Wall clock time and date at job start Tue Mar 31 2020 12:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47009 * 2 1 4 4 C 1.50708 * 109.47113 * 119.99731 * 2 1 3 5 5 O 1.21278 * 119.99770 * 83.40006 * 4 2 1 6 6 N 1.34772 * 120.00057 * 263.39957 * 4 2 1 7 7 C 1.46492 * 120.00039 * 184.89417 * 6 4 2 8 8 C 1.53004 * 109.47605 * 175.39809 * 7 6 4 9 9 C 1.50703 * 115.54680 * 295.39530 * 8 7 6 10 10 H 1.07994 * 120.00378 * 92.67125 * 9 8 7 11 11 C 1.37873 * 119.99537 * 272.66939 * 9 8 7 12 12 N 1.31513 * 120.00581 * 8.61247 * 11 9 8 13 13 Si 1.86801 * 120.00139 * 188.61338 * 11 9 8 14 14 H 1.48504 * 109.47095 * 59.99754 * 13 11 9 15 15 H 1.48497 * 109.47669 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46980 * 300.00420 * 13 11 9 17 17 C 1.52997 * 117.50447 * 149.71845 * 8 7 6 18 18 C 1.52997 * 117.49792 * 81.05473 * 8 7 6 19 19 C 1.50700 * 109.47406 * 239.99836 * 2 1 3 20 20 C 1.38254 * 119.99832 * 300.02250 * 19 2 1 21 21 C 1.38213 * 119.99694 * 179.97438 * 20 19 2 22 22 C 1.38257 * 120.00301 * 359.97438 * 21 20 19 23 23 C 1.38214 * 119.99841 * 359.75119 * 22 21 20 24 24 N 1.48019 * 120.00190 * 180.27227 * 23 22 21 25 25 O 1.21797 * 119.99893 * 180.23352 * 24 23 22 26 26 O 1.21799 * 119.99932 * 0.23187 * 24 23 22 27 27 C 1.38214 * 119.99660 * 119.99813 * 19 2 1 28 28 H 1.09008 * 109.47193 * 182.07616 * 1 2 3 29 29 H 1.09005 * 109.47537 * 302.07258 * 1 2 3 30 30 H 1.09004 * 109.47381 * 62.07587 * 1 2 3 31 31 H 0.97012 * 120.00144 * 4.89057 * 6 4 2 32 32 H 1.09000 * 109.47207 * 295.39437 * 7 6 4 33 33 H 1.08992 * 109.47384 * 55.39692 * 7 6 4 34 34 H 0.96993 * 120.00993 * 185.02658 * 12 11 9 35 35 H 1.09000 * 117.49664 * 359.97438 * 17 8 7 36 36 H 1.08997 * 117.50079 * 145.01901 * 17 8 7 37 37 H 1.09004 * 117.50192 * 214.98609 * 18 8 7 38 38 H 1.08998 * 117.50266 * 359.97438 * 18 8 7 39 39 H 1.07999 * 120.00099 * 359.97438 * 20 19 2 40 40 H 1.08004 * 120.00067 * 180.02562 * 21 20 19 41 41 H 1.07999 * 119.99771 * 180.02562 * 22 21 20 42 42 H 1.07994 * 120.00369 * 0.02562 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.1206 -1.9199 1.2389 6 7 2.3834 -0.0016 2.3217 7 6 2.9720 -0.6810 3.4784 8 6 3.3816 0.3566 4.5256 9 6 4.4736 1.3069 4.1063 10 1 4.2205 2.2577 3.6610 11 6 5.7957 0.9625 4.2914 12 7 6.1106 -0.2557 4.6739 13 14 7.1399 2.2263 3.9989 14 1 6.9393 3.3821 4.9095 15 1 8.4648 1.6104 4.2644 16 1 7.0841 2.6911 2.5896 17 6 3.3402 -0.0679 5.9949 18 6 2.2880 0.8997 5.4474 19 6 2.0323 -0.7104 -1.2304 20 6 1.6980 -2.0339 -1.4494 21 6 2.1583 -2.6853 -2.5781 22 6 2.9527 -2.0133 -3.4885 23 6 3.2823 -0.6885 -3.2724 24 7 4.1278 0.0328 -4.2501 25 8 4.4217 1.1990 -4.0575 26 8 4.5296 -0.5399 -5.2471 27 6 2.8269 -0.0387 -2.1402 28 1 -0.3634 -1.0271 0.0372 29 1 -0.3634 0.5457 0.8708 30 1 -0.3634 0.4813 -0.9080 31 1 2.2464 0.9586 2.3412 32 1 2.2399 -1.3634 3.9102 33 1 3.8501 -1.2434 3.1614 34 1 7.0332 -0.4779 4.8746 35 1 3.0207 -1.0864 6.2156 36 1 4.1025 0.3403 6.6584 37 1 2.3585 1.9442 5.7511 38 1 1.2766 0.5181 5.3077 39 1 1.0771 -2.5588 -0.7385 40 1 1.8968 -3.7191 -2.7494 41 1 3.3121 -2.5222 -4.3707 42 1 3.0881 0.9952 -1.9691 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568828990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:51 Heat of formation + Delta-G solvation = -16.616421 kcal Electronic energy + Delta-G solvation = -26183.210878 eV Core-core repulsion = 22324.311610 eV Total energy + Delta-G solvation = -3858.899268 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.30042 -41.43578 -39.99408 -38.48077 -37.72762 -35.36338 -34.95400 -33.97462 -32.87240 -31.02481 -28.30472 -27.63251 -27.25954 -25.44882 -23.72635 -23.15296 -22.84923 -21.38789 -21.10040 -19.86914 -19.71116 -18.65818 -18.28334 -17.90596 -17.50980 -16.83507 -16.60927 -16.36742 -16.12471 -15.70650 -15.39408 -14.94266 -14.72961 -14.44091 -14.18545 -13.74332 -13.51692 -13.37176 -13.21726 -13.07983 -13.00059 -12.79405 -12.75774 -12.68736 -12.42417 -12.34975 -12.25915 -12.14488 -12.03341 -11.52293 -10.90370 -10.81529 -10.56120 -10.46256 -10.25871 -9.99911 -9.83150 -8.14157 -6.25160 -1.24633 -0.10906 0.29137 0.34022 1.40735 1.43217 1.48260 1.65390 2.17444 2.40050 2.48134 3.16070 3.19229 3.44090 3.49011 3.68869 3.88008 3.89734 3.93624 4.00462 4.20906 4.26490 4.33698 4.55378 4.60236 4.65074 4.68256 4.71335 4.83468 4.85710 4.98596 5.01011 5.04153 5.10306 5.19207 5.27571 5.27963 5.49052 5.57240 5.61102 5.67450 5.76313 6.34717 6.44709 6.73830 6.83181 7.33512 7.45056 8.93980 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012111 B = 0.003761 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.330603 B = 7443.733765 C = 8919.954131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.064 4.064 3 H 0.121 0.879 4 C 0.509 3.491 5 O -0.584 6.584 6 N -0.696 5.696 7 C 0.180 3.820 8 C 0.004 3.996 9 C -0.502 4.502 10 H 0.064 0.936 11 C 0.028 3.972 12 N -0.906 5.906 13 Si 0.939 3.061 14 H -0.268 1.268 15 H -0.293 1.293 16 H -0.274 1.274 17 C -0.161 4.161 18 C -0.174 4.174 19 C -0.078 4.078 20 C -0.033 4.033 21 C -0.111 4.111 22 C -0.053 4.053 23 C -0.068 4.068 24 N 0.033 4.967 25 O -0.195 6.195 26 O -0.168 6.168 27 C -0.054 4.054 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.411 0.589 32 H 0.039 0.961 33 H 0.027 0.973 34 H 0.258 0.742 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.153 0.847 40 H 0.182 0.818 41 H 0.169 0.831 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.771 -1.438 -12.363 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.085 4.085 3 H 0.139 0.861 4 C 0.296 3.704 5 O -0.465 6.465 6 N -0.345 5.345 7 C 0.056 3.944 8 C 0.004 3.996 9 C -0.540 4.540 10 H 0.082 0.918 11 C -0.173 4.173 12 N -0.543 5.543 13 Si 0.766 3.234 14 H -0.193 1.193 15 H -0.220 1.220 16 H -0.199 1.199 17 C -0.200 4.200 18 C -0.211 4.211 19 C -0.079 4.079 20 C -0.051 4.051 21 C -0.130 4.130 22 C -0.072 4.072 23 C -0.151 4.151 24 N 0.547 4.453 25 O -0.404 6.404 26 O -0.385 6.385 27 C -0.073 4.073 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.247 0.753 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.171 0.829 40 H 0.199 0.801 41 H 0.187 0.813 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.909 -2.710 -11.874 18.488 hybrid contribution 1.745 1.080 0.037 2.053 sum -12.163 -1.630 -11.837 17.050 Atomic orbital electron populations 1.21777 0.88849 1.03696 1.04657 1.20297 0.99995 1.00406 0.87841 0.86113 1.20921 0.77059 0.87597 0.84814 1.90622 1.56459 1.15634 1.83800 1.45876 1.61046 1.12198 1.15363 1.20559 0.94252 0.93734 0.85881 1.19051 0.95857 0.96463 0.88264 1.20653 0.89880 1.02111 1.41330 0.91801 1.25610 1.00575 0.96008 0.95097 1.70121 1.18847 1.18984 1.46393 0.85914 0.78738 0.80015 0.78776 1.19305 1.21954 1.19924 1.22422 1.01003 0.97629 0.98910 1.23029 0.93730 0.98392 1.05914 1.19503 0.98140 0.95065 0.95201 1.21890 0.94785 0.93083 0.95392 1.21601 0.96595 1.02259 0.92503 1.21390 0.94522 0.90270 1.01035 1.21221 1.04673 0.95270 0.93927 1.43912 0.99293 1.00869 1.01196 1.94542 1.62274 1.01216 1.82369 1.94484 1.56194 1.69305 1.18544 1.21032 0.93756 1.01948 0.90571 0.91734 0.90184 0.89149 0.75337 0.94282 0.95445 0.93321 0.91059 0.92053 0.89637 0.88876 0.82920 0.80102 0.81330 0.82597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.96 71.98 0.64 -1.30 16 2 C -0.06 -1.34 2.90 -12.29 -0.04 -1.37 16 3 H 0.12 2.11 7.85 -2.39 -0.02 2.09 16 4 C 0.51 15.82 6.80 87.66 0.60 16.42 16 5 O -0.58 -21.97 14.64 -3.02 -0.04 -22.02 16 6 N -0.70 -23.51 5.45 -463.08 -2.52 -26.03 16 7 C 0.18 7.63 5.51 86.38 0.48 8.11 16 8 C 0.00 0.19 1.39 -52.93 -0.07 0.12 16 9 C -0.50 -24.70 8.69 25.60 0.22 -24.48 16 10 H 0.06 3.02 7.83 -2.91 -0.02 3.00 16 11 C 0.03 1.46 5.36 84.65 0.45 1.91 16 12 N -0.91 -50.55 12.90 21.45 0.28 -50.27 16 13 Si 0.94 41.88 29.55 68.60 2.03 43.91 16 14 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 15 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 17 C -0.16 -6.99 9.37 30.62 0.29 -6.71 16 18 C -0.17 -6.37 9.96 30.62 0.30 -6.06 16 19 C -0.08 -1.70 4.73 -19.87 -0.09 -1.79 16 20 C -0.03 -0.67 8.05 22.27 0.18 -0.49 16 21 C -0.11 -1.78 10.05 22.27 0.22 -1.56 16 22 C -0.05 -1.00 9.56 22.27 0.21 -0.79 16 23 C -0.07 -1.65 6.85 36.38 0.25 -1.40 16 24 N 0.03 0.95 4.45 -46.46 -0.21 0.74 16 25 O -0.19 -6.12 18.45 18.89 0.35 -5.77 16 26 O -0.17 -4.87 18.45 18.89 0.35 -4.52 16 27 C -0.05 -1.25 9.18 22.27 0.20 -1.05 16 28 H 0.06 0.99 7.46 -2.38 -0.02 0.97 16 29 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.41 12.09 8.42 -92.70 -0.78 11.31 16 32 H 0.04 1.61 8.10 -2.39 -0.02 1.59 16 33 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.26 14.02 8.32 -92.71 -0.77 13.25 16 35 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.15 3.02 6.67 -2.91 -0.02 3.00 16 40 H 0.18 1.62 8.06 -2.91 -0.02 1.59 16 41 H 0.17 2.50 7.61 -2.91 -0.02 2.48 16 42 H 0.16 3.40 7.50 -2.91 -0.02 3.38 16 Total: -1.00 -65.67 367.36 4.34 -61.33 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.27 Total: 23.07 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 3.85 Total: -20.44 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -2.45 Total: -75.56 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: 0.65 Total: -32.31 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -65.67 4.34 -61.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568828990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.709 kcal (2) G-P(sol) polarization free energy of solvation -65.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds