Wall clock time and date at job start Tue Mar 31 2020 12:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 110.67600 * 2 1 4 4 C 1.55000 * 110.61738 * 122.95915 * 2 1 3 5 5 C 1.54808 * 102.08929 * 155.52558 * 4 2 1 6 6 H 1.09004 * 110.60053 * 97.85914 * 5 4 2 7 7 N 1.46508 * 110.48624 * 220.44237 * 5 4 2 8 8 C 1.34774 * 119.99855 * 201.22267 * 7 5 4 9 9 O 1.21354 * 120.00368 * 0.02562 * 8 7 5 10 10 C 1.49361 * 119.99740 * 180.02562 * 8 7 5 11 11 O 1.21374 * 119.99853 * 0.02562 * 10 8 7 12 12 N 1.34768 * 120.00097 * 179.97438 * 10 8 7 13 13 C 1.39745 * 120.00385 * 175.11787 * 12 10 8 14 14 C 1.39336 * 119.95363 * 145.72816 * 13 12 10 15 15 C 1.38473 * 120.42617 * 180.02562 * 14 13 12 16 16 C 1.37702 * 120.32240 * 359.95533 * 15 14 13 17 17 C 1.40743 * 119.90006 * 0.02562 * 16 15 14 18 18 C 1.41406 * 120.20778 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99613 * 205.18368 * 18 17 16 20 20 C 1.39929 * 119.99962 * 25.18313 * 18 17 16 21 21 N 1.30823 * 120.00086 * 16.78732 * 20 18 17 22 22 Si 1.86808 * 119.99795 * 196.78255 * 20 18 17 23 23 H 1.48494 * 109.46926 * 90.00064 * 22 20 18 24 24 H 1.48497 * 109.47019 * 210.00279 * 22 20 18 25 25 H 1.48504 * 109.47040 * 329.99778 * 22 20 18 26 26 C 1.38297 * 119.95170 * 325.46288 * 13 12 10 27 27 C 1.54097 * 104.19289 * 339.12125 * 5 4 2 28 28 O 1.43749 * 107.29160 * 357.97026 * 27 5 4 29 29 H 1.08999 * 109.47296 * 181.50825 * 1 2 3 30 30 H 1.08997 * 109.47681 * 301.51849 * 1 2 3 31 31 H 1.09007 * 109.47199 * 61.51229 * 1 2 3 32 32 H 1.08994 * 110.90084 * 37.32955 * 4 2 1 33 33 H 1.08997 * 110.90859 * 273.72285 * 4 2 1 34 34 H 0.96997 * 119.99834 * 21.22525 * 7 5 4 35 35 H 0.97006 * 120.00368 * 354.84830 * 12 10 8 36 36 H 1.08000 * 119.79019 * 0.02562 * 14 13 12 37 37 H 1.07990 * 119.83973 * 179.97438 * 15 14 13 38 38 H 1.08000 * 120.04792 * 180.02562 * 16 15 14 39 39 H 0.97007 * 119.99931 * 180.02562 * 21 20 18 40 40 H 1.08003 * 120.16623 * 359.97382 * 26 13 12 41 41 H 1.09001 * 109.87741 * 117.39202 * 27 5 4 42 42 H 1.09000 * 109.87786 * 238.40025 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9148 1.0199 0.0000 4 6 2.0757 -0.7893 1.2172 5 6 3.4794 -1.2166 0.7236 6 1 4.2422 -0.5348 1.0997 7 7 3.7724 -2.5908 1.1385 8 6 5.0492 -3.0177 1.2025 9 8 5.9561 -2.2636 0.9170 10 6 5.3478 -4.4188 1.6249 11 8 4.4407 -5.1731 1.9100 12 7 6.6245 -4.8459 1.6885 13 6 6.9107 -6.1221 2.1805 14 6 7.9728 -6.8507 1.6488 15 6 8.2648 -8.1164 2.1286 16 6 7.5085 -8.6688 3.1381 17 6 6.4328 -7.9448 3.6854 18 6 5.6522 -8.5055 4.7226 19 1 4.6328 -8.1797 4.8677 20 6 6.2006 -9.4826 5.5609 21 7 7.4975 -9.6463 5.6136 22 14 5.0807 -10.5530 6.6048 23 1 4.7082 -11.7712 5.8417 24 1 5.7902 -10.9457 7.8488 25 1 3.8537 -9.7929 6.9537 26 6 6.1429 -6.6580 3.1983 27 6 3.3840 -1.1254 -0.8117 28 8 2.0384 -0.7353 -1.1337 29 1 -0.3634 -1.0273 0.0270 30 1 -0.3634 0.5372 0.8760 31 1 -0.3634 0.4902 -0.9033 32 1 1.4549 -1.6604 1.4259 33 1 2.1508 -0.1475 2.0950 34 1 3.0475 -3.1934 1.3670 35 1 7.3445 -4.2689 1.3891 36 1 8.5721 -6.4255 0.8573 37 1 9.0899 -8.6728 1.7093 38 1 7.7405 -9.6561 3.5092 39 1 7.8776 -10.3239 6.1945 40 1 5.3224 -6.0924 3.6145 41 1 4.0854 -0.3782 -1.1829 42 1 3.6071 -2.0958 -1.2552 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567840271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:19 Heat of formation + Delta-G solvation = -92.973680 kcal Electronic energy + Delta-G solvation = -25647.433631 eV Core-core repulsion = 21785.223264 eV Total energy + Delta-G solvation = -3862.210367 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.88416 -39.83871 -38.54606 -37.16215 -35.27454 -34.40166 -33.06914 -32.50119 -30.45825 -29.89391 -28.50634 -26.45918 -25.41029 -24.85537 -22.10899 -21.69790 -21.09105 -20.76434 -19.83118 -18.51614 -17.57394 -17.28612 -16.63469 -16.11837 -15.76360 -15.66154 -15.46814 -15.04666 -14.66891 -14.51874 -14.03569 -13.81399 -13.67657 -13.10235 -12.95603 -12.89734 -12.81772 -12.25843 -12.21554 -11.96087 -11.79360 -11.69218 -11.45122 -11.30717 -11.28666 -11.17542 -10.93959 -10.50255 -10.15967 -10.12845 -9.72631 -9.49952 -9.42039 -9.13857 -9.06494 -7.52312 -7.03151 -6.76767 -4.39217 1.43805 2.36287 2.72794 2.87952 3.07184 3.11444 3.17648 3.42298 3.51195 3.76478 3.93114 4.04011 4.33802 4.53899 4.59061 4.60645 4.68843 4.80826 4.93463 5.17688 5.24629 5.34797 5.42521 5.52391 5.60112 5.64295 5.75878 6.05143 6.18248 6.32887 6.50580 6.55629 6.77800 6.95094 6.98455 7.03273 7.19506 7.38944 7.61579 7.70677 7.87482 8.00801 8.05043 8.12422 8.40941 8.61432 8.87345 8.91356 10.17118 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018950 B = 0.002619 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.209205 B =10689.398925 C =11860.038973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 H 0.074 0.926 4 C -0.158 4.158 5 C 0.111 3.889 6 H 0.108 0.892 7 N -0.696 5.696 8 C 0.514 3.486 9 O -0.521 6.521 10 C 0.496 3.504 11 O -0.498 6.498 12 N -0.632 5.632 13 C 0.144 3.856 14 C -0.255 4.255 15 C -0.091 4.091 16 C -0.168 4.168 17 C 0.119 3.881 18 C -0.458 4.458 19 H 0.079 0.921 20 C 0.075 3.925 21 N -0.794 5.794 22 Si 0.910 3.090 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.262 1.262 26 C -0.208 4.208 27 C 0.037 3.963 28 O -0.372 6.372 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.416 0.584 35 H 0.411 0.589 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.281 0.719 40 H 0.106 0.894 41 H 0.070 0.930 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.496 15.591 -7.253 19.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 H 0.092 0.908 4 C -0.196 4.196 5 C 0.006 3.994 6 H 0.126 0.874 7 N -0.351 5.351 8 C 0.295 3.705 9 O -0.397 6.397 10 C 0.277 3.723 11 O -0.372 6.372 12 N -0.277 5.277 13 C 0.052 3.948 14 C -0.276 4.276 15 C -0.111 4.111 16 C -0.187 4.187 17 C 0.116 3.884 18 C -0.487 4.487 19 H 0.097 0.903 20 C -0.142 4.142 21 N -0.419 5.419 22 Si 0.734 3.266 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.230 4.230 27 C -0.041 4.041 28 O -0.291 6.291 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.254 0.746 35 H 0.247 0.753 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.138 0.862 39 H 0.092 0.908 40 H 0.124 0.876 41 H 0.089 0.911 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.438 15.450 -7.301 19.058 hybrid contribution -0.112 -0.413 0.657 0.784 sum -8.550 15.036 -6.644 18.530 Atomic orbital electron populations 1.21778 0.92696 1.03257 1.02678 1.23121 0.95633 0.95338 0.84446 0.90761 1.23512 0.94804 1.01912 0.99406 1.22460 0.98311 0.83753 0.94874 0.87447 1.45817 1.08089 1.13572 1.67586 1.20403 0.83416 0.88623 0.78082 1.90743 1.45005 1.56387 1.47544 1.19888 0.84341 0.87532 0.80587 1.90823 1.44684 1.55233 1.46458 1.43130 1.07278 1.16492 1.60791 1.17441 0.98308 0.83361 0.95654 1.20071 1.03433 0.97567 1.06511 1.20483 0.98724 0.94435 0.97414 1.21397 0.98891 1.00844 0.97585 1.17478 0.91106 0.89223 0.90583 1.19584 0.99691 1.17896 1.11535 0.90271 1.25912 0.95168 0.96375 0.96776 1.69819 1.11658 1.28250 1.32181 0.86283 0.80919 0.80440 0.78923 1.19231 1.20331 1.18582 1.20963 1.04169 0.97227 1.00611 1.23637 0.84551 1.01681 0.94242 1.88931 1.27691 1.73613 1.38859 0.91548 0.90916 0.91616 0.89189 0.88933 0.74638 0.75350 0.88957 0.88769 0.86154 0.90843 0.87601 0.91147 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.66 37.15 0.36 -0.53 16 2 C 0.07 0.53 3.98 -25.68 -0.10 0.43 16 3 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 4 C -0.16 -1.11 6.30 -24.72 -0.16 -1.27 16 5 C 0.11 1.04 3.35 -66.40 -0.22 0.81 16 6 H 0.11 1.02 7.66 -51.93 -0.40 0.62 16 7 N -0.70 -8.00 5.04 -52.78 -0.27 -8.26 16 8 C 0.51 7.50 7.88 -11.63 -0.09 7.41 16 9 O -0.52 -8.19 16.19 5.49 0.09 -8.10 16 10 C 0.50 8.87 7.61 -11.63 -0.09 8.78 16 11 O -0.50 -10.21 14.22 5.48 0.08 -10.13 16 12 N -0.63 -11.74 5.32 -10.34 -0.06 -11.79 16 13 C 0.14 3.23 6.25 -83.82 -0.52 2.71 16 14 C -0.25 -5.57 9.97 -39.09 -0.39 -5.96 16 15 C -0.09 -2.10 10.02 -39.69 -0.40 -2.50 16 16 C -0.17 -4.32 8.69 -38.83 -0.34 -4.66 16 17 C 0.12 3.21 5.57 -106.85 -0.59 2.62 16 18 C -0.46 -12.27 9.05 -37.74 -0.34 -12.61 16 19 H 0.08 2.08 7.90 -52.48 -0.41 1.67 16 20 C 0.08 1.89 5.16 -17.35 -0.09 1.80 16 21 N -0.79 -20.33 10.94 55.55 0.61 -19.72 16 22 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 25 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 26 C -0.21 -5.28 8.39 -38.67 -0.32 -5.60 16 27 C 0.04 0.36 7.50 37.73 0.28 0.65 16 28 O -0.37 -3.84 11.22 -35.23 -0.40 -4.23 16 29 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.63 7.65 -51.93 -0.40 0.23 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.42 4.52 7.82 -40.82 -0.32 4.20 16 35 H 0.41 6.57 8.30 -40.82 -0.34 6.23 16 36 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 38 H 0.12 3.18 6.17 -52.49 -0.32 2.85 16 39 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 40 H 0.11 2.71 6.48 -52.48 -0.34 2.37 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.98 7.93 -51.93 -0.41 0.57 16 LS Contribution 356.38 15.07 5.37 5.37 Total: -1.00 -30.23 356.38 -8.08 -38.31 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -5.46 Total: 12.80 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -3.02 Total: -7.92 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.29 Total: -39.78 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.23 Total: -22.46 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.23 -8.08 -38.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567840271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.661 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds