Wall clock time and date at job start Tue Mar 31 2020 12:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.55132 * 2 1 4 4 C 1.54991 * 110.62069 * 123.05203 * 2 1 3 5 5 C 1.54810 * 102.09170 * 155.52350 * 4 2 1 6 6 H 1.09001 * 110.59773 * 220.38371 * 5 4 2 7 7 N 1.46504 * 110.48423 * 97.80196 * 5 4 2 8 8 C 1.34777 * 119.99966 * 158.78319 * 7 5 4 9 9 O 1.21358 * 119.99762 * 359.97438 * 8 7 5 10 10 C 1.49348 * 120.00013 * 180.27232 * 8 7 5 11 11 O 1.21379 * 120.00033 * 359.71780 * 10 8 7 12 12 N 1.34775 * 120.00315 * 179.72108 * 10 8 7 13 13 C 1.39743 * 120.00565 * 174.88930 * 12 10 8 14 14 C 1.39345 * 119.95088 * 325.52681 * 13 12 10 15 15 C 1.38468 * 120.42019 * 179.75646 * 14 13 12 16 16 C 1.37691 * 120.32959 * 0.52059 * 15 14 13 17 17 C 1.40750 * 119.89875 * 359.73672 * 16 15 14 18 18 C 1.41413 * 120.21096 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99852 * 25.13833 * 18 17 16 20 20 C 1.39924 * 119.99815 * 205.14149 * 18 17 16 21 21 N 1.30826 * 120.00382 * 16.78705 * 20 18 17 22 22 Si 1.86807 * 119.99767 * 196.78586 * 20 18 17 23 23 H 1.48501 * 109.46874 * 89.99995 * 22 20 18 24 24 H 1.48502 * 109.47113 * 209.99711 * 22 20 18 25 25 H 1.48494 * 109.46938 * 329.99986 * 22 20 18 26 26 C 1.38303 * 119.95351 * 145.79906 * 13 12 10 27 27 C 1.54093 * 104.19026 * 339.12403 * 5 4 2 28 28 O 1.43748 * 107.29127 * 357.96600 * 27 5 4 29 29 H 1.08994 * 109.47134 * 181.42720 * 1 2 3 30 30 H 1.09005 * 109.46938 * 301.41973 * 1 2 3 31 31 H 1.09004 * 109.47185 * 61.42174 * 1 2 3 32 32 H 1.09002 * 110.90605 * 37.32356 * 4 2 1 33 33 H 1.09007 * 110.90809 * 273.72568 * 4 2 1 34 34 H 0.96996 * 120.00182 * 338.77210 * 7 5 4 35 35 H 0.97009 * 119.99723 * 354.89122 * 12 10 8 36 36 H 1.08001 * 119.78746 * 0.02562 * 14 13 12 37 37 H 1.08001 * 119.83369 * 180.23269 * 15 14 13 38 38 H 1.08000 * 120.05384 * 179.76424 * 16 15 14 39 39 H 0.97003 * 120.00523 * 180.02562 * 21 20 18 40 40 H 1.08005 * 120.16555 * 359.95632 * 26 13 12 41 41 H 1.08994 * 109.88386 * 117.39238 * 27 5 4 42 42 H 1.09006 * 109.87711 * 238.39819 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0759 -0.7912 1.2159 5 6 3.4795 -1.2178 0.7215 6 1 3.6998 -2.2402 1.0285 7 7 4.5025 -0.2998 1.2287 8 6 5.7896 -0.6945 1.2932 9 8 6.1010 -1.8103 0.9317 10 6 6.8316 0.2392 1.8159 11 8 6.5201 1.3551 2.1777 12 7 8.1178 -0.1573 1.8858 13 6 9.1084 0.7490 2.2732 14 6 9.0030 2.0909 1.9129 15 6 9.9764 2.9982 2.2958 16 6 11.0654 2.5819 3.0284 17 6 11.1883 1.2286 3.3953 18 6 12.3036 0.7939 4.1481 19 1 12.8343 1.4915 4.7790 20 6 12.7197 -0.5401 4.0756 21 7 12.3103 -1.3005 3.0929 22 14 13.8597 -1.2352 5.3820 23 1 13.0527 -1.8067 6.4899 24 1 14.7054 -2.3001 4.7852 25 1 14.7272 -0.1515 5.9093 26 6 10.1948 0.3117 3.0089 27 6 3.3840 -1.1240 -0.8136 28 8 2.0384 -0.7335 -1.1349 29 1 -0.3633 -1.0273 0.0256 30 1 -0.3633 0.5358 0.8770 31 1 -0.3634 0.4916 -0.9025 32 1 1.4550 -1.6627 1.4233 33 1 2.1509 -0.1507 2.0948 34 1 4.2536 0.5919 1.5178 35 1 8.3559 -1.0720 1.6671 36 1 8.1546 2.4262 1.3349 37 1 9.8833 4.0368 2.0145 38 1 11.8238 3.2926 3.3215 39 1 12.5984 -2.2254 3.0428 40 1 10.2795 -0.7288 3.2857 41 1 4.0853 -0.3763 -1.1837 42 1 3.6071 -2.0937 -1.2587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567840270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:14 Heat of formation + Delta-G solvation = -113.546032 kcal Electronic energy + Delta-G solvation = -25731.272259 eV Core-core repulsion = 21868.169808 eV Total energy + Delta-G solvation = -3863.102451 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.12844 -40.90545 -39.79252 -38.87436 -36.49531 -35.71367 -35.06756 -33.08224 -31.54782 -31.30278 -30.43800 -27.24907 -27.08382 -26.21677 -23.26423 -23.00128 -22.37540 -21.99500 -21.35272 -19.82795 -19.32092 -18.27212 -17.62082 -17.42478 -17.02532 -16.75708 -16.57957 -16.47530 -16.27301 -16.00874 -15.32891 -15.31818 -14.77097 -14.60411 -14.19933 -14.03763 -13.64107 -13.52416 -13.28425 -13.20588 -13.03161 -12.88735 -12.85466 -12.66868 -12.59348 -12.30821 -12.21103 -11.81923 -11.79178 -11.61878 -11.24726 -10.98676 -10.76996 -10.65187 -10.47916 -9.36828 -8.94882 -8.59101 -6.37482 0.06501 0.92775 1.04004 1.20473 1.40338 1.52792 1.53059 2.04260 2.21541 2.51522 2.73331 2.84514 3.26920 3.38103 3.66074 3.68626 3.83077 4.06734 4.14997 4.40106 4.42990 4.61028 4.62254 4.66533 4.70100 4.79183 4.84780 4.91746 4.96442 5.06375 5.10923 5.12060 5.13846 5.30156 5.30581 5.62915 5.71532 5.84419 5.89766 5.98886 6.05996 6.24107 6.40414 6.60356 6.65270 6.84911 6.92117 6.98850 8.32516 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025173 B = 0.002511 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.043586 B =11146.885651 C =11815.842671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.060 3.940 3 H 0.074 0.926 4 C -0.147 4.147 5 C 0.107 3.893 6 H 0.108 0.892 7 N -0.678 5.678 8 C 0.522 3.478 9 O -0.533 6.533 10 C 0.499 3.501 11 O -0.523 6.523 12 N -0.631 5.631 13 C 0.142 3.858 14 C -0.235 4.235 15 C -0.081 4.081 16 C -0.241 4.241 17 C 0.091 3.909 18 C -0.494 4.494 19 H 0.079 0.921 20 C 0.036 3.964 21 N -0.823 5.823 22 Si 0.982 3.018 23 H -0.264 1.264 24 H -0.269 1.269 25 H -0.258 1.258 26 C -0.198 4.198 27 C 0.038 3.962 28 O -0.389 6.389 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.421 0.579 35 H 0.420 0.580 36 H 0.110 0.890 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.289 0.711 40 H 0.112 0.888 41 H 0.054 0.946 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.500 -1.686 -3.340 19.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.003 3.997 3 H 0.092 0.908 4 C -0.184 4.184 5 C 0.003 3.997 6 H 0.126 0.874 7 N -0.333 5.333 8 C 0.303 3.697 9 O -0.410 6.410 10 C 0.281 3.719 11 O -0.400 6.400 12 N -0.277 5.277 13 C 0.049 3.951 14 C -0.256 4.256 15 C -0.100 4.100 16 C -0.261 4.261 17 C 0.088 3.912 18 C -0.524 4.524 19 H 0.098 0.902 20 C -0.179 4.179 21 N -0.448 5.448 22 Si 0.803 3.197 23 H -0.189 1.189 24 H -0.193 1.193 25 H -0.182 1.182 26 C -0.220 4.220 27 C -0.040 4.040 28 O -0.309 6.309 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.260 0.740 35 H 0.257 0.743 36 H 0.128 0.872 37 H 0.144 0.856 38 H 0.123 0.877 39 H 0.099 0.901 40 H 0.130 0.870 41 H 0.073 0.927 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.649 -1.990 -3.686 20.090 hybrid contribution 1.029 -0.340 0.451 1.174 sum -18.619 -2.330 -3.234 19.041 Atomic orbital electron populations 1.21790 0.91397 1.03444 1.03433 1.23425 0.96713 0.95405 0.84172 0.90765 1.23523 0.92713 1.02840 0.99359 1.22581 0.88053 0.95214 0.93822 0.87363 1.45794 1.05151 1.19162 1.63195 1.19763 0.84256 0.86604 0.79120 1.90770 1.81435 1.20787 1.48009 1.20418 0.83761 0.87892 0.79816 1.90751 1.81105 1.21277 1.46826 1.43168 1.05405 1.15014 1.64069 1.17670 0.89170 0.89869 0.98348 1.20486 1.02436 0.92192 1.10520 1.20757 0.93389 0.98615 0.97217 1.21266 1.00731 0.96345 1.07755 1.17774 0.91840 0.91612 0.89974 1.19809 1.12067 0.95807 1.24699 0.90250 1.26732 0.97656 0.96685 0.96839 1.69846 1.38875 1.08611 1.27501 0.85201 0.77946 0.78414 0.78158 1.18875 1.19317 1.18173 1.21051 0.95073 1.00714 1.05145 1.23593 0.84574 1.01420 0.94401 1.88912 1.27525 1.74070 1.40351 0.91501 0.89016 0.92112 0.87012 0.87437 0.74028 0.74263 0.87232 0.85624 0.87684 0.90060 0.87018 0.92749 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.66 71.98 0.70 -0.69 16 2 C 0.06 0.79 3.98 31.28 0.12 0.92 16 3 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.15 -1.61 6.22 31.89 0.20 -1.41 16 5 C 0.11 1.82 3.35 45.98 0.15 1.97 16 6 H 0.11 1.94 7.66 -2.39 -0.02 1.92 16 7 N -0.68 -14.08 5.01 -439.28 -2.20 -16.28 16 8 C 0.52 14.96 7.88 87.24 0.69 15.64 16 9 O -0.53 -17.12 16.19 -3.27 -0.05 -17.17 16 10 C 0.50 17.56 7.61 87.24 0.66 18.22 16 11 O -0.52 -20.02 14.22 -3.34 -0.05 -20.06 16 12 N -0.63 -24.88 5.32 -304.98 -1.62 -26.50 16 13 C 0.14 6.65 6.24 38.16 0.24 6.89 16 14 C -0.24 -10.77 8.66 22.59 0.20 -10.57 16 15 C -0.08 -3.62 10.01 22.20 0.22 -3.40 16 16 C -0.24 -11.78 9.79 22.75 0.22 -11.56 16 17 C 0.09 4.88 5.57 -21.31 -0.12 4.76 16 18 C -0.49 -26.18 9.05 23.46 0.21 -25.97 16 19 H 0.08 4.05 7.90 -2.91 -0.02 4.02 16 20 C 0.04 1.78 5.16 85.25 0.44 2.22 16 21 N -0.82 -41.88 10.94 21.82 0.24 -41.64 16 22 Si 0.98 37.55 29.59 68.60 2.03 39.58 16 23 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 24 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 25 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 26 C -0.20 -10.29 8.60 22.86 0.20 -10.10 16 27 C 0.04 0.72 7.50 72.35 0.54 1.27 16 28 O -0.39 -7.58 11.22 -148.98 -1.67 -9.25 16 29 H 0.07 0.63 8.13 -2.39 -0.02 0.61 16 30 H 0.09 0.53 8.14 -2.38 -0.02 0.52 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 0.94 8.05 -2.39 -0.02 0.92 16 33 H 0.11 0.90 7.96 -2.38 -0.02 0.88 16 34 H 0.42 7.67 8.00 -92.71 -0.74 6.92 16 35 H 0.42 15.51 8.30 -92.70 -0.77 14.74 16 36 H 0.11 4.78 6.47 -2.91 -0.02 4.76 16 37 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 38 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 39 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 40 H 0.11 5.98 6.17 -2.91 -0.02 5.96 16 41 H 0.05 1.15 7.93 -2.39 -0.02 1.14 16 42 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -63.51 356.64 0.91 -62.60 By element: Atomic # 1 Polarization: 40.98 SS G_CDS: -0.44 Total: 40.54 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 4.67 Total: -11.81 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -3.58 Total: -84.42 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -1.77 Total: -46.49 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Total: -63.51 0.91 -62.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567840270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.948 kcal (2) G-P(sol) polarization free energy of solvation -63.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds