Wall clock time and date at job start Tue Mar 31 2020 12:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 110.67600 * 2 1 4 4 C 1.55000 * 110.61738 * 122.95915 * 2 1 3 5 5 C 1.54808 * 102.08929 * 155.52558 * 4 2 1 6 6 H 1.09004 * 110.60053 * 97.85914 * 5 4 2 7 7 N 1.46508 * 110.48624 * 220.44237 * 5 4 2 8 8 C 1.34774 * 119.99855 * 201.22267 * 7 5 4 9 9 O 1.21354 * 120.00368 * 0.02562 * 8 7 5 10 10 C 1.49361 * 119.99740 * 180.02562 * 8 7 5 11 11 O 1.21374 * 119.99853 * 0.02562 * 10 8 7 12 12 N 1.34768 * 120.00097 * 179.97438 * 10 8 7 13 13 C 1.39745 * 120.00385 * 175.11787 * 12 10 8 14 14 C 1.39336 * 119.95363 * 145.72816 * 13 12 10 15 15 C 1.38473 * 120.42617 * 180.02562 * 14 13 12 16 16 C 1.37702 * 120.32240 * 359.95533 * 15 14 13 17 17 C 1.40743 * 119.90006 * 0.02562 * 16 15 14 18 18 C 1.41406 * 120.20778 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99613 * 205.18368 * 18 17 16 20 20 C 1.39929 * 119.99962 * 25.18313 * 18 17 16 21 21 N 1.30823 * 120.00086 * 16.78732 * 20 18 17 22 22 Si 1.86808 * 119.99795 * 196.78255 * 20 18 17 23 23 H 1.48494 * 109.46926 * 90.00064 * 22 20 18 24 24 H 1.48497 * 109.47019 * 210.00279 * 22 20 18 25 25 H 1.48504 * 109.47040 * 329.99778 * 22 20 18 26 26 C 1.38297 * 119.95170 * 325.46288 * 13 12 10 27 27 C 1.54097 * 104.19289 * 339.12125 * 5 4 2 28 28 O 1.43749 * 107.29160 * 357.97026 * 27 5 4 29 29 H 1.08999 * 109.47296 * 181.50825 * 1 2 3 30 30 H 1.08997 * 109.47681 * 301.51849 * 1 2 3 31 31 H 1.09007 * 109.47199 * 61.51229 * 1 2 3 32 32 H 1.08994 * 110.90084 * 37.32955 * 4 2 1 33 33 H 1.08997 * 110.90859 * 273.72285 * 4 2 1 34 34 H 0.96997 * 119.99834 * 21.22525 * 7 5 4 35 35 H 0.97006 * 120.00368 * 354.84830 * 12 10 8 36 36 H 1.08000 * 119.79019 * 0.02562 * 14 13 12 37 37 H 1.07990 * 119.83973 * 179.97438 * 15 14 13 38 38 H 1.08000 * 120.04792 * 180.02562 * 16 15 14 39 39 H 0.97007 * 119.99931 * 180.02562 * 21 20 18 40 40 H 1.08003 * 120.16623 * 359.97382 * 26 13 12 41 41 H 1.09001 * 109.87741 * 117.39202 * 27 5 4 42 42 H 1.09000 * 109.87786 * 238.40025 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9148 1.0199 0.0000 4 6 2.0757 -0.7893 1.2172 5 6 3.4794 -1.2166 0.7236 6 1 4.2422 -0.5348 1.0997 7 7 3.7724 -2.5908 1.1385 8 6 5.0492 -3.0177 1.2025 9 8 5.9561 -2.2636 0.9170 10 6 5.3478 -4.4188 1.6249 11 8 4.4407 -5.1731 1.9100 12 7 6.6245 -4.8459 1.6885 13 6 6.9107 -6.1221 2.1805 14 6 7.9728 -6.8507 1.6488 15 6 8.2648 -8.1164 2.1286 16 6 7.5085 -8.6688 3.1381 17 6 6.4328 -7.9448 3.6854 18 6 5.6522 -8.5055 4.7226 19 1 4.6328 -8.1797 4.8677 20 6 6.2006 -9.4826 5.5609 21 7 7.4975 -9.6463 5.6136 22 14 5.0807 -10.5530 6.6048 23 1 4.7082 -11.7712 5.8417 24 1 5.7902 -10.9457 7.8488 25 1 3.8537 -9.7929 6.9537 26 6 6.1429 -6.6580 3.1983 27 6 3.3840 -1.1254 -0.8117 28 8 2.0384 -0.7353 -1.1337 29 1 -0.3634 -1.0273 0.0270 30 1 -0.3634 0.5372 0.8760 31 1 -0.3634 0.4902 -0.9033 32 1 1.4549 -1.6604 1.4259 33 1 2.1508 -0.1475 2.0950 34 1 3.0475 -3.1934 1.3670 35 1 7.3445 -4.2689 1.3891 36 1 8.5721 -6.4255 0.8573 37 1 9.0899 -8.6728 1.7093 38 1 7.7405 -9.6561 3.5092 39 1 7.8776 -10.3239 6.1945 40 1 5.3224 -6.0924 3.6145 41 1 4.0854 -0.3782 -1.1829 42 1 3.6071 -2.0958 -1.2552 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567840271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:18 Heat of formation + Delta-G solvation = -113.672673 kcal Electronic energy + Delta-G solvation = -25648.331206 eV Core-core repulsion = 21785.223264 eV Total energy + Delta-G solvation = -3863.107943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.11900 -40.88267 -39.80243 -38.86719 -36.61772 -35.80627 -34.82189 -33.10631 -31.79967 -31.31103 -30.23240 -27.31499 -27.08329 -26.20733 -23.40526 -22.81696 -22.36057 -22.04613 -21.20378 -19.98453 -19.23651 -18.18424 -17.70059 -17.45797 -17.05396 -16.85446 -16.69263 -16.49923 -16.46162 -15.69955 -15.36829 -14.95028 -14.80690 -14.65432 -14.38025 -14.02736 -13.58471 -13.49649 -13.44802 -13.08973 -13.04434 -12.90644 -12.85781 -12.71078 -12.62697 -12.25501 -12.19309 -11.91070 -11.87134 -11.54700 -11.20315 -10.94506 -10.87559 -10.66573 -10.33888 -9.43853 -8.85585 -8.63829 -6.38549 0.07568 0.93286 1.01022 1.22725 1.37976 1.51084 1.51228 2.05531 2.20948 2.51363 2.71695 2.83635 3.26232 3.38910 3.69776 3.70195 3.90942 3.96643 4.18881 4.41201 4.42816 4.49311 4.57880 4.65495 4.71893 4.82242 4.88650 4.91345 5.05028 5.05652 5.07114 5.10026 5.16036 5.28292 5.29847 5.57065 5.75500 5.83298 5.94316 6.03537 6.06876 6.26571 6.33251 6.61149 6.66945 6.86427 6.94407 6.99632 8.32111 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018950 B = 0.002619 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.209205 B =10689.398925 C =11860.038973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 H 0.090 0.910 4 C -0.151 4.151 5 C 0.108 3.892 6 H 0.112 0.888 7 N -0.681 5.681 8 C 0.525 3.475 9 O -0.530 6.530 10 C 0.495 3.505 11 O -0.527 6.527 12 N -0.628 5.628 13 C 0.150 3.850 14 C -0.247 4.247 15 C -0.090 4.090 16 C -0.193 4.193 17 C 0.090 3.910 18 C -0.498 4.498 19 H 0.068 0.932 20 C 0.037 3.963 21 N -0.821 5.821 22 Si 0.983 3.017 23 H -0.261 1.261 24 H -0.264 1.264 25 H -0.262 1.262 26 C -0.232 4.232 27 C 0.038 3.962 28 O -0.393 6.393 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.420 0.580 35 H 0.425 0.575 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.107 0.893 39 H 0.290 0.710 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.734 16.861 -7.606 20.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 H 0.108 0.892 4 C -0.189 4.189 5 C 0.004 3.996 6 H 0.130 0.870 7 N -0.334 5.334 8 C 0.305 3.695 9 O -0.407 6.407 10 C 0.277 3.723 11 O -0.403 6.403 12 N -0.274 5.274 13 C 0.057 3.943 14 C -0.268 4.268 15 C -0.108 4.108 16 C -0.213 4.213 17 C 0.087 3.913 18 C -0.527 4.527 19 H 0.086 0.914 20 C -0.178 4.178 21 N -0.447 5.447 22 Si 0.803 3.197 23 H -0.185 1.185 24 H -0.188 1.188 25 H -0.186 1.186 26 C -0.253 4.253 27 C -0.040 4.040 28 O -0.313 6.313 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.132 0.868 34 H 0.258 0.742 35 H 0.264 0.736 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.683 16.768 -7.680 20.385 hybrid contribution -0.038 -0.680 0.649 0.941 sum -8.720 16.088 -7.030 19.603 Atomic orbital electron populations 1.21805 0.91794 1.03077 1.03618 1.23362 0.96401 0.95753 0.83459 0.89247 1.23540 0.93001 1.02283 1.00081 1.22680 0.99926 0.82107 0.94863 0.86992 1.45839 1.06917 1.14646 1.66028 1.19690 0.84427 0.86828 0.78551 1.90747 1.45469 1.55978 1.48515 1.20527 0.83617 0.88799 0.79401 1.90814 1.45483 1.56525 1.47443 1.43040 1.08293 1.15421 1.60695 1.17503 0.97563 0.84739 0.94475 1.20487 1.02928 0.96899 1.06472 1.20841 0.98741 0.95052 0.96202 1.21376 0.99907 1.00705 0.99295 1.17820 0.92028 0.90163 0.91307 1.19757 0.99596 1.20235 1.13161 0.91398 1.26714 0.96624 0.96883 0.97566 1.69852 1.13042 1.28838 1.32936 0.85202 0.78687 0.78323 0.77480 1.18528 1.18834 1.18633 1.20944 1.04894 0.97204 1.02303 1.23583 0.84831 1.01282 0.94293 1.88918 1.27810 1.74182 1.40351 0.92355 0.88864 0.91751 0.89110 0.86766 0.74226 0.73634 0.85163 0.85677 0.87522 0.89942 0.89057 0.90310 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.66 71.98 0.70 -0.78 16 2 C 0.07 0.84 3.98 31.28 0.12 0.97 16 3 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 4 C -0.15 -1.77 6.30 31.90 0.20 -1.57 16 5 C 0.11 1.82 3.35 45.98 0.15 1.98 16 6 H 0.11 1.86 7.66 -2.38 -0.02 1.84 16 7 N -0.68 -14.83 5.04 -439.26 -2.21 -17.05 16 8 C 0.53 14.78 7.88 87.24 0.69 15.47 16 9 O -0.53 -15.80 16.19 -3.26 -0.05 -15.85 16 10 C 0.49 17.54 7.61 87.24 0.66 18.21 16 11 O -0.53 -21.99 14.22 -3.32 -0.05 -22.04 16 12 N -0.63 -22.81 5.32 -304.99 -1.62 -24.43 16 13 C 0.15 6.70 6.25 38.16 0.24 6.94 16 14 C -0.25 -10.37 9.97 22.59 0.23 -10.14 16 15 C -0.09 -4.04 10.02 22.20 0.22 -3.81 16 16 C -0.19 -10.18 8.69 22.76 0.20 -9.99 16 17 C 0.09 5.03 5.57 -21.31 -0.12 4.91 16 18 C -0.50 -27.96 9.05 23.46 0.21 -27.75 16 19 H 0.07 3.79 7.90 -2.91 -0.02 3.77 16 20 C 0.04 1.91 5.16 85.25 0.44 2.35 16 21 N -0.82 -42.95 10.94 21.82 0.24 -42.71 16 22 Si 0.98 38.92 29.59 68.60 2.03 40.95 16 23 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 24 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 25 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 26 C -0.23 -12.14 8.39 22.86 0.19 -11.95 16 27 C 0.04 0.70 7.50 72.35 0.54 1.24 16 28 O -0.39 -7.60 11.22 -148.98 -1.67 -9.27 16 29 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.09 1.08 7.65 -2.39 -0.02 1.06 16 33 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.42 8.77 7.82 -92.71 -0.73 8.04 16 35 H 0.43 12.87 8.30 -92.70 -0.77 12.10 16 36 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 37 H 0.13 4.77 8.06 -2.92 -0.02 4.75 16 38 H 0.11 5.82 6.17 -2.91 -0.02 5.80 16 39 H 0.29 13.59 8.30 -92.70 -0.77 12.82 16 40 H 0.09 4.92 6.48 -2.91 -0.02 4.90 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 1.60 7.93 -2.39 -0.02 1.58 16 Total: -1.00 -67.21 356.38 0.92 -66.30 By element: Atomic # 1 Polarization: 38.45 SS G_CDS: -0.42 Total: 38.03 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 4.68 Total: -13.92 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -3.60 Total: -84.19 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -1.77 Total: -47.16 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -67.21 0.92 -66.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567840271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.375 kcal (2) G-P(sol) polarization free energy of solvation -67.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds