Wall clock time and date at job start Tue Mar 31 2020 12:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.27436 * 2 1 4 4 C 1.54949 * 110.30899 * 237.80101 * 2 1 3 5 5 C 1.55305 * 100.94175 * 204.63937 * 4 2 1 6 6 H 1.08998 * 111.01775 * 275.86810 * 5 4 2 7 7 N 1.46492 * 110.84589 * 152.32396 * 5 4 2 8 8 C 1.34778 * 120.00026 * 160.71711 * 7 5 4 9 9 O 1.21358 * 119.99910 * 359.97438 * 8 7 5 10 10 C 1.49357 * 120.00337 * 180.02562 * 8 7 5 11 11 O 1.21369 * 119.99770 * 359.97438 * 10 8 7 12 12 N 1.34773 * 119.99917 * 179.97438 * 10 8 7 13 13 C 1.39745 * 119.99526 * 184.68935 * 12 10 8 14 14 C 1.39351 * 119.94783 * 144.28822 * 13 12 10 15 15 C 1.38475 * 120.41813 * 180.02562 * 14 13 12 16 16 C 1.37690 * 120.33079 * 359.97438 * 15 14 13 17 17 C 1.40750 * 119.89917 * 0.02562 * 16 15 14 18 18 C 1.41408 * 120.20948 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99557 * 151.62537 * 18 17 16 20 20 C 1.39928 * 120.00101 * 331.63723 * 18 17 16 21 21 N 1.30832 * 120.00007 * 161.35681 * 20 18 17 22 22 Si 1.86802 * 119.99910 * 341.35403 * 20 18 17 23 23 H 1.48493 * 109.47446 * 90.54576 * 22 20 18 24 24 H 1.48501 * 109.46944 * 210.54685 * 22 20 18 25 25 H 1.48502 * 109.47161 * 330.53913 * 22 20 18 26 26 C 1.38298 * 119.95704 * 324.30301 * 13 12 10 27 27 C 1.54387 * 102.25146 * 34.13437 * 5 4 2 28 28 O 1.43233 * 107.59080 * 338.64252 * 27 5 4 29 29 H 1.09006 * 109.47204 * 299.36049 * 1 2 3 30 30 H 1.08992 * 109.47295 * 59.36423 * 1 2 3 31 31 H 1.09009 * 109.47248 * 179.36826 * 1 2 3 32 32 H 1.08996 * 111.12400 * 86.72008 * 4 2 1 33 33 H 1.09003 * 111.12135 * 322.55883 * 4 2 1 34 34 H 0.97001 * 120.00599 * 340.71635 * 7 5 4 35 35 H 0.96995 * 120.00340 * 4.69249 * 12 10 8 36 36 H 1.07999 * 119.79076 * 0.02562 * 14 13 12 37 37 H 1.07998 * 119.82825 * 180.02562 * 15 14 13 38 38 H 1.07998 * 120.04888 * 179.97438 * 16 15 14 39 39 H 0.97001 * 119.99953 * 179.97438 * 21 20 18 40 40 H 1.08001 * 120.16098 * 359.73377 * 26 13 12 41 41 H 1.08999 * 109.83102 * 98.16007 * 27 5 4 42 42 H 1.08998 * 109.82681 * 219.12879 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7743 -1.2297 5 6 3.4699 -1.2033 -0.7178 6 1 4.2000 -0.4073 -0.8645 7 7 3.9090 -2.4377 -1.3731 8 6 5.2150 -2.7703 -1.3780 9 8 6.0274 -2.0470 -0.8399 10 6 5.6628 -4.0286 -2.0466 11 8 4.8504 -4.7518 -2.5851 12 7 6.9689 -4.3609 -2.0518 13 6 7.4008 -5.4854 -2.7602 14 6 8.6371 -5.4702 -3.4030 15 6 9.0745 -6.5788 -4.1080 16 6 8.2921 -7.7095 -4.1811 17 6 7.0410 -7.7398 -3.5370 18 6 6.2319 -8.8973 -3.6082 19 1 5.5439 -9.1253 -2.8076 20 6 6.3228 -9.7474 -4.7160 21 7 5.8739 -10.9738 -4.6380 22 14 7.0850 -9.1311 -6.3062 23 1 8.5431 -9.4124 -6.2979 24 1 6.4539 -9.8234 -7.4584 25 1 6.8639 -7.6676 -6.4265 26 6 6.6007 -6.6117 -2.8225 27 6 3.2112 -1.4412 0.7855 28 8 2.0286 -0.7157 1.1414 29 1 -0.3634 0.5039 0.8957 30 1 -0.3633 0.5236 -0.8842 31 1 -0.3634 -1.0277 -0.0113 32 1 2.1496 -0.1225 -2.0994 33 1 1.4470 -1.6430 -1.4491 34 1 3.2597 -3.0158 -1.8035 35 1 7.6091 -3.8196 -1.5640 36 1 9.2581 -4.5881 -3.3510 37 1 10.0345 -6.5568 -4.6023 38 1 8.6375 -8.5714 -4.7326 39 1 5.9366 -11.5630 -5.4060 40 1 5.6441 -6.6262 -2.3213 41 1 3.0625 -2.5049 0.9713 42 1 4.0575 -1.0777 1.3684 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567840272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:23 Heat of formation + Delta-G solvation = -90.135076 kcal Electronic energy + Delta-G solvation = -25728.899537 eV Core-core repulsion = 21866.812261 eV Total energy + Delta-G solvation = -3862.087276 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.95797 -39.93057 -38.69143 -37.38731 -35.38869 -34.45869 -33.24317 -32.54213 -30.52498 -30.38025 -28.96850 -26.46230 -25.40542 -24.94805 -22.21299 -21.88569 -21.05224 -20.90607 -20.05125 -18.59020 -17.72663 -17.45743 -16.71432 -16.21580 -16.00679 -15.70731 -15.49534 -15.24730 -14.66535 -14.45066 -14.18569 -14.02850 -13.86155 -13.36863 -13.08095 -12.93592 -12.79826 -12.67002 -12.29545 -12.06420 -11.98279 -11.80530 -11.70364 -11.54512 -11.32327 -11.01596 -10.81443 -10.69693 -10.11113 -9.90543 -9.81434 -9.68792 -9.54837 -9.17267 -9.07592 -7.73582 -7.29734 -6.98192 -4.51688 1.33869 2.22247 2.52805 2.59463 3.09635 3.21033 3.27575 3.34933 3.36942 3.68468 3.94118 3.96970 4.33179 4.42806 4.46526 4.52158 4.63259 4.76376 4.91274 5.21266 5.24181 5.28988 5.38377 5.43791 5.48742 5.62162 5.76800 5.93358 5.96472 6.14359 6.30942 6.49487 6.58920 6.61626 6.73958 6.88376 7.07771 7.17954 7.43662 7.54720 7.59848 7.83939 7.85445 7.92446 8.27069 8.35237 8.61038 8.76949 10.03885 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021231 B = 0.002664 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.518238 B =10506.497484 C =11283.476856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.078 3.922 3 H 0.076 0.924 4 C -0.160 4.160 5 C 0.112 3.888 6 H 0.109 0.891 7 N -0.694 5.694 8 C 0.515 3.485 9 O -0.519 6.519 10 C 0.496 3.504 11 O -0.493 6.493 12 N -0.634 5.634 13 C 0.153 3.847 14 C -0.261 4.261 15 C -0.062 4.062 16 C -0.252 4.252 17 C 0.101 3.899 18 C -0.439 4.439 19 H 0.091 0.909 20 C 0.084 3.916 21 N -0.805 5.805 22 Si 0.917 3.083 23 H -0.268 1.268 24 H -0.292 1.292 25 H -0.246 1.246 26 C -0.195 4.195 27 C 0.040 3.960 28 O -0.376 6.376 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.417 0.583 35 H 0.413 0.587 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.286 0.714 40 H 0.119 0.881 41 H 0.077 0.923 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.290 18.877 5.085 20.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.020 3.980 3 H 0.094 0.906 4 C -0.198 4.198 5 C 0.007 3.993 6 H 0.127 0.873 7 N -0.349 5.349 8 C 0.296 3.704 9 O -0.395 6.395 10 C 0.276 3.724 11 O -0.366 6.366 12 N -0.279 5.279 13 C 0.062 3.938 14 C -0.282 4.282 15 C -0.081 4.081 16 C -0.271 4.271 17 C 0.097 3.903 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.136 4.136 21 N -0.428 5.428 22 Si 0.743 3.257 23 H -0.194 1.194 24 H -0.220 1.220 25 H -0.170 1.170 26 C -0.216 4.216 27 C -0.038 4.038 28 O -0.295 6.295 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.255 0.745 35 H 0.249 0.751 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.096 0.904 40 H 0.136 0.864 41 H 0.095 0.905 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.508 18.637 5.224 20.420 hybrid contribution 0.498 0.074 -0.890 1.022 sum -6.010 18.711 4.334 20.125 Atomic orbital electron populations 1.21898 0.93240 1.03152 1.02638 1.22915 0.95332 0.95602 0.84134 0.90646 1.23628 0.94786 1.02016 0.99380 1.22603 0.96980 0.87444 0.92281 0.87328 1.45653 1.08192 1.24406 1.56668 1.20352 0.83082 0.86653 0.80305 1.90752 1.52711 1.52016 1.43974 1.19922 0.84018 0.86292 0.82123 1.90843 1.52211 1.50818 1.42763 1.43098 1.07733 1.27860 1.49242 1.17523 0.95111 0.85314 0.95898 1.20083 0.98121 0.99999 1.10016 1.20379 0.97730 0.92953 0.97008 1.21163 0.96673 0.98917 1.10372 1.17610 0.91085 0.91637 0.89982 1.19480 1.19372 1.02492 1.05323 0.89080 1.26181 0.92657 0.93346 1.01372 1.69698 1.35712 1.05087 1.32322 0.86289 0.78747 0.81390 0.79228 1.19436 1.21982 1.16965 1.21094 1.00535 0.91343 1.08587 1.23577 0.88200 0.97593 0.94424 1.88468 1.42407 1.64958 1.33703 0.91622 0.91026 0.91684 0.88755 0.89099 0.74510 0.75083 0.88376 0.88270 0.87762 0.90352 0.86351 0.90509 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.62 37.16 0.36 -0.55 16 2 C 0.08 0.56 4.08 -25.70 -0.10 0.46 16 3 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.16 -1.06 6.19 -24.48 -0.15 -1.21 16 5 C 0.11 1.00 3.28 -65.99 -0.22 0.78 16 6 H 0.11 1.00 7.71 -51.93 -0.40 0.60 16 7 N -0.69 -7.46 5.13 -52.39 -0.27 -7.73 16 8 C 0.52 7.09 7.88 -11.63 -0.09 7.00 16 9 O -0.52 -7.75 16.22 5.49 0.09 -7.66 16 10 C 0.50 8.36 7.72 -11.63 -0.09 8.27 16 11 O -0.49 -9.68 13.94 5.48 0.08 -9.60 16 12 N -0.63 -10.95 5.32 -10.34 -0.05 -11.01 16 13 C 0.15 3.22 6.28 -83.81 -0.53 2.70 16 14 C -0.26 -5.26 9.97 -39.08 -0.39 -5.65 16 15 C -0.06 -1.31 10.01 -39.69 -0.40 -1.71 16 16 C -0.25 -6.03 7.30 -38.83 -0.28 -6.31 16 17 C 0.10 2.58 5.14 -106.85 -0.55 2.03 16 18 C -0.44 -11.99 9.57 -37.74 -0.36 -12.35 16 19 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 20 C 0.08 2.20 5.41 -17.34 -0.09 2.11 16 21 N -0.80 -21.42 13.93 55.55 0.77 -20.64 16 22 Si 0.92 20.96 24.55 -169.99 -4.17 16.79 16 23 H -0.27 -5.87 6.44 56.52 0.36 -5.51 16 24 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.25 -5.83 7.04 56.52 0.40 -5.44 16 26 C -0.19 -4.68 8.42 -38.67 -0.33 -5.00 16 27 C 0.04 0.39 7.55 37.88 0.29 0.68 16 28 O -0.38 -3.83 11.04 -35.23 -0.39 -4.21 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.58 7.91 -51.93 -0.41 0.17 16 34 H 0.42 4.17 7.98 -40.82 -0.33 3.85 16 35 H 0.41 6.04 8.30 -40.82 -0.34 5.70 16 36 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.10 2.48 4.42 -52.49 -0.23 2.25 16 39 H 0.29 6.87 8.30 -40.82 -0.34 6.53 16 40 H 0.12 2.91 6.26 -52.49 -0.33 2.58 16 41 H 0.08 0.78 8.02 -51.93 -0.42 0.37 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 351.06 15.07 5.29 5.29 Total: -1.00 -30.27 351.06 -7.03 -37.29 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -5.43 Total: 10.24 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -2.94 Total: -8.76 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.45 Total: -39.38 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.22 Total: -21.48 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.17 Total: 16.79 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.27 -7.03 -37.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567840272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.841 kcal (2) G-P(sol) polarization free energy of solvation -30.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds