Wall clock time and date at job start Tue Mar 31 2020 13:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46971 * 2 1 4 4 C 1.42896 * 114.00231 * 179.97438 * 3 2 1 5 5 H 1.08999 * 115.54892 * 355.67827 * 4 3 2 6 6 C 1.53078 * 117.51245 * 141.39270 * 4 3 2 7 7 C 1.52996 * 117.50159 * 210.00360 * 4 3 2 8 8 H 1.09000 * 117.50074 * 144.99845 * 7 4 3 9 9 N 1.46501 * 117.50031 * 0.02562 * 7 4 3 10 10 C 1.34774 * 120.00201 * 155.08680 * 9 7 4 11 11 O 1.21354 * 120.00169 * 359.72592 * 10 9 7 12 12 C 1.49360 * 120.00026 * 179.72579 * 10 9 7 13 13 O 1.21376 * 119.99812 * 359.97438 * 12 10 9 14 14 N 1.34774 * 120.00026 * 180.02562 * 12 10 9 15 15 C 1.39737 * 120.00126 * 174.89153 * 14 12 10 16 16 C 1.39339 * 119.95446 * 325.51659 * 15 14 12 17 17 C 1.38466 * 120.42791 * 179.71905 * 16 15 14 18 18 C 1.37703 * 120.32570 * 0.55172 * 17 16 15 19 19 C 1.40747 * 119.88991 * 359.72518 * 18 17 16 20 20 C 1.41411 * 120.20242 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00030 * 205.16892 * 20 19 18 22 22 C 1.39931 * 120.00326 * 25.16315 * 20 19 18 23 23 N 1.30830 * 119.99734 * 16.80313 * 22 20 19 24 24 Si 1.86801 * 120.00355 * 196.79427 * 22 20 19 25 25 H 1.48503 * 109.46911 * 90.00662 * 24 22 20 26 26 H 1.48502 * 109.47315 * 210.00345 * 24 22 20 27 27 H 1.48497 * 109.47323 * 330.00332 * 24 22 20 28 28 C 1.38298 * 119.95216 * 145.78540 * 15 14 12 29 29 H 1.08998 * 109.46766 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47203 * 299.99249 * 1 2 3 31 31 H 1.08999 * 109.47054 * 60.00227 * 1 2 3 32 32 H 1.08998 * 109.47203 * 240.00751 * 2 1 3 33 33 H 1.08988 * 109.47257 * 120.00260 * 2 1 3 34 34 H 1.08997 * 117.51159 * 0.02562 * 6 4 3 35 35 H 1.08997 * 117.49233 * 214.96427 * 6 4 3 36 36 H 0.97005 * 119.99563 * 334.81204 * 9 7 4 37 37 H 0.97000 * 119.99763 * 354.89918 * 14 12 10 38 38 H 1.08002 * 119.79024 * 359.97438 * 16 15 14 39 39 H 1.07996 * 119.84377 * 180.25291 * 17 16 15 40 40 H 1.08002 * 120.05246 * 179.70075 * 18 17 16 41 41 H 0.97000 * 120.00320 * 179.97438 * 23 22 20 42 42 H 1.07998 * 120.16606 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9769 0.5198 0.0751 6 6 4.0522 2.5736 -0.8465 7 6 4.0419 2.6877 0.6793 8 1 4.9901 2.5549 1.2003 9 7 3.1219 3.6571 1.2794 10 6 3.5409 4.4508 2.2848 11 8 4.6788 4.3590 2.6965 12 6 2.6048 5.4434 2.8925 13 8 1.4668 5.5355 2.4804 14 7 3.0239 6.2374 3.8976 15 6 2.1843 7.2378 4.3943 16 6 1.3198 7.9113 3.5337 17 6 0.4794 8.9003 4.0163 18 6 0.4971 9.2372 5.3514 19 6 1.3691 8.5696 6.2318 20 6 1.3922 8.9099 7.6041 21 1 2.2810 8.7287 8.1905 22 6 0.2638 9.4814 8.2025 23 7 -0.9003 9.4044 7.6104 24 14 0.4194 10.3542 9.8467 25 1 0.7187 11.7907 9.6182 26 1 -0.8559 10.2276 10.5970 27 1 1.5189 9.7382 10.6321 28 6 2.2165 7.5620 5.7383 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.3745 3.2201 -1.4038 35 1 5.0071 2.3653 -1.3291 36 1 2.2124 3.7305 0.9503 37 1 3.9085 6.1144 4.2762 38 1 1.3021 7.6575 2.4841 39 1 -0.1897 9.4134 3.3416 40 1 -0.1568 10.0126 5.7222 41 1 -1.6827 9.8002 8.0253 42 1 2.8895 7.0441 6.4056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577469873.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:25 Heat of formation + Delta-G solvation = -62.615053 kcal Electronic energy + Delta-G solvation = -25236.826738 eV Core-core repulsion = 21375.932820 eV Total energy + Delta-G solvation = -3860.893918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.64886 -39.32696 -38.37391 -37.14907 -36.18311 -34.62566 -33.17316 -32.71455 -31.02600 -29.87600 -28.56065 -25.40194 -25.06076 -23.25687 -22.55341 -22.06251 -21.10810 -20.86144 -19.88287 -18.42016 -17.77440 -17.45309 -16.32137 -15.91391 -15.78926 -15.68560 -15.47888 -15.02364 -14.76784 -14.54403 -14.00171 -13.88382 -13.46814 -13.05661 -12.96452 -12.90819 -12.75438 -12.43266 -12.27457 -11.77147 -11.73166 -11.52736 -11.46120 -11.27190 -11.24039 -11.19048 -10.92286 -10.47015 -10.16351 -9.72049 -9.67159 -9.42794 -9.22442 -8.99104 -8.95243 -7.50757 -7.00898 -6.74865 -4.38603 1.47355 2.37826 2.77903 2.84340 3.06469 3.07772 3.11201 3.19996 3.39691 3.65849 3.81344 3.93805 4.39566 4.46305 4.61407 4.62505 4.68740 4.72681 4.94434 5.00324 5.05221 5.35001 5.42223 5.56476 5.57811 5.64494 5.82849 6.13525 6.23613 6.45694 6.61219 6.81458 6.85095 6.89133 7.00548 7.13275 7.21890 7.49490 7.55648 7.75963 7.94506 7.99744 8.07194 8.23210 8.39426 8.61824 8.86766 8.92460 10.19028 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021933 B = 0.002331 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.297429 B =12008.137042 C =12448.714625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.060 3.940 3 O -0.354 6.354 4 C 0.014 3.986 5 H 0.119 0.881 6 C -0.196 4.196 7 C 0.079 3.921 8 H 0.146 0.854 9 N -0.668 5.668 10 C 0.516 3.484 11 O -0.524 6.524 12 C 0.498 3.502 13 O -0.501 6.501 14 N -0.631 5.631 15 C 0.146 3.854 16 C -0.225 4.225 17 C -0.095 4.095 18 C -0.163 4.163 19 C 0.121 3.879 20 C -0.463 4.463 21 H 0.078 0.922 22 C 0.076 3.924 23 N -0.793 5.793 24 Si 0.910 3.090 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.262 1.262 28 C -0.237 4.237 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.420 0.580 37 H 0.412 0.588 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.281 0.719 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.212 -14.979 -13.501 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.016 4.016 3 O -0.272 6.272 4 C -0.046 4.046 5 H 0.137 0.863 6 C -0.235 4.235 7 C -0.028 4.028 8 H 0.163 0.837 9 N -0.320 5.320 10 C 0.297 3.703 11 O -0.399 6.399 12 C 0.279 3.721 13 O -0.376 6.376 14 N -0.276 5.276 15 C 0.055 3.945 16 C -0.246 4.246 17 C -0.114 4.114 18 C -0.183 4.183 19 C 0.118 3.882 20 C -0.493 4.493 21 H 0.097 0.903 22 C -0.142 4.142 23 N -0.419 5.419 24 Si 0.734 3.266 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.186 1.186 28 C -0.259 4.259 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.258 0.742 37 H 0.248 0.752 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.138 0.862 41 H 0.092 0.908 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.827 -14.775 -13.466 20.822 hybrid contribution 0.086 0.022 0.691 0.697 sum 5.913 -14.752 -12.775 20.391 Atomic orbital electron populations 1.21770 0.93352 1.02455 1.03588 1.22563 0.95834 0.83012 1.00222 1.87838 1.18109 1.27222 1.94050 1.23295 0.82882 0.94478 1.03897 0.86307 1.24042 1.03208 1.02049 0.94174 1.22232 0.95908 0.91392 0.93226 0.83679 1.44924 1.16341 1.35970 1.34753 1.20332 0.87742 0.81752 0.80434 1.90729 1.19333 1.68584 1.61299 1.19872 0.87571 0.82449 0.82223 1.90797 1.18345 1.67902 1.60561 1.43156 1.19033 1.31568 1.33869 1.17436 0.94685 0.89594 0.92825 1.20288 1.03803 1.02652 0.97829 1.20575 0.97861 0.97215 0.95706 1.21416 1.03073 1.02241 0.91581 1.17379 0.89361 0.88175 0.93263 1.19535 0.99345 1.35941 0.94449 0.90339 1.25903 0.94541 0.94109 0.99658 1.69828 0.99505 1.33854 1.38679 0.86288 0.78650 0.80345 0.81277 1.19266 1.20348 1.18645 1.20745 1.08906 1.04424 0.91779 0.90917 0.91440 0.91708 0.93116 0.93012 0.87464 0.87007 0.74202 0.75175 0.88129 0.88835 0.86160 0.90829 0.88367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.44 6.53 37.16 0.24 0.68 16 3 O -0.35 -3.49 10.03 -35.23 -0.35 -3.85 16 4 C 0.01 0.11 6.45 -26.69 -0.17 -0.06 16 5 H 0.12 0.66 7.93 -51.93 -0.41 0.25 16 6 C -0.20 -1.50 10.41 -26.69 -0.28 -1.78 16 7 C 0.08 0.79 6.43 -67.93 -0.44 0.35 16 8 H 0.15 1.41 7.40 -51.93 -0.38 1.03 16 9 N -0.67 -8.62 5.46 -54.27 -0.30 -8.91 16 10 C 0.52 8.06 7.89 -11.63 -0.09 7.96 16 11 O -0.52 -8.71 16.05 5.49 0.09 -8.62 16 12 C 0.50 9.21 7.61 -11.63 -0.09 9.12 16 13 O -0.50 -10.45 14.22 5.47 0.08 -10.37 16 14 N -0.63 -12.13 5.32 -10.34 -0.05 -12.19 16 15 C 0.15 3.35 6.24 -83.82 -0.52 2.83 16 16 C -0.22 -5.33 8.66 -39.09 -0.34 -5.67 16 17 C -0.09 -2.28 10.02 -39.69 -0.40 -2.68 16 18 C -0.16 -4.27 8.69 -38.83 -0.34 -4.60 16 19 C 0.12 3.22 5.57 -106.85 -0.59 2.63 16 20 C -0.46 -12.16 9.05 -37.74 -0.34 -12.50 16 21 H 0.08 1.97 7.90 -52.48 -0.41 1.56 16 22 C 0.08 1.89 5.16 -17.34 -0.09 1.80 16 23 N -0.79 -20.51 10.94 55.55 0.61 -19.90 16 24 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 26 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 27 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 28 C -0.24 -5.78 9.70 -38.67 -0.38 -6.16 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.35 8.14 -51.94 -0.42 -0.08 16 34 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.42 5.48 7.87 -40.82 -0.32 5.16 16 37 H 0.41 6.95 8.30 -40.82 -0.34 6.61 16 38 H 0.10 2.32 6.48 -52.49 -0.34 1.98 16 39 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 40 H 0.12 3.21 6.17 -52.49 -0.32 2.88 16 41 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 42 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -30.54 365.03 -8.37 -38.92 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -5.47 Total: 14.67 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -3.44 Total: -8.78 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.26 Total: -41.00 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.19 Total: -22.84 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.54 -8.37 -38.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577469873.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.698 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds