Wall clock time and date at job start Tue Mar 31 2020 12:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47628 * 2 1 4 4 C 1.50700 * 109.46678 * 240.00510 * 2 1 3 5 5 O 1.21281 * 119.99947 * 246.32567 * 4 2 1 6 6 N 1.34771 * 120.00468 * 66.32517 * 4 2 1 7 7 C 1.46496 * 120.00575 * 184.47370 * 6 4 2 8 8 C 1.52999 * 109.47434 * 175.21563 * 7 6 4 9 9 C 1.50705 * 115.55434 * 65.23051 * 8 7 6 10 10 H 1.07996 * 119.99881 * 270.84590 * 9 8 7 11 11 C 1.37878 * 119.99760 * 90.83643 * 9 8 7 12 12 N 1.31510 * 119.99656 * 181.70917 * 11 9 8 13 13 Si 1.86802 * 120.00223 * 1.70840 * 11 9 8 14 14 H 1.48501 * 109.46889 * 93.06541 * 13 11 9 15 15 H 1.48496 * 109.47269 * 213.06872 * 13 11 9 16 16 H 1.48498 * 109.46910 * 333.06811 * 13 11 9 17 17 C 1.52999 * 117.49939 * 279.56152 * 8 7 6 18 18 C 1.52999 * 117.49988 * 210.90611 * 8 7 6 19 19 C 1.50697 * 109.47129 * 120.01118 * 2 1 3 20 20 C 1.38252 * 120.00702 * 59.71930 * 19 2 1 21 21 C 1.38207 * 120.00295 * 179.76859 * 20 19 2 22 22 C 1.38260 * 120.00071 * 0.50743 * 21 20 19 23 23 C 1.38210 * 119.99849 * 359.74637 * 22 21 20 24 24 N 1.48018 * 120.00216 * 179.97438 * 23 22 21 25 25 O 1.21800 * 120.00318 * 180.02562 * 24 23 22 26 26 O 1.21801 * 119.99650 * 0.02562 * 24 23 22 27 27 C 1.38214 * 119.99508 * 239.99577 * 19 2 1 28 28 H 1.08993 * 109.47217 * 54.87611 * 1 2 3 29 29 H 1.09001 * 109.47487 * 174.88264 * 1 2 3 30 30 H 1.09000 * 109.46889 * 294.87991 * 1 2 3 31 31 H 0.97011 * 119.99903 * 4.47530 * 6 4 2 32 32 H 1.09000 * 109.47447 * 295.21409 * 7 6 4 33 33 H 1.08997 * 109.47197 * 55.21449 * 7 6 4 34 34 H 0.97004 * 120.00057 * 180.02562 * 12 11 9 35 35 H 1.09006 * 117.49940 * 359.97438 * 17 8 7 36 36 H 1.08998 * 117.50014 * 145.01501 * 17 8 7 37 37 H 1.09004 * 117.49879 * 214.97962 * 18 8 7 38 38 H 1.08997 * 117.50250 * 359.96983 * 18 8 7 39 39 H 1.07999 * 119.99867 * 0.02562 * 20 19 2 40 40 H 1.08004 * 120.00246 * 180.23689 * 21 20 19 41 41 H 1.08001 * 120.00063 * 179.72737 * 22 21 20 42 42 H 1.07999 * 120.00222 * 0.02562 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 8 2.6320 -1.7590 -1.1231 6 7 1.8150 -0.1803 -2.4505 7 6 2.2159 -0.9174 -3.6514 8 6 1.7527 -0.1564 -4.8953 9 6 2.3990 1.1874 -5.1135 10 1 1.9612 2.0741 -4.6792 11 6 3.5493 1.2848 -5.8673 12 7 4.1320 2.4526 -6.0298 13 14 4.2801 -0.2418 -6.6579 14 1 3.7593 -0.3801 -8.0417 15 1 5.7596 -0.1197 -6.6956 16 1 3.9023 -1.4390 -5.8648 17 6 0.2899 -0.3132 -5.3154 18 6 1.3976 -0.9792 -6.1354 19 6 2.0324 -0.7106 1.2303 20 6 1.6937 -2.0326 1.4519 21 6 2.1583 -2.6856 2.5778 22 6 2.9533 -2.0139 3.4880 23 6 3.2876 -0.6908 3.2692 24 7 4.1382 0.0286 4.2438 25 8 4.4324 1.1947 4.0512 26 8 4.5439 -0.5456 5.2384 27 6 2.8270 -0.0390 2.1401 28 1 -0.3633 0.5912 -0.8405 29 1 -0.3634 -1.0235 -0.0917 30 1 -0.3633 0.4324 0.9323 31 1 1.3931 0.6893 -2.5334 32 1 3.3011 -1.0183 -3.6705 33 1 1.7591 -1.9069 -3.6398 34 1 4.9411 2.5212 -6.5605 35 1 -0.3424 -0.9588 -4.7059 36 1 -0.2048 0.5555 -5.7499 37 1 1.6312 -0.5484 -7.1090 38 1 1.4945 -2.0626 -6.0653 39 1 1.0694 -2.5562 0.7430 40 1 1.8969 -3.7195 2.7490 41 1 3.3128 -2.5230 4.3700 42 1 3.0876 0.9951 1.9695 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568828991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:56 Heat of formation + Delta-G solvation = 3.957382 kcal Electronic energy + Delta-G solvation = -26068.865265 eV Core-core repulsion = 22210.858144 eV Total energy + Delta-G solvation = -3858.007121 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.28712 -40.46063 -38.95701 -37.21128 -36.66741 -34.52441 -33.65148 -32.22042 -32.05968 -30.20837 -26.98491 -26.67014 -25.54024 -24.60179 -22.91833 -22.13863 -21.82514 -20.12678 -19.48491 -18.78154 -18.58737 -17.63048 -17.04326 -16.81050 -16.49735 -15.73853 -15.57008 -15.16662 -14.71519 -14.67285 -14.12795 -13.93077 -13.55700 -13.14706 -12.96230 -12.73989 -12.63499 -12.45842 -12.38043 -12.17082 -11.79404 -11.68117 -11.39701 -11.25922 -11.24583 -11.24139 -11.00229 -10.57543 -10.29415 -9.84460 -9.72702 -9.61984 -9.36204 -9.28785 -8.78193 -8.65999 -8.48908 -6.25042 -4.30843 -0.28029 0.68583 1.23391 1.28057 2.81980 3.01783 3.20357 3.32526 3.35722 3.53367 3.99989 4.20364 4.31049 4.46454 4.63442 4.66044 4.72019 4.75978 4.90167 4.97709 5.04670 5.14052 5.33176 5.41330 5.50370 5.52834 5.56325 5.72837 5.85143 5.90178 5.94137 5.95435 6.05816 6.09642 6.30586 6.32825 6.37112 6.58415 6.84863 6.92145 6.97274 7.52937 7.57335 7.93337 8.30169 8.50319 8.74098 9.37607 10.86041 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017784 B = 0.003046 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.102094 B = 9190.111674 C = 9824.551503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 H 0.112 0.888 4 C 0.511 3.489 5 O -0.551 6.551 6 N -0.696 5.696 7 C 0.158 3.842 8 C -0.015 4.015 9 C -0.495 4.495 10 H 0.079 0.921 11 C 0.080 3.920 12 N -0.892 5.892 13 Si 0.881 3.119 14 H -0.279 1.279 15 H -0.294 1.294 16 H -0.257 1.257 17 C -0.179 4.179 18 C -0.193 4.193 19 C -0.059 4.059 20 C -0.028 4.028 21 C -0.120 4.120 22 C -0.058 4.058 23 C -0.049 4.049 24 N 0.031 4.969 25 O -0.161 6.161 26 O -0.167 6.167 27 C -0.048 4.048 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.406 0.594 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.267 0.733 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.873 -8.043 14.928 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.098 4.098 3 H 0.130 0.870 4 C 0.295 3.705 5 O -0.430 6.430 6 N -0.345 5.345 7 C 0.034 3.966 8 C -0.016 4.016 9 C -0.532 4.532 10 H 0.097 0.903 11 C -0.123 4.123 12 N -0.529 5.529 13 Si 0.709 3.291 14 H -0.205 1.205 15 H -0.221 1.221 16 H -0.181 1.181 17 C -0.216 4.216 18 C -0.230 4.230 19 C -0.060 4.060 20 C -0.046 4.046 21 C -0.139 4.139 22 C -0.077 4.077 23 C -0.131 4.131 24 N 0.550 4.450 25 O -0.377 6.377 26 O -0.382 6.382 27 C -0.067 4.067 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.242 0.758 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.160 0.840 40 H 0.164 0.836 41 H 0.168 0.832 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.696 -9.033 14.420 19.109 hybrid contribution 0.700 -0.088 -0.462 0.843 sum -7.996 -9.121 13.959 18.492 Atomic orbital electron populations 1.21793 0.91245 1.03239 1.03500 1.20349 0.98235 1.00846 0.90322 0.87033 1.20178 0.79971 0.85751 0.84552 1.90684 1.41690 1.24007 1.86644 1.45837 1.60698 1.22909 1.05027 1.21133 0.99577 0.92644 0.83225 1.19616 0.94443 0.96624 0.90902 1.20171 1.09375 0.90182 1.33492 0.90320 1.24991 0.96085 0.95817 0.95427 1.69877 1.19673 1.23856 1.39445 0.86836 0.77735 0.84435 0.80140 1.20519 1.22125 1.18127 1.22882 0.92248 1.02128 1.04354 1.22935 1.05562 0.97294 0.97251 1.19366 0.97299 0.94407 0.94914 1.21477 0.94919 0.93268 0.94974 1.21185 0.98003 1.00872 0.93820 1.21043 0.95163 0.91218 1.00244 1.21006 1.03747 0.94416 0.93971 1.43632 0.99428 1.00957 1.01004 1.94552 1.61101 1.00367 1.81693 1.94517 1.56120 1.69362 1.18172 1.20930 0.93717 1.01518 0.90571 0.90608 0.91793 0.91217 0.75841 0.91906 0.93545 0.92364 0.90951 0.89344 0.89187 0.90661 0.84048 0.83570 0.83160 0.82897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.89 37.16 0.33 -0.80 16 2 C -0.08 -0.81 2.90 -92.92 -0.27 -1.08 16 3 H 0.11 1.06 7.88 -51.93 -0.41 0.65 16 4 C 0.51 7.70 6.99 -10.99 -0.08 7.62 16 5 O -0.55 -10.07 14.92 5.56 0.08 -9.99 16 6 N -0.70 -11.28 5.46 -60.30 -0.33 -11.61 16 7 C 0.16 3.03 5.24 -4.04 -0.02 3.01 16 8 C -0.01 -0.30 0.86 -155.66 -0.13 -0.43 16 9 C -0.50 -12.37 9.22 -34.44 -0.32 -12.68 16 10 H 0.08 2.11 8.06 -52.49 -0.42 1.69 16 11 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 12 N -0.89 -25.68 13.96 55.43 0.77 -24.91 16 13 Si 0.88 20.76 24.74 -169.99 -4.21 16.55 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.26 -5.77 6.01 56.52 0.34 -5.43 16 17 C -0.18 -3.17 9.96 -26.70 -0.27 -3.43 16 18 C -0.19 -3.74 7.19 -26.70 -0.19 -3.93 16 19 C -0.06 -0.64 4.46 -104.63 -0.47 -1.10 16 20 C -0.03 -0.28 7.92 -39.59 -0.31 -0.59 16 21 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 22 C -0.06 -0.55 9.56 -39.58 -0.38 -0.93 16 23 C -0.05 -0.57 6.85 -79.95 -0.55 -1.12 16 24 N 0.03 0.43 4.45 33.96 0.15 0.58 16 25 O -0.16 -2.36 18.45 -29.46 -0.54 -2.91 16 26 O -0.17 -2.34 18.45 -29.46 -0.54 -2.88 16 27 C -0.05 -0.54 9.18 -39.58 -0.36 -0.91 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.50 7.56 -51.93 -0.39 0.11 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.41 6.08 8.34 -40.82 -0.34 5.74 16 32 H 0.06 1.37 7.59 -51.93 -0.39 0.98 16 33 H 0.05 0.85 8.09 -51.93 -0.42 0.43 16 34 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.09 1.85 6.66 -51.93 -0.35 1.51 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.14 1.31 7.44 -52.49 -0.39 0.92 16 40 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.15 1.19 7.61 -52.49 -0.40 0.79 16 42 H 0.15 1.58 7.50 -52.49 -0.39 1.19 16 LS Contribution 359.18 15.07 5.41 5.41 Total: -1.00 -31.04 359.18 -8.35 -39.39 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.64 Total: 6.10 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -3.51 Total: -15.74 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.60 Total: -35.94 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -1.00 Total: -15.78 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.21 Total: 16.55 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.04 -8.35 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568828991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.347 kcal (2) G-P(sol) polarization free energy of solvation -31.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds