Wall clock time and date at job start Tue Mar 31 2020 12:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47009 * 2 1 4 4 C 1.50708 * 109.47113 * 119.99731 * 2 1 3 5 5 O 1.21278 * 119.99770 * 83.40006 * 4 2 1 6 6 N 1.34772 * 120.00057 * 263.39957 * 4 2 1 7 7 C 1.46492 * 120.00039 * 184.89417 * 6 4 2 8 8 C 1.53004 * 109.47605 * 175.39809 * 7 6 4 9 9 C 1.50703 * 115.54680 * 295.39530 * 8 7 6 10 10 H 1.07994 * 120.00378 * 92.67125 * 9 8 7 11 11 C 1.37873 * 119.99537 * 272.66939 * 9 8 7 12 12 N 1.31513 * 120.00581 * 8.61247 * 11 9 8 13 13 Si 1.86801 * 120.00139 * 188.61338 * 11 9 8 14 14 H 1.48504 * 109.47095 * 59.99754 * 13 11 9 15 15 H 1.48497 * 109.47669 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46980 * 300.00420 * 13 11 9 17 17 C 1.52997 * 117.50447 * 149.71845 * 8 7 6 18 18 C 1.52997 * 117.49792 * 81.05473 * 8 7 6 19 19 C 1.50700 * 109.47406 * 239.99836 * 2 1 3 20 20 C 1.38254 * 119.99832 * 300.02250 * 19 2 1 21 21 C 1.38213 * 119.99694 * 179.97438 * 20 19 2 22 22 C 1.38257 * 120.00301 * 359.97438 * 21 20 19 23 23 C 1.38214 * 119.99841 * 359.75119 * 22 21 20 24 24 N 1.48019 * 120.00190 * 180.27227 * 23 22 21 25 25 O 1.21797 * 119.99893 * 180.23352 * 24 23 22 26 26 O 1.21799 * 119.99932 * 0.23187 * 24 23 22 27 27 C 1.38214 * 119.99660 * 119.99813 * 19 2 1 28 28 H 1.09008 * 109.47193 * 182.07616 * 1 2 3 29 29 H 1.09005 * 109.47537 * 302.07258 * 1 2 3 30 30 H 1.09004 * 109.47381 * 62.07587 * 1 2 3 31 31 H 0.97012 * 120.00144 * 4.89057 * 6 4 2 32 32 H 1.09000 * 109.47207 * 295.39437 * 7 6 4 33 33 H 1.08992 * 109.47384 * 55.39692 * 7 6 4 34 34 H 0.96993 * 120.00993 * 185.02658 * 12 11 9 35 35 H 1.09000 * 117.49664 * 359.97438 * 17 8 7 36 36 H 1.08997 * 117.50079 * 145.01901 * 17 8 7 37 37 H 1.09004 * 117.50192 * 214.98609 * 18 8 7 38 38 H 1.08998 * 117.50266 * 359.97438 * 18 8 7 39 39 H 1.07999 * 120.00099 * 359.97438 * 20 19 2 40 40 H 1.08004 * 120.00067 * 180.02562 * 21 20 19 41 41 H 1.07999 * 119.99771 * 180.02562 * 22 21 20 42 42 H 1.07994 * 120.00369 * 0.02562 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.1206 -1.9199 1.2389 6 7 2.3834 -0.0016 2.3217 7 6 2.9720 -0.6810 3.4784 8 6 3.3816 0.3566 4.5256 9 6 4.4736 1.3069 4.1063 10 1 4.2205 2.2577 3.6610 11 6 5.7957 0.9625 4.2914 12 7 6.1106 -0.2557 4.6739 13 14 7.1399 2.2263 3.9989 14 1 6.9393 3.3821 4.9095 15 1 8.4648 1.6104 4.2644 16 1 7.0841 2.6911 2.5896 17 6 3.3402 -0.0679 5.9949 18 6 2.2880 0.8997 5.4474 19 6 2.0323 -0.7104 -1.2304 20 6 1.6980 -2.0339 -1.4494 21 6 2.1583 -2.6853 -2.5781 22 6 2.9527 -2.0133 -3.4885 23 6 3.2823 -0.6885 -3.2724 24 7 4.1278 0.0328 -4.2501 25 8 4.4217 1.1990 -4.0575 26 8 4.5296 -0.5399 -5.2471 27 6 2.8269 -0.0387 -2.1402 28 1 -0.3634 -1.0271 0.0372 29 1 -0.3634 0.5457 0.8708 30 1 -0.3634 0.4813 -0.9080 31 1 2.2464 0.9586 2.3412 32 1 2.2399 -1.3634 3.9102 33 1 3.8501 -1.2434 3.1614 34 1 7.0332 -0.4779 4.8746 35 1 3.0207 -1.0864 6.2156 36 1 4.1025 0.3403 6.6584 37 1 2.3585 1.9442 5.7511 38 1 1.2766 0.5181 5.3077 39 1 1.0771 -2.5588 -0.7385 40 1 1.8968 -3.7191 -2.7494 41 1 3.3121 -2.5222 -4.3707 42 1 3.0881 0.9952 -1.9691 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568828990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:52 Heat of formation + Delta-G solvation = -1.001999 kcal Electronic energy + Delta-G solvation = -26182.533786 eV Core-core repulsion = 22324.311610 eV Total energy + Delta-G solvation = -3858.222176 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.22699 -40.36051 -38.82185 -36.84136 -36.60730 -34.38505 -33.48150 -32.05032 -31.97412 -30.14779 -26.80267 -26.55952 -25.48331 -24.43552 -22.83104 -21.99510 -21.27146 -20.04716 -19.52610 -18.73529 -18.57179 -17.57077 -17.00128 -16.66851 -16.31334 -15.49001 -15.32033 -14.91399 -14.67848 -14.57190 -14.08239 -13.84531 -13.55888 -13.06369 -12.94057 -12.63164 -12.40068 -12.26199 -12.00768 -11.73542 -11.62439 -11.59409 -11.33987 -11.18738 -11.18446 -11.13407 -10.93841 -10.60453 -10.36530 -9.81304 -9.68404 -9.62494 -9.22232 -9.05400 -8.54325 -8.42656 -8.21805 -6.16970 -4.25127 -0.21496 0.73834 1.29584 1.34479 2.88279 3.15263 3.23532 3.30160 3.31652 3.65689 4.09739 4.27918 4.30855 4.58410 4.71296 4.75404 4.78622 4.93957 5.06100 5.11638 5.18599 5.25873 5.41219 5.46997 5.55138 5.59525 5.80616 5.91102 5.91984 6.05339 6.12233 6.22442 6.35228 6.40302 6.41810 6.58953 6.74165 6.99079 7.10159 7.31930 7.37979 7.59062 7.73277 8.08460 8.23986 8.63754 8.76309 9.43058 10.91621 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012111 B = 0.003761 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.330603 B = 7443.733765 C = 8919.954131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.074 4.074 3 H 0.104 0.896 4 C 0.512 3.488 5 O -0.552 6.552 6 N -0.696 5.696 7 C 0.162 3.838 8 C 0.027 3.973 9 C -0.502 4.502 10 H 0.060 0.940 11 C 0.076 3.924 12 N -0.873 5.873 13 Si 0.886 3.114 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.147 4.147 18 C -0.210 4.210 19 C -0.067 4.067 20 C -0.029 4.029 21 C -0.122 4.122 22 C -0.057 4.057 23 C -0.050 4.050 24 N 0.032 4.968 25 O -0.161 6.161 26 O -0.168 6.168 27 C -0.047 4.047 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.401 0.599 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.263 0.737 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.880 -1.795 -11.536 16.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.096 4.096 3 H 0.122 0.878 4 C 0.296 3.704 5 O -0.432 6.432 6 N -0.343 5.343 7 C 0.039 3.961 8 C 0.026 3.974 9 C -0.539 4.539 10 H 0.078 0.922 11 C -0.129 4.129 12 N -0.508 5.508 13 Si 0.714 3.286 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.185 4.185 18 C -0.248 4.248 19 C -0.069 4.069 20 C -0.047 4.047 21 C -0.141 4.141 22 C -0.076 4.076 23 C -0.133 4.133 24 N 0.550 4.450 25 O -0.377 6.377 26 O -0.382 6.382 27 C -0.066 4.066 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.235 0.765 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.169 0.831 40 H 0.165 0.835 41 H 0.168 0.832 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.006 -3.152 -11.047 16.616 hybrid contribution 1.219 1.296 -0.212 1.792 sum -10.787 -1.856 -11.259 15.702 Atomic orbital electron populations 1.21747 0.91259 1.03326 1.03100 1.20294 0.98192 1.00392 0.90686 0.87778 1.20116 0.78280 0.87828 0.84172 1.90643 1.55368 1.13978 1.83178 1.45977 1.60914 1.11727 1.15721 1.21067 0.95900 0.94166 0.84933 1.19030 0.94618 0.95878 0.87863 1.20292 0.89233 1.01785 1.42627 0.92215 1.24951 0.98500 0.94754 0.94691 1.70000 1.18971 1.17451 1.44383 0.86757 0.81203 0.81780 0.78904 1.20135 1.21225 1.20099 1.22478 1.00030 0.96571 0.99418 1.23046 0.93449 0.98620 1.09667 1.19427 0.97757 0.94536 0.95137 1.21690 0.94934 0.93253 0.94855 1.21233 0.98059 1.00960 0.93826 1.21063 0.95085 0.91171 1.00292 1.21006 1.03991 0.94405 0.93914 1.43625 0.99362 1.00962 1.01024 1.94550 1.60941 1.00396 1.81863 1.94514 1.56162 1.69490 1.18049 1.20954 0.93636 1.01568 0.90467 0.91529 0.91063 0.91331 0.76508 0.94531 0.90732 0.92750 0.91666 0.89771 0.90256 0.91655 0.83103 0.83526 0.83176 0.82880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.96 37.15 0.33 -0.87 16 2 C -0.07 -0.85 2.90 -92.92 -0.27 -1.12 16 3 H 0.10 1.03 7.85 -51.93 -0.41 0.62 16 4 C 0.51 8.22 6.80 -10.98 -0.07 8.15 16 5 O -0.55 -10.52 14.64 5.56 0.08 -10.44 16 6 N -0.70 -12.08 5.45 -60.30 -0.33 -12.41 16 7 C 0.16 3.43 5.51 -4.04 -0.02 3.41 16 8 C 0.03 0.60 1.39 -155.66 -0.22 0.38 16 9 C -0.50 -12.44 8.69 -34.44 -0.30 -12.73 16 10 H 0.06 1.45 7.83 -52.49 -0.41 1.04 16 11 C 0.08 1.96 5.36 -17.82 -0.10 1.86 16 12 N -0.87 -23.74 12.90 55.43 0.71 -23.03 16 13 Si 0.89 20.30 29.55 -169.99 -5.02 15.28 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 C -0.15 -3.20 9.37 -26.69 -0.25 -3.45 16 18 C -0.21 -4.10 9.96 -26.69 -0.27 -4.36 16 19 C -0.07 -0.79 4.73 -104.62 -0.49 -1.29 16 20 C -0.03 -0.32 8.05 -39.58 -0.32 -0.64 16 21 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 22 C -0.06 -0.60 9.56 -39.58 -0.38 -0.98 16 23 C -0.05 -0.64 6.85 -79.95 -0.55 -1.19 16 24 N 0.03 0.46 4.45 33.96 0.15 0.61 16 25 O -0.16 -2.51 18.45 -29.46 -0.54 -3.05 16 26 O -0.17 -2.48 18.45 -29.46 -0.54 -3.02 16 27 C -0.05 -0.57 9.18 -39.58 -0.36 -0.93 16 28 H 0.07 0.60 7.46 -51.92 -0.39 0.21 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.40 6.24 8.42 -40.81 -0.34 5.90 16 32 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 34 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.08 1.97 8.14 -51.93 -0.42 1.54 16 37 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.15 1.64 6.67 -52.49 -0.35 1.29 16 40 H 0.15 0.95 8.06 -52.48 -0.42 0.52 16 41 H 0.15 1.31 7.61 -52.49 -0.40 0.91 16 42 H 0.15 1.71 7.50 -52.49 -0.39 1.32 16 LS Contribution 367.36 15.07 5.54 5.54 Total: -1.00 -29.87 367.36 -9.25 -39.11 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.63 Total: 6.71 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -3.66 Total: -15.30 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.54 Total: -34.82 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -1.01 Total: -16.51 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.87 -9.25 -39.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568828990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.111 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds