.91207 0.87348 0.91005 0.79976 0.80152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.79 9.47 71.24 0.67 -2.12 16 2 C 0.41 9.11 4.53 28.04 0.13 9.24 16 3 O -0.47 -13.95 17.86 -2.92 -0.05 -14.00 16 4 C -0.07 -1.42 5.46 -20.17 -0.11 -1.53 16 5 C -0.12 -2.27 8.90 22.72 0.20 -2.06 16 6 C 0.18 3.34 5.64 38.16 0.22 3.55 16 7 N -0.49 -10.96 4.70 -695.57 -3.27 -14.23 16 8 C 0.06 1.51 5.26 86.33 0.45 1.96 16 9 C -0.12 -4.19 4.84 30.65 0.15 -4.04 16 10 C 0.01 0.37 1.75 -11.46 -0.02 0.35 16 11 C -0.52 -27.32 9.14 25.60 0.23 -27.08 16 12 H 0.03 1.80 7.99 -2.91 -0.02 1.77 16 13 C 0.01 0.34 5.45 84.65 0.46 0.80 16 14 N -0.95 -57.88 13.96 21.45 0.30 -57.58 16 15 Si 0.95 41.23 24.37 68.60 1.67 42.90 16 16 H -0.27 -10.90 6.89 99.48 0.69 -10.21 16 17 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 18 H -0.24 -9.01 6.53 99.48 0.65 -8.37 16 19 C -0.10 -3.02 5.32 30.65 0.16 -2.86 16 20 C 0.05 1.05 4.15 86.33 0.36 1.40 16 21 C -0.16 -2.18 8.82 22.47 0.20 -1.99 16 22 C -0.01 -0.12 9.54 22.20 0.21 0.09 16 23 C -0.08 -1.55 6.87 36.70 0.25 -1.30 16 24 N 0.04 0.90 4.45 -45.70 -0.20 0.70 16 25 O -0.15 -3.69 18.46 18.88 0.35 -3.34 16 26 O -0.20 -5.40 15.11 18.89 0.29 -5.11 16 27 H 0.09 1.07 7.99 -2.39 -0.02 1.05 16 28 H 0.11 1.69 7.45 -2.38 -0.02 1.67 16 29 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.16 2.80 7.14 -2.91 -0.02 2.78 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 1.98 6.70 -2.39 -0.02 1.97 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.05 1.74 3.38 -2.39 -0.01 1.73 16 35 H 0.03 1.17 7.19 -2.39 -0.02 1.15 16 36 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 37 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.11 1.71 6.97 -2.39 -0.02 1.69 16 40 H 0.07 1.28 7.73 -2.39 -0.02 1.26 16 41 H 0.18 1.63 5.78 -2.91 -0.02 1.61 16 42 H 0.18 1.82 7.61 -2.91 -0.02 1.80 16 Total: -1.00 -69.94 339.52 3.63 -66.31 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.98 Total: 9.94 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 3.57 Total: -25.58 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -3.17 Total: -71.11 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.58 Total: -22.46 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 1.67 Total: 42.90 kcal Total: -69.94 3.63 -66.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561266335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.186 kcal (2) G-P(sol) polarization free energy of solvation -69.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds