Wall clock time and date at job start Tue Mar 31 2020 13:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47520 * 2 1 4 4 C 1.50702 * 109.47347 * 120.00694 * 2 1 3 5 5 O 1.21277 * 120.00089 * 99.99503 * 4 2 1 6 6 N 1.34782 * 119.99625 * 279.99712 * 4 2 1 7 7 C 1.46500 * 119.99828 * 179.97438 * 6 4 2 8 8 C 1.46501 * 120.00260 * 0.02562 * 6 4 2 9 9 S 1.81404 * 109.47131 * 240.00527 * 2 1 3 10 10 O 1.42102 * 110.54001 * 308.37474 * 9 2 1 11 11 O 1.42094 * 110.54459 * 171.62448 * 9 2 1 12 12 N 1.65607 * 104.44904 * 59.99972 * 9 2 1 13 13 C 1.46924 * 120.63051 * 269.72253 * 12 9 2 14 14 C 1.53194 * 108.77334 * 233.88542 * 13 12 9 15 15 C 1.53038 * 109.31101 * 305.36035 * 14 13 12 16 16 C 1.50696 * 109.44981 * 181.38015 * 15 14 13 17 17 H 1.08000 * 120.00355 * 239.94377 * 16 15 14 18 18 C 1.37882 * 119.99648 * 59.93911 * 16 15 14 19 19 N 1.31505 * 120.00164 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99675 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46904 * 90.00382 * 20 18 16 22 22 H 1.48498 * 109.46825 * 210.00134 * 20 18 16 23 23 H 1.48495 * 109.47228 * 330.00363 * 20 18 16 24 24 C 1.53045 * 109.53516 * 61.36880 * 15 14 13 25 25 C 1.46926 * 120.62900 * 90.00281 * 12 9 2 26 26 H 1.09005 * 109.46776 * 299.99730 * 1 2 3 27 27 H 1.09005 * 109.47074 * 59.99244 * 1 2 3 28 28 H 1.08998 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47331 * 90.00103 * 7 6 4 30 30 H 1.08998 * 109.47191 * 210.00306 * 7 6 4 31 31 H 1.09008 * 109.46874 * 329.99765 * 7 6 4 32 32 H 1.08997 * 109.47049 * 89.99593 * 8 6 4 33 33 H 1.08991 * 109.47222 * 209.99604 * 8 6 4 34 34 H 1.09005 * 109.46902 * 330.00030 * 8 6 4 35 35 H 1.09004 * 109.58777 * 353.67051 * 13 12 9 36 36 H 1.08994 * 109.58607 * 114.09387 * 13 12 9 37 37 H 1.09005 * 109.49558 * 185.41228 * 14 13 12 38 38 H 1.08996 * 109.52408 * 65.33314 * 14 13 12 39 39 H 1.08994 * 109.46487 * 301.34997 * 15 14 13 40 40 H 0.97006 * 120.00258 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.49685 * 178.67744 * 24 15 14 42 42 H 1.09001 * 109.52360 * 58.59815 * 24 15 14 43 43 H 1.09001 * 109.58178 * 245.90560 * 25 12 9 44 44 H 1.08998 * 109.58625 * 6.18576 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 1.2304 5 8 2.4064 -1.8618 1.1556 6 7 2.0659 -0.0666 2.4139 7 6 2.5538 -0.7574 3.6101 8 6 1.6136 1.3239 2.5044 9 16 2.1346 -0.8550 -1.4812 10 8 1.5220 -2.1312 -1.6053 11 8 3.5420 -0.7028 -1.6053 12 7 1.5164 0.0194 -2.7444 13 6 0.2074 -0.3190 -3.3194 14 6 0.3689 -0.5178 -4.8298 15 6 1.0194 0.7271 -5.4374 16 6 1.1488 0.5487 -6.9282 17 1 2.1233 0.5767 -7.3929 18 6 0.0230 0.3495 -7.6990 19 7 -1.1636 0.3157 -7.1332 20 14 0.1834 0.1291 -9.5470 21 1 0.3502 -1.3127 -9.8609 22 1 -1.0395 0.6428 -10.2147 23 1 1.3669 0.8819 -10.0345 24 6 2.4076 0.9294 -4.8257 25 6 2.2692 1.1446 -3.3154 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.6291 -0.6060 3.7041 30 1 2.0521 -0.3569 4.4910 31 1 2.3430 -1.8236 3.5253 32 1 0.5474 1.3452 2.7299 33 1 2.1626 1.8338 3.2959 34 1 1.7941 1.8273 1.5545 35 1 -0.1635 -1.2390 -2.8674 36 1 -0.4954 0.4924 -3.1307 37 1 -0.6101 -0.6747 -5.2829 38 1 1.0000 -1.3865 -5.0175 39 1 0.3999 1.5992 -5.2285 40 1 -1.9557 0.1760 -7.6755 41 1 2.8797 1.8026 -5.2759 42 1 3.0202 0.0475 -5.0129 43 1 1.7345 2.0754 -3.1263 44 1 3.2579 1.1919 -2.8588 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579433674.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:18 Heat of formation + Delta-G solvation = -128.090309 kcal Electronic energy + Delta-G solvation = -26414.549840 eV Core-core repulsion = 22686.260653 eV Total energy + Delta-G solvation = -3728.289187 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.29445 -39.30021 -38.37022 -37.12089 -36.84708 -35.32573 -34.48091 -32.59009 -31.64368 -29.00785 -27.63287 -27.50363 -25.39316 -24.16465 -23.90279 -21.32615 -20.88607 -19.56277 -19.09791 -18.42437 -18.17356 -17.88775 -17.17685 -16.79843 -16.53594 -16.48572 -15.48849 -15.11855 -14.97239 -14.88560 -14.69640 -14.41061 -14.30767 -14.06150 -13.70981 -13.66887 -13.49360 -13.46158 -13.32623 -13.26676 -13.05914 -12.91401 -12.87982 -12.76186 -12.56894 -12.39797 -12.05520 -11.84104 -11.73412 -11.36804 -11.30098 -10.93516 -10.75808 -10.35540 -9.89163 -9.79366 -8.04552 -6.16428 -0.98319 1.15625 1.41569 1.44176 1.52239 1.53152 1.86406 2.46180 2.80740 2.98155 3.05180 3.22027 3.61230 3.73575 3.84540 4.24365 4.33566 4.36275 4.40623 4.44913 4.52330 4.54787 4.57994 4.72330 4.74344 4.81710 4.86972 4.88033 4.90833 4.96356 5.07965 5.16050 5.29164 5.31361 5.36798 5.59446 5.68578 5.75143 5.98848 6.08121 6.19796 6.46323 6.70599 6.93747 7.50510 8.98695 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.033481 B = 0.003330 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.103369 B = 8405.996336 C = 8482.401003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.609 4.609 3 H 0.199 0.801 4 C 0.529 3.471 5 O -0.587 6.587 6 N -0.601 5.601 7 C 0.073 3.927 8 C 0.057 3.943 9 S 2.625 3.375 10 O -0.980 6.980 11 O -0.988 6.988 12 N -0.989 5.989 13 C 0.125 3.875 14 C -0.119 4.119 15 C 0.049 3.951 16 C -0.536 4.536 17 H 0.045 0.955 18 C 0.017 3.983 19 N -0.910 5.910 20 Si 0.945 3.055 21 H -0.283 1.283 22 H -0.280 1.280 23 H -0.271 1.271 24 C -0.120 4.120 25 C 0.119 3.881 26 H 0.115 0.885 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.011 0.989 39 H 0.018 0.982 40 H 0.261 0.739 41 H 0.070 0.930 42 H 0.030 0.970 43 H 0.100 0.900 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.304 7.979 23.295 24.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.722 4.722 3 H 0.216 0.784 4 C 0.315 3.685 5 O -0.468 6.468 6 N -0.332 5.332 7 C -0.068 4.068 8 C -0.084 4.084 9 S 2.720 3.280 10 O -0.970 6.970 11 O -0.978 6.978 12 N -0.829 5.829 13 C 0.001 3.999 14 C -0.159 4.159 15 C 0.031 3.969 16 C -0.574 4.574 17 H 0.063 0.937 18 C -0.182 4.182 19 N -0.549 5.549 20 Si 0.772 3.228 21 H -0.210 1.210 22 H -0.206 1.206 23 H -0.196 1.196 24 C -0.159 4.159 25 C -0.005 4.005 26 H 0.133 0.867 27 H 0.122 0.878 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.130 0.870 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.030 0.970 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.049 0.951 43 H 0.118 0.882 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.859 6.633 23.201 24.202 hybrid contribution -0.140 -0.176 -1.169 1.190 sum 1.719 6.457 22.032 23.023 Atomic orbital electron populations 1.21707 0.85200 1.04781 1.07644 1.30816 1.11183 1.16912 1.13275 0.78384 1.19721 0.77721 0.85695 0.85380 1.90840 1.50825 1.19102 1.86050 1.47777 1.62501 1.15430 1.07495 1.21956 1.00404 0.98103 0.86369 1.22393 1.01952 0.78653 1.05361 1.04457 0.73458 0.74357 0.75755 1.93498 1.78296 1.39522 1.85699 1.93493 1.31245 1.86905 1.86144 1.57527 1.30661 1.47880 1.46829 1.21615 0.82700 1.01113 0.94489 1.21809 1.02252 0.98326 0.93485 1.18571 0.91825 0.93706 0.92844 1.21626 0.92606 1.49044 0.94167 0.93695 1.25610 0.95312 0.95182 1.02080 1.69931 0.98021 1.50685 1.36312 0.85760 0.77608 0.77984 0.81479 1.20977 1.20585 1.19590 1.21878 0.98722 1.00402 0.94934 1.21672 0.96294 0.88646 0.93903 0.86655 0.87812 0.91851 0.91608 0.87005 0.92311 0.89756 0.87904 0.89339 0.90071 0.88997 0.90380 0.96983 0.96339 0.92998 0.91101 0.95082 0.88177 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.87 71.98 0.64 -1.53 16 2 C -0.61 -12.76 2.65 29.85 0.08 -12.68 16 3 H 0.20 2.28 6.31 -2.39 -0.02 2.26 16 4 C 0.53 13.32 6.85 87.66 0.60 13.92 16 5 O -0.59 -21.04 15.42 -1.75 -0.03 -21.06 16 6 N -0.60 -9.47 3.27 -871.89 -2.85 -12.32 16 7 C 0.07 0.95 10.44 127.77 1.33 2.29 16 8 C 0.06 0.32 9.56 127.77 1.22 1.54 16 9 S 2.63 89.56 4.22 -56.49 -0.24 89.33 16 10 O -0.98 -41.66 16.22 -125.20 -2.03 -43.69 16 11 O -0.99 -39.30 16.59 -127.65 -2.12 -41.41 16 12 N -0.99 -32.23 2.98 -513.09 -1.53 -33.76 16 13 C 0.13 4.43 5.34 86.36 0.46 4.89 16 14 C -0.12 -5.58 5.15 30.67 0.16 -5.42 16 15 C 0.05 2.35 2.06 -11.51 -0.02 2.32 16 16 C -0.54 -29.37 8.56 25.60 0.22 -29.15 16 17 H 0.04 2.47 7.74 -2.91 -0.02 2.45 16 18 C 0.02 0.93 5.30 84.66 0.45 1.38 16 19 N -0.91 -50.67 11.31 21.45 0.24 -50.42 16 20 Si 0.95 43.72 29.54 68.60 2.03 45.74 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 24 C -0.12 -4.82 5.30 30.67 0.16 -4.66 16 25 C 0.12 3.64 6.43 86.36 0.56 4.19 16 26 H 0.11 1.01 6.94 -2.38 -0.02 1.00 16 27 H 0.10 1.43 6.60 -2.38 -0.02 1.42 16 28 H 0.06 1.29 8.11 -2.39 -0.02 1.27 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.11 0.59 8.07 -2.39 -0.02 0.57 16 31 H 0.06 1.05 7.42 -2.38 -0.02 1.04 16 32 H 0.08 0.20 7.66 -2.39 -0.02 0.18 16 33 H 0.10 0.13 8.07 -2.39 -0.02 0.11 16 34 H 0.09 0.33 5.94 -2.38 -0.01 0.31 16 35 H 0.08 2.81 6.86 -2.38 -0.02 2.79 16 36 H 0.09 2.70 7.81 -2.39 -0.02 2.68 16 37 H 0.08 4.05 6.03 -2.38 -0.01 4.03 16 38 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.26 13.88 8.31 -92.70 -0.77 13.11 16 41 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.09 2.58 6.86 -2.39 -0.02 2.57 16 Total: -1.00 -82.37 354.97 0.31 -82.06 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 0.99 Total: 8.44 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 5.85 Total: -22.91 kcal Atomic # 7 Polarization: -92.36 SS G_CDS: -4.14 Total: -96.50 kcal Atomic # 8 Polarization: -101.99 SS G_CDS: -4.17 Total: -106.16 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 89.56 SS G_CDS: -0.24 Total: 89.33 kcal Total: -82.37 0.31 -82.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579433674.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.028 kcal (2) G-P(sol) polarization free energy of solvation -82.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds