Wall clock time and date at job start Tue Mar 31 2020 12:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.27436 * 2 1 4 4 C 1.54949 * 110.30899 * 237.80101 * 2 1 3 5 5 C 1.55305 * 100.94175 * 204.63937 * 4 2 1 6 6 H 1.08998 * 111.01775 * 275.86810 * 5 4 2 7 7 N 1.46492 * 110.84589 * 152.32396 * 5 4 2 8 8 C 1.34778 * 120.00026 * 160.71711 * 7 5 4 9 9 O 1.21358 * 119.99910 * 359.97438 * 8 7 5 10 10 C 1.49357 * 120.00337 * 180.02562 * 8 7 5 11 11 O 1.21369 * 119.99770 * 359.97438 * 10 8 7 12 12 N 1.34773 * 119.99917 * 179.97438 * 10 8 7 13 13 C 1.39745 * 119.99526 * 184.68935 * 12 10 8 14 14 C 1.39351 * 119.94783 * 144.28822 * 13 12 10 15 15 C 1.38475 * 120.41813 * 180.02562 * 14 13 12 16 16 C 1.37690 * 120.33079 * 359.97438 * 15 14 13 17 17 C 1.40750 * 119.89917 * 0.02562 * 16 15 14 18 18 C 1.41408 * 120.20948 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99557 * 151.62537 * 18 17 16 20 20 C 1.39928 * 120.00101 * 331.63723 * 18 17 16 21 21 N 1.30832 * 120.00007 * 161.35681 * 20 18 17 22 22 Si 1.86802 * 119.99910 * 341.35403 * 20 18 17 23 23 H 1.48493 * 109.47446 * 90.54576 * 22 20 18 24 24 H 1.48501 * 109.46944 * 210.54685 * 22 20 18 25 25 H 1.48502 * 109.47161 * 330.53913 * 22 20 18 26 26 C 1.38298 * 119.95704 * 324.30301 * 13 12 10 27 27 C 1.54387 * 102.25146 * 34.13437 * 5 4 2 28 28 O 1.43233 * 107.59080 * 338.64252 * 27 5 4 29 29 H 1.09006 * 109.47204 * 299.36049 * 1 2 3 30 30 H 1.08992 * 109.47295 * 59.36423 * 1 2 3 31 31 H 1.09009 * 109.47248 * 179.36826 * 1 2 3 32 32 H 1.08996 * 111.12400 * 86.72008 * 4 2 1 33 33 H 1.09003 * 111.12135 * 322.55883 * 4 2 1 34 34 H 0.97001 * 120.00599 * 340.71635 * 7 5 4 35 35 H 0.96995 * 120.00340 * 4.69249 * 12 10 8 36 36 H 1.07999 * 119.79076 * 0.02562 * 14 13 12 37 37 H 1.07998 * 119.82825 * 180.02562 * 15 14 13 38 38 H 1.07998 * 120.04888 * 179.97438 * 16 15 14 39 39 H 0.97001 * 119.99953 * 179.97438 * 21 20 18 40 40 H 1.08001 * 120.16098 * 359.73377 * 26 13 12 41 41 H 1.08999 * 109.83102 * 98.16007 * 27 5 4 42 42 H 1.08998 * 109.82681 * 219.12879 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7743 -1.2297 5 6 3.4699 -1.2033 -0.7178 6 1 4.2000 -0.4073 -0.8645 7 7 3.9090 -2.4377 -1.3731 8 6 5.2150 -2.7703 -1.3780 9 8 6.0274 -2.0470 -0.8399 10 6 5.6628 -4.0286 -2.0466 11 8 4.8504 -4.7518 -2.5851 12 7 6.9689 -4.3609 -2.0518 13 6 7.4008 -5.4854 -2.7602 14 6 8.6371 -5.4702 -3.4030 15 6 9.0745 -6.5788 -4.1080 16 6 8.2921 -7.7095 -4.1811 17 6 7.0410 -7.7398 -3.5370 18 6 6.2319 -8.8973 -3.6082 19 1 5.5439 -9.1253 -2.8076 20 6 6.3228 -9.7474 -4.7160 21 7 5.8739 -10.9738 -4.6380 22 14 7.0850 -9.1311 -6.3062 23 1 8.5431 -9.4124 -6.2979 24 1 6.4539 -9.8234 -7.4584 25 1 6.8639 -7.6676 -6.4265 26 6 6.6007 -6.6117 -2.8225 27 6 3.2112 -1.4412 0.7855 28 8 2.0286 -0.7157 1.1414 29 1 -0.3634 0.5039 0.8957 30 1 -0.3633 0.5236 -0.8842 31 1 -0.3634 -1.0277 -0.0113 32 1 2.1496 -0.1225 -2.0994 33 1 1.4470 -1.6430 -1.4491 34 1 3.2597 -3.0158 -1.8035 35 1 7.6091 -3.8196 -1.5640 36 1 9.2581 -4.5881 -3.3510 37 1 10.0345 -6.5568 -4.6023 38 1 8.6375 -8.5714 -4.7326 39 1 5.9366 -11.5630 -5.4060 40 1 5.6441 -6.6262 -2.3213 41 1 3.0625 -2.5049 0.9713 42 1 4.0575 -1.0777 1.3684 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567840272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:22 Heat of formation + Delta-G solvation = -112.498014 kcal Electronic energy + Delta-G solvation = -25729.869266 eV Core-core repulsion = 21866.812261 eV Total energy + Delta-G solvation = -3863.057006 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.15634 -40.93337 -39.90257 -38.99918 -36.65331 -35.83152 -35.01418 -33.14155 -32.21509 -31.37239 -30.60120 -27.24300 -27.06934 -26.29051 -23.54913 -22.74569 -22.54288 -22.09931 -21.24790 -20.00459 -19.37172 -18.29456 -17.83895 -17.70939 -17.16621 -17.04589 -16.77644 -16.46417 -16.29490 -15.70397 -15.47912 -15.08052 -14.75791 -14.70130 -14.58988 -14.37274 -13.86762 -13.68260 -13.47838 -13.47643 -13.13590 -12.90320 -12.74075 -12.67855 -12.63652 -12.45836 -12.21606 -11.88654 -11.86591 -11.63852 -11.32159 -10.88072 -10.68060 -10.61944 -10.44919 -9.57211 -9.00884 -8.91847 -6.53482 0.03465 0.75607 0.80164 1.14874 1.26087 1.41822 1.49561 1.99541 2.12468 2.42526 2.58167 2.82087 3.20516 3.33817 3.48532 3.70260 3.82856 3.94302 4.16141 4.31115 4.39881 4.50423 4.55222 4.60438 4.65234 4.73219 4.77301 4.78344 4.87764 4.93599 4.97613 5.04190 5.16018 5.26596 5.30680 5.45058 5.65984 5.76388 5.84381 5.91844 5.96576 6.16978 6.27405 6.33884 6.61767 6.71304 6.77212 6.89150 8.16778 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021231 B = 0.002664 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.518238 B =10506.497484 C =11283.476856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.071 3.929 3 H 0.089 0.911 4 C -0.151 4.151 5 C 0.112 3.888 6 H 0.113 0.887 7 N -0.679 5.679 8 C 0.526 3.474 9 O -0.528 6.528 10 C 0.495 3.505 11 O -0.524 6.524 12 N -0.628 5.628 13 C 0.159 3.841 14 C -0.237 4.237 15 C -0.061 4.061 16 C -0.263 4.263 17 C 0.082 3.918 18 C -0.483 4.483 19 H 0.049 0.951 20 C 0.046 3.954 21 N -0.848 5.848 22 Si 0.972 3.028 23 H -0.247 1.247 24 H -0.278 1.278 25 H -0.259 1.259 26 C -0.218 4.218 27 C 0.041 3.959 28 O -0.396 6.396 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.422 0.578 35 H 0.429 0.571 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.105 0.895 39 H 0.295 0.705 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.686 22.193 3.956 23.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.014 3.986 3 H 0.107 0.893 4 C -0.189 4.189 5 C 0.007 3.993 6 H 0.131 0.869 7 N -0.333 5.333 8 C 0.306 3.694 9 O -0.405 6.405 10 C 0.277 3.723 11 O -0.399 6.399 12 N -0.275 5.275 13 C 0.066 3.934 14 C -0.258 4.258 15 C -0.080 4.080 16 C -0.282 4.282 17 C 0.078 3.922 18 C -0.512 4.512 19 H 0.068 0.932 20 C -0.168 4.168 21 N -0.474 5.474 22 Si 0.795 3.205 23 H -0.172 1.172 24 H -0.205 1.205 25 H -0.183 1.183 26 C -0.239 4.239 27 C -0.037 4.037 28 O -0.316 6.316 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.112 0.888 34 H 0.260 0.740 35 H 0.268 0.732 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.122 0.878 39 H 0.105 0.895 40 H 0.117 0.883 41 H 0.085 0.915 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.916 21.983 4.124 22.900 hybrid contribution -0.001 -0.709 -0.371 0.800 sum -4.917 21.274 3.753 22.155 Atomic orbital electron populations 1.21915 0.92340 1.02982 1.03537 1.23164 0.96102 0.95982 0.83362 0.89336 1.23647 0.92920 1.02452 0.99846 1.22761 0.98437 0.86295 0.91796 0.86933 1.45646 1.07090 1.24910 1.55661 1.19674 0.84027 0.85329 0.80325 1.90759 1.53169 1.51884 1.44648 1.20527 0.83471 0.86959 0.81345 1.90845 1.52985 1.52096 1.43982 1.43011 1.08481 1.26939 1.49093 1.17603 0.95091 0.85334 0.95390 1.20644 0.97338 1.00968 1.06817 1.20867 0.98852 0.91803 0.96444 1.21307 0.96239 1.00319 1.10368 1.17745 0.91876 0.91457 0.91078 1.19429 1.20946 1.05010 1.05828 0.93245 1.26878 0.93085 0.93214 1.03645 1.69726 1.37940 1.06061 1.33631 0.85453 0.79255 0.79909 0.75890 1.17184 1.20467 1.18305 1.21055 1.00757 0.92573 1.09563 1.23503 0.88209 0.97080 0.94918 1.88457 1.42453 1.65312 1.35351 0.91885 0.88966 0.92417 0.86560 0.88775 0.73993 0.73206 0.83974 0.84015 0.87765 0.89451 0.88334 0.91493 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.62 71.98 0.69 -0.82 16 2 C 0.07 0.88 4.08 31.26 0.13 1.01 16 3 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.15 -1.62 6.19 32.05 0.20 -1.43 16 5 C 0.11 1.78 3.28 46.26 0.15 1.93 16 6 H 0.11 1.79 7.71 -2.39 -0.02 1.77 16 7 N -0.68 -13.61 5.13 -438.01 -2.25 -15.85 16 8 C 0.53 13.69 7.88 87.24 0.69 14.38 16 9 O -0.53 -14.62 16.22 -3.27 -0.05 -14.68 16 10 C 0.50 16.25 7.72 87.24 0.67 16.93 16 11 O -0.52 -20.83 13.94 -3.31 -0.05 -20.87 16 12 N -0.63 -20.49 5.32 -304.98 -1.62 -22.11 16 13 C 0.16 6.40 6.28 38.16 0.24 6.64 16 14 C -0.24 -8.53 9.97 22.59 0.23 -8.31 16 15 C -0.06 -2.34 10.01 22.20 0.22 -2.12 16 16 C -0.26 -12.25 7.30 22.75 0.17 -12.08 16 17 C 0.08 4.31 5.14 -21.31 -0.11 4.20 16 18 C -0.48 -28.20 9.57 23.46 0.22 -27.98 16 19 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 20 C 0.05 2.55 5.41 85.25 0.46 3.01 16 21 N -0.85 -47.35 13.93 21.82 0.30 -47.05 16 22 Si 0.97 43.34 24.55 68.60 1.68 45.02 16 23 H -0.25 -10.07 6.44 99.48 0.64 -9.43 16 24 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.26 -11.94 7.04 99.48 0.70 -11.24 16 26 C -0.22 -10.74 8.42 22.86 0.19 -10.54 16 27 C 0.04 0.76 7.55 72.45 0.55 1.31 16 28 O -0.40 -7.64 11.04 -148.98 -1.64 -9.29 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.09 0.54 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.66 8.14 -2.38 -0.02 0.65 16 32 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 0.99 7.91 -2.39 -0.02 0.97 16 34 H 0.42 7.97 7.98 -92.71 -0.74 7.23 16 35 H 0.43 11.25 8.30 -92.71 -0.77 10.48 16 36 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 37 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 38 H 0.10 4.81 4.42 -2.91 -0.01 4.80 16 39 H 0.29 14.70 8.30 -92.71 -0.77 13.93 16 40 H 0.10 5.15 6.26 -2.91 -0.02 5.13 16 41 H 0.07 1.35 8.02 -2.39 -0.02 1.33 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -69.02 351.06 0.57 -68.45 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: -0.50 Total: 30.26 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 4.70 Total: -13.89 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -3.57 Total: -85.01 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -1.74 Total: -44.84 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.68 Total: 45.02 kcal Total: -69.02 0.57 -68.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567840272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.044 kcal (2) G-P(sol) polarization free energy of solvation -69.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds