Wall clock time and date at job start Tue Mar 31 2020 12:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47628 * 2 1 4 4 C 1.50700 * 109.46678 * 240.00510 * 2 1 3 5 5 O 1.21281 * 119.99947 * 246.32567 * 4 2 1 6 6 N 1.34771 * 120.00468 * 66.32517 * 4 2 1 7 7 C 1.46496 * 120.00575 * 184.47370 * 6 4 2 8 8 C 1.52999 * 109.47434 * 175.21563 * 7 6 4 9 9 C 1.50705 * 115.55434 * 65.23051 * 8 7 6 10 10 H 1.07996 * 119.99881 * 270.84590 * 9 8 7 11 11 C 1.37878 * 119.99760 * 90.83643 * 9 8 7 12 12 N 1.31510 * 119.99656 * 181.70917 * 11 9 8 13 13 Si 1.86802 * 120.00223 * 1.70840 * 11 9 8 14 14 H 1.48501 * 109.46889 * 93.06541 * 13 11 9 15 15 H 1.48496 * 109.47269 * 213.06872 * 13 11 9 16 16 H 1.48498 * 109.46910 * 333.06811 * 13 11 9 17 17 C 1.52999 * 117.49939 * 279.56152 * 8 7 6 18 18 C 1.52999 * 117.49988 * 210.90611 * 8 7 6 19 19 C 1.50697 * 109.47129 * 120.01118 * 2 1 3 20 20 C 1.38252 * 120.00702 * 59.71930 * 19 2 1 21 21 C 1.38207 * 120.00295 * 179.76859 * 20 19 2 22 22 C 1.38260 * 120.00071 * 0.50743 * 21 20 19 23 23 C 1.38210 * 119.99849 * 359.74637 * 22 21 20 24 24 N 1.48018 * 120.00216 * 179.97438 * 23 22 21 25 25 O 1.21800 * 120.00318 * 180.02562 * 24 23 22 26 26 O 1.21801 * 119.99650 * 0.02562 * 24 23 22 27 27 C 1.38214 * 119.99508 * 239.99577 * 19 2 1 28 28 H 1.08993 * 109.47217 * 54.87611 * 1 2 3 29 29 H 1.09001 * 109.47487 * 174.88264 * 1 2 3 30 30 H 1.09000 * 109.46889 * 294.87991 * 1 2 3 31 31 H 0.97011 * 119.99903 * 4.47530 * 6 4 2 32 32 H 1.09000 * 109.47447 * 295.21409 * 7 6 4 33 33 H 1.08997 * 109.47197 * 55.21449 * 7 6 4 34 34 H 0.97004 * 120.00057 * 180.02562 * 12 11 9 35 35 H 1.09006 * 117.49940 * 359.97438 * 17 8 7 36 36 H 1.08998 * 117.50014 * 145.01501 * 17 8 7 37 37 H 1.09004 * 117.49879 * 214.97962 * 18 8 7 38 38 H 1.08997 * 117.50250 * 359.96983 * 18 8 7 39 39 H 1.07999 * 119.99867 * 0.02562 * 20 19 2 40 40 H 1.08004 * 120.00246 * 180.23689 * 21 20 19 41 41 H 1.08001 * 120.00063 * 179.72737 * 22 21 20 42 42 H 1.07999 * 120.00222 * 0.02562 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 8 2.6320 -1.7590 -1.1231 6 7 1.8150 -0.1803 -2.4505 7 6 2.2159 -0.9174 -3.6514 8 6 1.7527 -0.1564 -4.8953 9 6 2.3990 1.1874 -5.1135 10 1 1.9612 2.0741 -4.6792 11 6 3.5493 1.2848 -5.8673 12 7 4.1320 2.4526 -6.0298 13 14 4.2801 -0.2418 -6.6579 14 1 3.7593 -0.3801 -8.0417 15 1 5.7596 -0.1197 -6.6956 16 1 3.9023 -1.4390 -5.8648 17 6 0.2899 -0.3132 -5.3154 18 6 1.3976 -0.9792 -6.1354 19 6 2.0324 -0.7106 1.2303 20 6 1.6937 -2.0326 1.4519 21 6 2.1583 -2.6856 2.5778 22 6 2.9533 -2.0139 3.4880 23 6 3.2876 -0.6908 3.2692 24 7 4.1382 0.0286 4.2438 25 8 4.4324 1.1947 4.0512 26 8 4.5439 -0.5456 5.2384 27 6 2.8270 -0.0390 2.1401 28 1 -0.3633 0.5912 -0.8405 29 1 -0.3634 -1.0235 -0.0917 30 1 -0.3633 0.4324 0.9323 31 1 1.3931 0.6893 -2.5334 32 1 3.3011 -1.0183 -3.6705 33 1 1.7591 -1.9069 -3.6398 34 1 4.9411 2.5212 -6.5605 35 1 -0.3424 -0.9588 -4.7059 36 1 -0.2048 0.5555 -5.7499 37 1 1.6312 -0.5484 -7.1090 38 1 1.4945 -2.0626 -6.0653 39 1 1.0694 -2.5562 0.7430 40 1 1.8969 -3.7195 2.7490 41 1 3.3128 -2.5230 4.3700 42 1 3.0876 0.9951 1.9695 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568828991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:55 Heat of formation + Delta-G solvation = -14.320985 kcal Electronic energy + Delta-G solvation = -26069.657874 eV Core-core repulsion = 22210.858144 eV Total energy + Delta-G solvation = -3858.799730 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.29191 -41.46520 -40.04216 -38.71826 -37.72077 -35.44991 -34.97898 -34.21071 -32.86734 -31.02811 -28.46702 -27.64177 -27.23262 -25.53835 -23.72981 -23.43913 -23.01342 -21.32533 -21.00543 -19.83804 -19.68136 -18.65038 -18.43969 -17.94081 -17.55468 -17.04915 -16.79012 -16.58054 -15.93643 -15.62496 -15.41861 -14.85708 -14.70965 -14.68327 -14.31888 -14.09086 -13.81909 -13.42660 -13.20675 -13.19455 -13.10654 -12.79315 -12.75059 -12.63188 -12.34607 -12.24825 -12.19515 -12.11067 -11.97185 -11.53949 -11.00288 -10.92780 -10.65586 -10.53381 -10.36118 -10.16078 -9.90508 -8.31269 -6.37696 -1.23963 -0.07909 0.30567 0.35032 1.31710 1.39098 1.48186 1.64537 2.11530 2.34732 2.45185 3.04732 3.16479 3.24934 3.46040 3.64222 3.88238 3.89908 3.95994 3.98962 4.04394 4.17364 4.34457 4.37220 4.41623 4.53306 4.60238 4.69675 4.82286 4.85351 4.86256 4.87109 5.00278 5.10322 5.10489 5.20368 5.28454 5.30355 5.49159 5.49936 5.55930 5.69419 6.26876 6.44937 6.66602 6.73534 7.27436 7.33605 8.83131 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017784 B = 0.003046 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.102094 B = 9190.111674 C = 9824.551503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 H 0.121 0.879 4 C 0.511 3.489 5 O -0.583 6.583 6 N -0.698 5.698 7 C 0.168 3.832 8 C -0.038 4.038 9 C -0.479 4.479 10 H 0.048 0.952 11 C 0.024 3.976 12 N -0.944 5.944 13 Si 0.930 3.070 14 H -0.270 1.270 15 H -0.308 1.308 16 H -0.237 1.237 17 C -0.149 4.149 18 C -0.197 4.197 19 C -0.069 4.069 20 C -0.030 4.030 21 C -0.109 4.109 22 C -0.054 4.054 23 C -0.067 4.067 24 N 0.032 4.968 25 O -0.197 6.197 26 O -0.167 6.167 27 C -0.057 4.057 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.412 0.588 32 H 0.030 0.970 33 H 0.063 0.937 34 H 0.263 0.737 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.151 0.849 40 H 0.183 0.817 41 H 0.169 0.831 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.073 -10.765 15.645 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.089 4.089 3 H 0.138 0.862 4 C 0.298 3.702 5 O -0.464 6.464 6 N -0.347 5.347 7 C 0.043 3.957 8 C -0.039 4.039 9 C -0.517 4.517 10 H 0.067 0.933 11 C -0.174 4.174 12 N -0.584 5.584 13 Si 0.756 3.244 14 H -0.196 1.196 15 H -0.236 1.236 16 H -0.160 1.160 17 C -0.186 4.186 18 C -0.235 4.235 19 C -0.070 4.070 20 C -0.048 4.048 21 C -0.127 4.127 22 C -0.073 4.073 23 C -0.150 4.150 24 N 0.547 4.453 25 O -0.406 6.406 26 O -0.385 6.385 27 C -0.077 4.077 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.248 0.752 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.169 0.831 40 H 0.200 0.800 41 H 0.186 0.814 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.924 -11.707 15.136 22.034 hybrid contribution 1.299 0.715 -0.635 1.613 sum -9.625 -10.992 14.501 20.585 Atomic orbital electron populations 1.21818 0.88839 1.03921 1.04735 1.20340 1.00075 1.00546 0.87939 0.86155 1.20865 0.78870 0.85337 0.85116 1.90662 1.42975 1.25579 1.87139 1.45818 1.60961 1.23090 1.04852 1.20810 0.97666 0.93492 0.83686 1.19452 0.96974 0.95040 0.92441 1.20401 1.08474 0.91597 1.31229 0.93347 1.25734 0.97027 0.97962 0.96669 1.70014 1.20655 1.26051 1.41660 0.86037 0.76116 0.82269 0.79960 1.19599 1.23583 1.16009 1.22905 0.90820 1.01989 1.02854 1.23011 1.06159 0.98467 0.95860 1.19429 0.97675 0.95070 0.94829 1.21739 0.94670 0.92883 0.95537 1.21577 0.96451 1.02205 0.92480 1.21381 0.94658 0.90242 1.01036 1.21215 1.04478 0.95314 0.93956 1.43940 0.99365 1.00857 1.01180 1.94546 1.62562 1.01249 1.82258 1.94483 1.56130 1.69156 1.18684 1.20996 0.94036 1.01798 0.90822 0.90116 0.91244 0.89410 0.75222 0.95175 0.91920 0.92757 0.87525 0.89678 0.90664 0.88289 0.83106 0.79999 0.81382 0.82973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.89 71.98 0.64 -1.15 16 2 C -0.07 -1.32 2.90 -12.29 -0.04 -1.36 16 3 H 0.12 2.13 7.88 -2.39 -0.02 2.11 16 4 C 0.51 14.58 6.99 87.66 0.61 15.19 16 5 O -0.58 -20.37 14.92 -3.03 -0.05 -20.42 16 6 N -0.70 -21.62 5.46 -463.08 -2.53 -24.14 16 7 C 0.17 6.17 5.24 86.38 0.45 6.62 16 8 C -0.04 -1.49 0.86 -52.93 -0.05 -1.54 16 9 C -0.48 -24.14 9.22 25.60 0.24 -23.91 16 10 H 0.05 2.67 8.06 -2.91 -0.02 2.64 16 11 C 0.02 1.32 5.47 84.66 0.46 1.78 16 12 N -0.94 -56.29 13.96 21.45 0.30 -55.99 16 13 Si 0.93 42.94 24.74 68.60 1.70 44.64 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.31 -14.79 7.11 99.48 0.71 -14.08 16 16 H -0.24 -10.06 6.01 99.48 0.60 -9.46 16 17 C -0.15 -4.77 9.96 30.62 0.30 -4.46 16 18 C -0.20 -7.08 7.19 30.61 0.22 -6.86 16 19 C -0.07 -1.37 4.46 -19.87 -0.09 -1.46 16 20 C -0.03 -0.51 7.92 22.27 0.18 -0.34 16 21 C -0.11 -1.47 10.05 22.27 0.22 -1.25 16 22 C -0.05 -0.91 9.56 22.27 0.21 -0.70 16 23 C -0.07 -1.51 6.85 36.37 0.25 -1.26 16 24 N 0.03 0.89 4.45 -46.46 -0.21 0.68 16 25 O -0.20 -5.99 18.45 18.89 0.35 -5.64 16 26 O -0.17 -4.61 18.45 18.89 0.35 -4.26 16 27 C -0.06 -1.25 9.18 22.27 0.20 -1.04 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 0.86 7.56 -2.39 -0.02 0.84 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.41 11.83 8.34 -92.70 -0.77 11.05 16 32 H 0.03 1.29 7.59 -2.39 -0.02 1.28 16 33 H 0.06 2.11 8.09 -2.39 -0.02 2.09 16 34 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 35 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 36 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.07 2.94 6.66 -2.38 -0.02 2.92 16 38 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 39 H 0.15 2.29 7.44 -2.91 -0.02 2.27 16 40 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16 41 H 0.17 2.19 7.61 -2.91 -0.02 2.16 16 42 H 0.15 3.20 7.50 -2.91 -0.02 3.18 16 Total: -1.00 -69.23 359.18 3.91 -65.32 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.17 Total: 21.53 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 3.83 Total: -21.73 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -2.43 Total: -79.45 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: 0.65 Total: -30.32 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.70 Total: 44.64 kcal Total: -69.23 3.91 -65.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568828991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.003 kcal (2) G-P(sol) polarization free energy of solvation -69.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds