Wall clock time and date at job start Tue Mar 31 2020 12:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.55132 * 2 1 4 4 C 1.54991 * 110.62069 * 123.05203 * 2 1 3 5 5 C 1.54810 * 102.09170 * 155.52350 * 4 2 1 6 6 H 1.09001 * 110.59773 * 220.38371 * 5 4 2 7 7 N 1.46504 * 110.48423 * 97.80196 * 5 4 2 8 8 C 1.34777 * 119.99966 * 158.78319 * 7 5 4 9 9 O 1.21358 * 119.99762 * 359.97438 * 8 7 5 10 10 C 1.49348 * 120.00013 * 180.27232 * 8 7 5 11 11 O 1.21379 * 120.00033 * 359.71780 * 10 8 7 12 12 N 1.34775 * 120.00315 * 179.72108 * 10 8 7 13 13 C 1.39743 * 120.00565 * 174.88930 * 12 10 8 14 14 C 1.39345 * 119.95088 * 325.52681 * 13 12 10 15 15 C 1.38468 * 120.42019 * 179.75646 * 14 13 12 16 16 C 1.37691 * 120.32959 * 0.52059 * 15 14 13 17 17 C 1.40750 * 119.89875 * 359.73672 * 16 15 14 18 18 C 1.41413 * 120.21096 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99852 * 25.13833 * 18 17 16 20 20 C 1.39924 * 119.99815 * 205.14149 * 18 17 16 21 21 N 1.30826 * 120.00382 * 16.78705 * 20 18 17 22 22 Si 1.86807 * 119.99767 * 196.78586 * 20 18 17 23 23 H 1.48501 * 109.46874 * 89.99995 * 22 20 18 24 24 H 1.48502 * 109.47113 * 209.99711 * 22 20 18 25 25 H 1.48494 * 109.46938 * 329.99986 * 22 20 18 26 26 C 1.38303 * 119.95351 * 145.79906 * 13 12 10 27 27 C 1.54093 * 104.19026 * 339.12403 * 5 4 2 28 28 O 1.43748 * 107.29127 * 357.96600 * 27 5 4 29 29 H 1.08994 * 109.47134 * 181.42720 * 1 2 3 30 30 H 1.09005 * 109.46938 * 301.41973 * 1 2 3 31 31 H 1.09004 * 109.47185 * 61.42174 * 1 2 3 32 32 H 1.09002 * 110.90605 * 37.32356 * 4 2 1 33 33 H 1.09007 * 110.90809 * 273.72568 * 4 2 1 34 34 H 0.96996 * 120.00182 * 338.77210 * 7 5 4 35 35 H 0.97009 * 119.99723 * 354.89122 * 12 10 8 36 36 H 1.08001 * 119.78746 * 0.02562 * 14 13 12 37 37 H 1.08001 * 119.83369 * 180.23269 * 15 14 13 38 38 H 1.08000 * 120.05384 * 179.76424 * 16 15 14 39 39 H 0.97003 * 120.00523 * 180.02562 * 21 20 18 40 40 H 1.08005 * 120.16555 * 359.95632 * 26 13 12 41 41 H 1.08994 * 109.88386 * 117.39238 * 27 5 4 42 42 H 1.09006 * 109.87711 * 238.39819 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0759 -0.7912 1.2159 5 6 3.4795 -1.2178 0.7215 6 1 3.6998 -2.2402 1.0285 7 7 4.5025 -0.2998 1.2287 8 6 5.7896 -0.6945 1.2932 9 8 6.1010 -1.8103 0.9317 10 6 6.8316 0.2392 1.8159 11 8 6.5201 1.3551 2.1777 12 7 8.1178 -0.1573 1.8858 13 6 9.1084 0.7490 2.2732 14 6 9.0030 2.0909 1.9129 15 6 9.9764 2.9982 2.2958 16 6 11.0654 2.5819 3.0284 17 6 11.1883 1.2286 3.3953 18 6 12.3036 0.7939 4.1481 19 1 12.8343 1.4915 4.7790 20 6 12.7197 -0.5401 4.0756 21 7 12.3103 -1.3005 3.0929 22 14 13.8597 -1.2352 5.3820 23 1 13.0527 -1.8067 6.4899 24 1 14.7054 -2.3001 4.7852 25 1 14.7272 -0.1515 5.9093 26 6 10.1948 0.3117 3.0089 27 6 3.3840 -1.1240 -0.8136 28 8 2.0384 -0.7335 -1.1349 29 1 -0.3633 -1.0273 0.0256 30 1 -0.3633 0.5358 0.8770 31 1 -0.3634 0.4916 -0.9025 32 1 1.4550 -1.6627 1.4233 33 1 2.1509 -0.1507 2.0948 34 1 4.2536 0.5919 1.5178 35 1 8.3559 -1.0720 1.6671 36 1 8.1546 2.4262 1.3349 37 1 9.8833 4.0368 2.0145 38 1 11.8238 3.2926 3.3215 39 1 12.5984 -2.2254 3.0428 40 1 10.2795 -0.7288 3.2857 41 1 4.0853 -0.3763 -1.1837 42 1 3.6071 -2.0937 -1.2587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567840270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:15 Heat of formation + Delta-G solvation = -94.029774 kcal Electronic energy + Delta-G solvation = -25730.425970 eV Core-core repulsion = 21868.169808 eV Total energy + Delta-G solvation = -3862.256163 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.89761 -39.83110 -38.51721 -37.19259 -35.21540 -34.25483 -33.32764 -32.47147 -30.46656 -29.63734 -28.72164 -26.46515 -25.37471 -24.86007 -22.06208 -21.59319 -21.29815 -20.89211 -19.80373 -18.46167 -17.60274 -17.22288 -16.39249 -15.99477 -15.91498 -15.64537 -15.33197 -15.16000 -14.85649 -14.69291 -14.01531 -13.88602 -13.40578 -13.12757 -12.99493 -12.84508 -12.65751 -12.42384 -12.35910 -12.03106 -11.73687 -11.69793 -11.57117 -11.28311 -11.18067 -11.16632 -10.80175 -10.62627 -10.07007 -10.03138 -9.83023 -9.56325 -9.49366 -9.24821 -9.04806 -7.46787 -7.13664 -6.76564 -4.43224 1.44102 2.37505 2.71201 2.85141 3.05394 3.08534 3.17574 3.45034 3.48448 3.81353 3.89963 4.04047 4.28519 4.52181 4.57013 4.68077 4.72700 4.81747 4.96053 5.18692 5.24065 5.36124 5.49631 5.53506 5.58913 5.62489 5.74728 6.00429 6.17122 6.49252 6.53178 6.54342 6.69957 6.88176 6.98820 7.00767 7.18344 7.44354 7.50829 7.71492 7.83291 7.94795 8.01484 8.20045 8.34273 8.57901 8.82245 8.86606 10.13953 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025173 B = 0.002511 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.043586 B =11146.885651 C =11815.842671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.073 0.927 4 C -0.158 4.158 5 C 0.110 3.890 6 H 0.109 0.891 7 N -0.699 5.699 8 C 0.513 3.487 9 O -0.516 6.516 10 C 0.497 3.503 11 O -0.508 6.508 12 N -0.627 5.627 13 C 0.137 3.863 14 C -0.227 4.227 15 C -0.085 4.085 16 C -0.224 4.224 17 C 0.120 3.880 18 C -0.461 4.461 19 H 0.080 0.920 20 C 0.076 3.924 21 N -0.796 5.796 22 Si 0.909 3.091 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.262 1.262 26 C -0.175 4.175 27 C 0.037 3.963 28 O -0.372 6.372 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.414 0.586 35 H 0.415 0.585 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.281 0.719 40 H 0.125 0.875 41 H 0.066 0.934 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.125 -1.579 -3.810 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 H 0.091 0.909 4 C -0.196 4.196 5 C 0.005 3.995 6 H 0.127 0.873 7 N -0.354 5.354 8 C 0.294 3.706 9 O -0.391 6.391 10 C 0.278 3.722 11 O -0.384 6.384 12 N -0.272 5.272 13 C 0.046 3.954 14 C -0.248 4.248 15 C -0.103 4.103 16 C -0.244 4.244 17 C 0.117 3.883 18 C -0.491 4.491 19 H 0.098 0.902 20 C -0.142 4.142 21 N -0.422 5.422 22 Si 0.734 3.266 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.196 4.196 27 C -0.041 4.041 28 O -0.291 6.291 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.251 0.749 35 H 0.251 0.749 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.143 0.857 41 H 0.084 0.916 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.216 -1.901 -4.139 18.777 hybrid contribution 0.735 -0.434 0.680 1.092 sum -17.481 -2.334 -3.459 17.972 Atomic orbital electron populations 1.21774 0.92787 1.03050 1.02720 1.23196 0.95564 0.95499 0.84693 0.90898 1.23508 0.94682 1.02059 0.99315 1.22402 0.87394 0.95674 0.94036 0.87293 1.45827 1.06223 1.18576 1.64798 1.20409 0.83828 0.87533 0.78855 1.90764 1.81132 1.20414 1.46803 1.19891 0.83852 0.87651 0.80830 1.90771 1.80832 1.20356 1.46408 1.43194 1.05125 1.15165 1.63667 1.17613 0.89070 0.89138 0.99612 1.20264 1.02012 0.92120 1.10387 1.20411 0.94396 0.97029 0.98505 1.21072 0.99654 0.96693 1.06971 1.17374 0.91232 0.90426 0.89317 1.19554 1.11325 0.94559 1.23670 0.90190 1.25902 0.96241 0.96939 0.95103 1.69796 1.38028 1.08058 1.26297 0.86293 0.80038 0.79119 0.81170 1.19303 1.20315 1.18598 1.21119 0.93911 1.01279 1.03306 1.23658 0.84626 1.01682 0.94114 1.88917 1.27621 1.73654 1.38906 0.91671 0.90930 0.91651 0.88611 0.88987 0.74917 0.74870 0.88102 0.88818 0.88658 0.90826 0.85740 0.91552 0.88633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.66 37.16 0.36 -0.52 16 2 C 0.07 0.52 3.98 -25.68 -0.10 0.42 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.16 -1.08 6.22 -24.73 -0.15 -1.24 16 5 C 0.11 1.03 3.35 -66.40 -0.22 0.81 16 6 H 0.11 1.07 7.66 -51.93 -0.40 0.68 16 7 N -0.70 -7.83 5.01 -52.79 -0.26 -8.10 16 8 C 0.51 7.59 7.88 -11.63 -0.09 7.50 16 9 O -0.52 -8.47 16.19 5.49 0.09 -8.38 16 10 C 0.50 8.88 7.61 -11.63 -0.09 8.79 16 11 O -0.51 -9.95 14.22 5.47 0.08 -9.87 16 12 N -0.63 -12.27 5.32 -10.34 -0.05 -12.32 16 13 C 0.14 3.17 6.24 -83.82 -0.52 2.65 16 14 C -0.23 -5.23 8.66 -39.08 -0.34 -5.57 16 15 C -0.08 -1.92 10.01 -39.70 -0.40 -2.32 16 16 C -0.22 -5.43 9.79 -38.83 -0.38 -5.81 16 17 C 0.12 3.12 5.57 -106.85 -0.59 2.53 16 18 C -0.46 -11.94 9.05 -37.74 -0.34 -12.28 16 19 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 20 C 0.08 1.85 5.16 -17.35 -0.09 1.76 16 21 N -0.80 -19.93 10.94 55.55 0.61 -19.32 16 22 Si 0.91 18.32 29.59 -169.99 -5.03 13.29 16 23 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 26 C -0.17 -4.41 8.60 -38.67 -0.33 -4.74 16 27 C 0.04 0.37 7.50 37.73 0.28 0.66 16 28 O -0.37 -3.87 11.22 -35.23 -0.40 -4.27 16 29 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.56 8.05 -51.93 -0.42 0.14 16 33 H 0.09 0.54 7.96 -51.93 -0.41 0.13 16 34 H 0.41 4.19 8.00 -40.82 -0.33 3.86 16 35 H 0.41 7.53 8.30 -40.82 -0.34 7.19 16 36 H 0.10 2.25 6.47 -52.49 -0.34 1.91 16 37 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 38 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 40 H 0.12 3.20 6.17 -52.48 -0.32 2.88 16 41 H 0.07 0.72 7.93 -51.93 -0.41 0.31 16 42 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 356.64 15.07 5.37 5.37 Total: -1.00 -29.38 356.64 -8.09 -37.47 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -5.48 Total: 13.48 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -3.01 Total: -7.35 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.29 Total: -39.74 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.23 Total: -22.52 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.38 -8.09 -37.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567840270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.558 kcal (2) G-P(sol) polarization free energy of solvation -29.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds