Wall clock time and date at job start Tue Mar 31 2020 13:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46971 * 2 1 4 4 C 1.42896 * 114.00231 * 179.97438 * 3 2 1 5 5 H 1.08999 * 115.54892 * 355.67827 * 4 3 2 6 6 C 1.53078 * 117.51245 * 141.39270 * 4 3 2 7 7 C 1.52996 * 117.50159 * 210.00360 * 4 3 2 8 8 H 1.09000 * 117.50074 * 144.99845 * 7 4 3 9 9 N 1.46501 * 117.50031 * 0.02562 * 7 4 3 10 10 C 1.34774 * 120.00201 * 155.08680 * 9 7 4 11 11 O 1.21354 * 120.00169 * 359.72592 * 10 9 7 12 12 C 1.49360 * 120.00026 * 179.72579 * 10 9 7 13 13 O 1.21376 * 119.99812 * 359.97438 * 12 10 9 14 14 N 1.34774 * 120.00026 * 180.02562 * 12 10 9 15 15 C 1.39737 * 120.00126 * 174.89153 * 14 12 10 16 16 C 1.39339 * 119.95446 * 325.51659 * 15 14 12 17 17 C 1.38466 * 120.42791 * 179.71905 * 16 15 14 18 18 C 1.37703 * 120.32570 * 0.55172 * 17 16 15 19 19 C 1.40747 * 119.88991 * 359.72518 * 18 17 16 20 20 C 1.41411 * 120.20242 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00030 * 205.16892 * 20 19 18 22 22 C 1.39931 * 120.00326 * 25.16315 * 20 19 18 23 23 N 1.30830 * 119.99734 * 16.80313 * 22 20 19 24 24 Si 1.86801 * 120.00355 * 196.79427 * 22 20 19 25 25 H 1.48503 * 109.46911 * 90.00662 * 24 22 20 26 26 H 1.48502 * 109.47315 * 210.00345 * 24 22 20 27 27 H 1.48497 * 109.47323 * 330.00332 * 24 22 20 28 28 C 1.38298 * 119.95216 * 145.78540 * 15 14 12 29 29 H 1.08998 * 109.46766 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47203 * 299.99249 * 1 2 3 31 31 H 1.08999 * 109.47054 * 60.00227 * 1 2 3 32 32 H 1.08998 * 109.47203 * 240.00751 * 2 1 3 33 33 H 1.08988 * 109.47257 * 120.00260 * 2 1 3 34 34 H 1.08997 * 117.51159 * 0.02562 * 6 4 3 35 35 H 1.08997 * 117.49233 * 214.96427 * 6 4 3 36 36 H 0.97005 * 119.99563 * 334.81204 * 9 7 4 37 37 H 0.97000 * 119.99763 * 354.89918 * 14 12 10 38 38 H 1.08002 * 119.79024 * 359.97438 * 16 15 14 39 39 H 1.07996 * 119.84377 * 180.25291 * 17 16 15 40 40 H 1.08002 * 120.05246 * 179.70075 * 18 17 16 41 41 H 0.97000 * 120.00320 * 179.97438 * 23 22 20 42 42 H 1.07998 * 120.16606 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9769 0.5198 0.0751 6 6 4.0522 2.5736 -0.8465 7 6 4.0419 2.6877 0.6793 8 1 4.9901 2.5549 1.2003 9 7 3.1219 3.6571 1.2794 10 6 3.5409 4.4508 2.2848 11 8 4.6788 4.3590 2.6965 12 6 2.6048 5.4434 2.8925 13 8 1.4668 5.5355 2.4804 14 7 3.0239 6.2374 3.8976 15 6 2.1843 7.2378 4.3943 16 6 1.3198 7.9113 3.5337 17 6 0.4794 8.9003 4.0163 18 6 0.4971 9.2372 5.3514 19 6 1.3691 8.5696 6.2318 20 6 1.3922 8.9099 7.6041 21 1 2.2810 8.7287 8.1905 22 6 0.2638 9.4814 8.2025 23 7 -0.9003 9.4044 7.6104 24 14 0.4194 10.3542 9.8467 25 1 0.7187 11.7907 9.6182 26 1 -0.8559 10.2276 10.5970 27 1 1.5189 9.7382 10.6321 28 6 2.2165 7.5620 5.7383 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.3745 3.2201 -1.4038 35 1 5.0071 2.3653 -1.3291 36 1 2.2124 3.7305 0.9503 37 1 3.9085 6.1144 4.2762 38 1 1.3021 7.6575 2.4841 39 1 -0.1897 9.4134 3.3416 40 1 -0.1568 10.0126 5.7222 41 1 -1.6827 9.8002 8.0253 42 1 2.8895 7.0441 6.4056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577469873.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:24 Heat of formation + Delta-G solvation = -82.848647 kcal Electronic energy + Delta-G solvation = -25237.704132 eV Core-core repulsion = 21375.932820 eV Total energy + Delta-G solvation = -3861.771313 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.02756 -40.47386 -39.46236 -38.87773 -37.03528 -36.29328 -34.94464 -33.77643 -31.81435 -31.62863 -30.35634 -27.26403 -26.51276 -23.81830 -23.46564 -23.09035 -22.87283 -22.16200 -21.39542 -19.87696 -19.34674 -18.47940 -17.61118 -17.39349 -17.09533 -16.77040 -16.52649 -16.44494 -16.36214 -15.81860 -15.39559 -15.09720 -14.78611 -14.68523 -14.18781 -14.11327 -13.65451 -13.60325 -13.35732 -13.07173 -13.02973 -12.98375 -12.84502 -12.73561 -12.52272 -12.18654 -12.12618 -11.92889 -11.84991 -11.51198 -11.19426 -10.99094 -10.68632 -10.40292 -9.81396 -9.45837 -8.87724 -8.62859 -6.37754 0.06388 0.94200 0.97796 1.21037 1.40933 1.53590 1.54398 2.02254 2.21932 2.36970 2.64146 2.73104 2.85402 3.28448 3.67908 3.68291 3.85922 4.07730 4.19690 4.33491 4.38240 4.44672 4.50349 4.59484 4.69381 4.87396 4.88445 4.93357 4.98614 5.02490 5.04247 5.09289 5.20820 5.27113 5.29963 5.63177 5.70011 5.89185 6.04779 6.06610 6.20784 6.23650 6.41252 6.62119 6.66950 6.84457 6.90999 7.00161 8.33447 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021933 B = 0.002331 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.297429 B =12008.137042 C =12448.714625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.055 3.945 3 O -0.381 6.381 4 C 0.024 3.976 5 H 0.150 0.850 6 C -0.179 4.179 7 C 0.047 3.953 8 H 0.148 0.852 9 N -0.656 5.656 10 C 0.525 3.475 11 O -0.535 6.535 12 C 0.499 3.501 13 O -0.526 6.526 14 N -0.629 5.629 15 C 0.155 3.845 16 C -0.234 4.234 17 C -0.094 4.094 18 C -0.189 4.189 19 C 0.095 3.905 20 C -0.494 4.494 21 H 0.081 0.919 22 C 0.034 3.966 23 N -0.825 5.825 24 Si 0.986 3.014 25 H -0.261 1.261 26 H -0.269 1.269 27 H -0.257 1.257 28 C -0.250 4.250 29 H 0.092 0.908 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.140 0.860 36 H 0.419 0.581 37 H 0.424 0.576 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.289 0.711 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.223 -16.414 -14.145 22.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.021 4.021 3 O -0.300 6.300 4 C -0.035 4.035 5 H 0.167 0.833 6 C -0.217 4.217 7 C -0.058 4.058 8 H 0.166 0.834 9 N -0.306 5.306 10 C 0.305 3.695 11 O -0.413 6.413 12 C 0.281 3.719 13 O -0.402 6.402 14 N -0.275 5.275 15 C 0.062 3.938 16 C -0.255 4.255 17 C -0.113 4.113 18 C -0.209 4.209 19 C 0.092 3.908 20 C -0.524 4.524 21 H 0.099 0.901 22 C -0.181 4.181 23 N -0.450 5.450 24 Si 0.807 3.193 25 H -0.186 1.186 26 H -0.194 1.194 27 H -0.181 1.181 28 C -0.271 4.271 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.158 0.842 36 H 0.257 0.743 37 H 0.262 0.738 38 H 0.125 0.875 39 H 0.133 0.867 40 H 0.125 0.875 41 H 0.100 0.900 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.857 -16.255 -14.155 22.619 hybrid contribution -0.255 0.349 0.753 0.868 sum 6.602 -15.906 -13.402 21.822 Atomic orbital electron populations 1.21802 0.93621 1.03424 1.02399 1.22737 0.95716 0.82149 1.01510 1.87811 1.19195 1.28903 1.94094 1.23521 0.82490 0.95127 1.02388 0.83263 1.24104 1.04246 1.01212 0.92175 1.22583 0.95944 0.92389 0.94926 0.83424 1.44935 1.16737 1.35414 1.33516 1.19646 0.86888 0.81756 0.81216 1.90730 1.19352 1.69115 1.62066 1.20442 0.87717 0.82393 0.81363 1.90779 1.19655 1.68677 1.61124 1.43080 1.19128 1.31045 1.34245 1.17455 0.94311 0.89687 0.92343 1.20452 1.04074 1.02733 0.98274 1.20816 0.97956 0.97135 0.95394 1.21374 1.04025 1.03014 0.92490 1.17754 0.90155 0.88962 0.93966 1.19822 1.00171 1.37616 0.94747 0.90112 1.26802 0.93690 0.94069 1.03530 1.69884 1.00350 1.34249 1.40536 0.85144 0.78923 0.78981 0.76295 1.18581 1.19408 1.18099 1.20894 1.09115 1.04430 0.92693 0.88919 0.93281 0.92197 0.91102 0.92324 0.88283 0.84199 0.74335 0.73797 0.87461 0.86709 0.87457 0.90022 0.87230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 10.28 71.98 0.74 -1.28 16 2 C 0.05 0.69 6.53 71.98 0.47 1.16 16 3 O -0.38 -6.85 10.03 -148.98 -1.49 -8.34 16 4 C 0.02 0.32 6.45 30.62 0.20 0.52 16 5 H 0.15 1.08 7.93 -2.39 -0.02 1.06 16 6 C -0.18 -2.25 10.41 30.62 0.32 -1.94 16 7 C 0.05 0.84 6.43 44.99 0.29 1.13 16 8 H 0.15 2.59 7.40 -2.39 -0.02 2.57 16 9 N -0.66 -16.27 5.46 -443.96 -2.42 -18.70 16 10 C 0.52 16.00 7.89 87.24 0.69 16.69 16 11 O -0.54 -17.27 16.05 -3.26 -0.05 -17.32 16 12 C 0.50 18.32 7.61 87.24 0.66 18.98 16 13 O -0.53 -21.96 14.22 -3.33 -0.05 -22.00 16 14 N -0.63 -24.07 5.32 -304.99 -1.62 -25.69 16 15 C 0.15 7.15 6.24 38.16 0.24 7.39 16 16 C -0.23 -11.19 8.66 22.59 0.20 -10.99 16 17 C -0.09 -4.61 10.02 22.20 0.22 -4.39 16 18 C -0.19 -10.18 8.69 22.76 0.20 -9.98 16 19 C 0.09 5.17 5.57 -21.31 -0.12 5.05 16 20 C -0.49 -26.52 9.05 23.46 0.21 -26.30 16 21 H 0.08 4.13 7.90 -2.91 -0.02 4.11 16 22 C 0.03 1.72 5.16 85.25 0.44 2.16 16 23 N -0.82 -43.36 10.94 21.82 0.24 -43.12 16 24 Si 0.99 37.97 29.59 68.60 2.03 40.00 16 25 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 26 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 27 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 28 C -0.25 -12.41 9.70 22.86 0.22 -12.18 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.42 10.69 7.87 -92.70 -0.73 9.96 16 37 H 0.42 14.12 8.30 -92.71 -0.77 13.35 16 38 H 0.11 4.94 6.48 -2.91 -0.02 4.92 16 39 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 40 H 0.11 5.95 6.17 -2.91 -0.02 5.93 16 41 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 42 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -66.67 365.03 1.18 -65.49 By element: Atomic # 1 Polarization: 44.09 SS G_CDS: -0.43 Total: 43.66 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 4.98 Total: -13.98 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -3.81 Total: -87.51 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -1.59 Total: -47.67 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Total: -66.67 1.18 -65.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577469873.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.356 kcal (2) G-P(sol) polarization free energy of solvation -66.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds