Wall clock time and date at job start Tue Mar 31 2020 13:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47520 * 2 1 4 4 C 1.50702 * 109.47347 * 120.00694 * 2 1 3 5 5 O 1.21277 * 120.00089 * 99.99503 * 4 2 1 6 6 N 1.34782 * 119.99625 * 279.99712 * 4 2 1 7 7 C 1.46500 * 119.99828 * 179.97438 * 6 4 2 8 8 C 1.46501 * 120.00260 * 0.02562 * 6 4 2 9 9 S 1.81404 * 109.47131 * 240.00527 * 2 1 3 10 10 O 1.42102 * 110.54001 * 308.37474 * 9 2 1 11 11 O 1.42094 * 110.54459 * 171.62448 * 9 2 1 12 12 N 1.65607 * 104.44904 * 59.99972 * 9 2 1 13 13 C 1.46924 * 120.63051 * 269.72253 * 12 9 2 14 14 C 1.53194 * 108.77334 * 233.88542 * 13 12 9 15 15 C 1.53038 * 109.31101 * 305.36035 * 14 13 12 16 16 C 1.50696 * 109.44981 * 181.38015 * 15 14 13 17 17 H 1.08000 * 120.00355 * 239.94377 * 16 15 14 18 18 C 1.37882 * 119.99648 * 59.93911 * 16 15 14 19 19 N 1.31505 * 120.00164 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99675 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46904 * 90.00382 * 20 18 16 22 22 H 1.48498 * 109.46825 * 210.00134 * 20 18 16 23 23 H 1.48495 * 109.47228 * 330.00363 * 20 18 16 24 24 C 1.53045 * 109.53516 * 61.36880 * 15 14 13 25 25 C 1.46926 * 120.62900 * 90.00281 * 12 9 2 26 26 H 1.09005 * 109.46776 * 299.99730 * 1 2 3 27 27 H 1.09005 * 109.47074 * 59.99244 * 1 2 3 28 28 H 1.08998 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47331 * 90.00103 * 7 6 4 30 30 H 1.08998 * 109.47191 * 210.00306 * 7 6 4 31 31 H 1.09008 * 109.46874 * 329.99765 * 7 6 4 32 32 H 1.08997 * 109.47049 * 89.99593 * 8 6 4 33 33 H 1.08991 * 109.47222 * 209.99604 * 8 6 4 34 34 H 1.09005 * 109.46902 * 330.00030 * 8 6 4 35 35 H 1.09004 * 109.58777 * 353.67051 * 13 12 9 36 36 H 1.08994 * 109.58607 * 114.09387 * 13 12 9 37 37 H 1.09005 * 109.49558 * 185.41228 * 14 13 12 38 38 H 1.08996 * 109.52408 * 65.33314 * 14 13 12 39 39 H 1.08994 * 109.46487 * 301.34997 * 15 14 13 40 40 H 0.97006 * 120.00258 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.49685 * 178.67744 * 24 15 14 42 42 H 1.09001 * 109.52360 * 58.59815 * 24 15 14 43 43 H 1.09001 * 109.58178 * 245.90560 * 25 12 9 44 44 H 1.08998 * 109.58625 * 6.18576 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 1.2304 5 8 2.4064 -1.8618 1.1556 6 7 2.0659 -0.0666 2.4139 7 6 2.5538 -0.7574 3.6101 8 6 1.6136 1.3239 2.5044 9 16 2.1346 -0.8550 -1.4812 10 8 1.5220 -2.1312 -1.6053 11 8 3.5420 -0.7028 -1.6053 12 7 1.5164 0.0194 -2.7444 13 6 0.2074 -0.3190 -3.3194 14 6 0.3689 -0.5178 -4.8298 15 6 1.0194 0.7271 -5.4374 16 6 1.1488 0.5487 -6.9282 17 1 2.1233 0.5767 -7.3929 18 6 0.0230 0.3495 -7.6990 19 7 -1.1636 0.3157 -7.1332 20 14 0.1834 0.1291 -9.5470 21 1 0.3502 -1.3127 -9.8609 22 1 -1.0395 0.6428 -10.2147 23 1 1.3669 0.8819 -10.0345 24 6 2.4076 0.9294 -4.8257 25 6 2.2692 1.1446 -3.3154 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.6291 -0.6060 3.7041 30 1 2.0521 -0.3569 4.4910 31 1 2.3430 -1.8236 3.5253 32 1 0.5474 1.3452 2.7299 33 1 2.1626 1.8338 3.2959 34 1 1.7941 1.8273 1.5545 35 1 -0.1635 -1.2390 -2.8674 36 1 -0.4954 0.4924 -3.1307 37 1 -0.6101 -0.6747 -5.2829 38 1 1.0000 -1.3865 -5.0175 39 1 0.3999 1.5992 -5.2285 40 1 -1.9557 0.1760 -7.6755 41 1 2.8797 1.8026 -5.2759 42 1 3.0202 0.0475 -5.0129 43 1 1.7345 2.0754 -3.1263 44 1 3.2579 1.1919 -2.8588 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579433674.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:19 Heat of formation + Delta-G solvation = -101.828172 kcal Electronic energy + Delta-G solvation = -26413.411028 eV Core-core repulsion = 22686.260653 eV Total energy + Delta-G solvation = -3727.150375 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.35811 -37.75112 -36.93962 -36.07507 -35.60768 -33.77166 -33.27172 -30.83955 -30.05993 -28.47303 -26.82101 -25.73624 -24.54608 -22.52832 -22.29824 -20.21695 -19.42622 -18.25967 -17.96762 -17.09652 -16.93223 -16.28009 -16.09187 -15.70240 -15.45993 -14.54218 -14.36185 -14.07469 -13.82097 -13.53533 -13.23337 -13.16255 -13.05643 -12.88261 -12.79307 -12.76982 -12.54564 -12.42026 -12.14845 -12.02378 -11.85005 -11.79756 -11.29913 -10.91615 -10.85295 -10.66558 -10.61563 -10.37138 -10.27687 -10.01914 -9.53758 -9.18757 -9.16800 -8.94541 -8.40637 -8.24148 -5.99179 -4.04687 0.31476 2.11789 2.49208 2.96366 3.31884 3.38696 3.41882 3.84143 4.06181 4.12890 4.44653 4.50974 4.70112 4.75098 4.84759 4.88933 5.15725 5.18876 5.21643 5.26891 5.30906 5.34873 5.44741 5.74116 5.76545 5.84029 5.93398 6.08417 6.11159 6.33766 6.45391 6.50490 6.74289 6.75468 6.93493 7.10769 7.26403 7.45235 7.59800 7.74236 7.98818 8.10413 8.45614 8.98731 9.60158 11.06370 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.033481 B = 0.003330 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.103369 B = 8405.996336 C = 8482.401003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.643 4.643 3 H 0.153 0.847 4 C 0.545 3.455 5 O -0.530 6.530 6 N -0.612 5.612 7 C 0.081 3.919 8 C 0.073 3.927 9 S 2.634 3.366 10 O -0.932 6.932 11 O -0.951 6.951 12 N -0.987 5.987 13 C 0.114 3.886 14 C -0.121 4.121 15 C 0.051 3.949 16 C -0.512 4.512 17 H 0.055 0.945 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.120 4.120 25 C 0.117 3.883 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.041 0.959 39 H 0.028 0.972 40 H 0.260 0.740 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.942 5.098 20.878 21.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.749 4.749 3 H 0.171 0.829 4 C 0.331 3.669 5 O -0.406 6.406 6 N -0.345 5.345 7 C -0.061 4.061 8 C -0.070 4.070 9 S 2.721 3.279 10 O -0.922 6.922 11 O -0.941 6.941 12 N -0.828 5.828 13 C -0.010 4.010 14 C -0.160 4.160 15 C 0.032 3.968 16 C -0.550 4.550 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.159 4.159 25 C -0.008 4.008 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.476 3.733 20.817 21.293 hybrid contribution -0.347 0.678 -0.542 0.935 sum 2.129 4.411 20.275 20.858 Atomic orbital electron populations 1.21524 0.87265 1.04978 1.05065 1.31232 1.09689 1.16020 1.17946 0.82949 1.19426 0.77568 0.86070 0.83882 1.90853 1.47992 1.16638 1.85156 1.47587 1.64429 1.13994 1.08540 1.21753 0.99469 0.99063 0.85798 1.21956 1.00239 0.81146 1.03614 1.04668 0.74307 0.74709 0.74246 1.93559 1.77952 1.36306 1.84351 1.93547 1.29045 1.86527 1.84940 1.57734 1.31307 1.47946 1.45816 1.21804 0.81496 0.99564 0.98093 1.21975 1.04570 0.99791 0.89699 1.18607 0.89961 0.94071 0.94163 1.21229 0.92941 1.48853 0.91960 0.92693 1.24953 0.95405 0.95234 0.98389 1.69830 0.97705 1.50348 1.35211 0.86623 0.77417 0.78359 0.85754 1.20732 1.21337 1.20013 1.21952 1.01289 1.01024 0.91679 1.21583 0.94670 0.87517 0.97006 0.90541 0.89179 0.90094 0.92187 0.90816 0.90052 0.91871 0.90474 0.90449 0.90428 0.92107 0.87775 0.93988 0.95432 0.93029 0.92120 0.92640 0.92042 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 8.87 37.16 0.33 -0.96 16 2 C -0.64 -7.70 2.65 -27.88 -0.07 -7.78 16 3 H 0.15 1.29 6.31 -51.92 -0.33 0.96 16 4 C 0.54 7.38 6.85 -10.98 -0.08 7.30 16 5 O -0.53 -9.36 15.42 4.23 0.07 -9.30 16 6 N -0.61 -5.88 3.27 -189.52 -0.62 -6.50 16 7 C 0.08 0.63 10.44 59.85 0.62 1.26 16 8 C 0.07 0.41 9.56 59.85 0.57 0.98 16 9 S 2.63 45.37 4.22 -107.50 -0.45 44.91 16 10 O -0.93 -19.09 16.22 -60.10 -0.97 -20.07 16 11 O -0.95 -18.78 16.59 -57.54 -0.95 -19.74 16 12 N -0.99 -16.67 2.98 -113.53 -0.34 -17.01 16 13 C 0.11 2.06 5.34 -3.71 -0.02 2.04 16 14 C -0.12 -2.75 5.15 -26.61 -0.14 -2.88 16 15 C 0.05 1.19 2.06 -91.73 -0.19 1.00 16 16 C -0.51 -13.68 8.56 -34.44 -0.29 -13.97 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 19 N -0.89 -24.48 11.31 55.43 0.63 -23.85 16 20 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C -0.12 -2.41 5.30 -26.61 -0.14 -2.56 16 25 C 0.12 1.91 6.43 -3.71 -0.02 1.89 16 26 H 0.08 0.55 6.94 -51.93 -0.36 0.19 16 27 H 0.09 0.82 6.60 -51.93 -0.34 0.48 16 28 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 31 H 0.08 0.75 7.42 -51.92 -0.39 0.37 16 32 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 33 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 34 H 0.08 0.39 5.94 -51.93 -0.31 0.08 16 35 H 0.08 1.34 6.86 -51.93 -0.36 0.98 16 36 H 0.06 0.97 7.81 -51.93 -0.41 0.56 16 37 H 0.10 2.61 6.03 -51.93 -0.31 2.29 16 38 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 1.15 6.86 -51.93 -0.36 0.80 16 LS Contribution 354.97 15.07 5.35 5.35 Total: -1.00 -35.05 354.97 -8.74 -43.79 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.89 Total: -1.48 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 0.48 Total: -12.13 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -0.33 Total: -47.36 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -1.86 Total: -49.10 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 45.37 SS G_CDS: -0.45 Total: 44.91 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.05 -8.74 -43.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579433674.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.040 kcal (2) G-P(sol) polarization free energy of solvation -35.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds