Wall clock time and date at job start Tue Mar 31 2020 12:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 120.00178 * 2 1 4 4 O 1.42900 * 109.46833 * 134.99905 * 3 2 1 5 5 C 1.35652 * 116.99615 * 180.02562 * 4 3 2 6 6 C 1.39338 * 120.54107 * 0.02562 * 5 4 3 7 7 C 1.38305 * 118.44178 * 179.97438 * 6 5 4 8 8 C 1.38769 * 119.44245 * 359.97438 * 7 6 5 9 9 N 1.31378 * 121.06762 * 359.72496 * 8 7 6 10 10 C 1.32865 * 121.69474 * 0.56756 * 9 8 7 11 11 C 1.47818 * 119.78316 * 179.70675 * 10 9 8 12 12 O 1.21560 * 120.00144 * 179.72208 * 11 10 9 13 13 N 1.34776 * 120.00235 * 359.72898 * 11 10 9 14 14 C 1.47422 * 125.64926 * 0.02664 * 13 11 10 15 15 C 1.54909 * 104.83564 * 155.82503 * 14 13 11 16 16 C 1.55152 * 101.58032 * 37.00513 * 15 14 13 17 17 O 1.42903 * 110.72100 * 82.86680 * 16 15 14 18 18 C 1.50703 * 110.71825 * 205.95483 * 16 15 14 19 19 H 1.07993 * 120.00249 * 357.56786 * 18 16 15 20 20 C 1.37877 * 119.99923 * 177.55974 * 18 16 15 21 21 N 1.31521 * 120.00053 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 120.00236 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46913 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47079 * 119.99981 * 22 20 18 25 25 H 1.48501 * 109.46992 * 240.00088 * 22 20 18 26 26 C 1.47027 * 125.65206 * 179.97438 * 13 11 10 27 27 H 1.07999 * 119.99566 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.99637 * 179.97438 * 1 2 3 29 29 H 1.08003 * 120.00007 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.46792 * 15.00248 * 3 2 1 31 31 H 1.08993 * 109.47482 * 255.00080 * 3 2 1 32 32 H 1.07997 * 120.78595 * 359.95720 * 6 5 4 33 33 H 1.07999 * 120.27969 * 180.02562 * 7 6 5 34 34 H 1.08002 * 119.46619 * 180.02562 * 8 7 6 35 35 H 1.09002 * 110.36847 * 36.97758 * 14 13 11 36 36 H 1.09005 * 110.45737 * 274.70993 * 14 13 11 37 37 H 1.09005 * 111.00113 * 278.93173 * 15 14 13 38 38 H 1.08998 * 111.03822 * 155.09465 * 15 14 13 39 39 H 0.96700 * 114.00311 * 179.97438 * 17 16 15 40 40 H 0.97000 * 119.99959 * 179.97438 * 21 20 18 41 41 H 1.09003 * 109.87825 * 61.68763 * 26 13 11 42 42 H 1.09001 * 109.88209 * 300.52818 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9077 2.3432 1.0787 6 6 3.6649 3.4755 0.3038 7 6 4.4877 4.5749 0.4681 8 6 5.5221 4.5209 1.3916 9 7 5.7288 3.4444 2.1159 10 6 4.9689 2.3618 1.9899 11 6 5.2434 1.1713 2.8220 12 8 4.5475 0.1805 2.7136 13 7 6.2650 1.1843 3.7009 14 6 7.1834 2.3137 3.9341 15 6 7.7186 2.0994 5.3719 16 6 7.8486 0.5543 5.4288 17 8 9.0797 0.1286 4.8413 18 6 7.7396 0.0620 6.8490 19 1 7.6306 0.7685 7.6585 20 6 7.7789 -1.2903 7.1147 21 7 7.9120 -2.1506 6.1289 22 14 7.6431 -1.9006 8.8750 23 1 7.5028 -0.7407 9.7916 24 1 6.4537 -2.7803 9.0035 25 1 8.8654 -2.6659 9.2292 26 6 6.6475 0.0751 4.5869 27 1 -0.5399 0.9353 -0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3856 2.1160 0.2660 31 1 2.4756 1.4868 -0.9926 32 1 2.8535 3.4941 -0.4086 33 1 4.3261 5.4683 -0.1168 34 1 6.1646 5.3794 1.5206 35 1 6.6463 3.2598 3.8662 36 1 8.0039 2.2919 3.2168 37 1 7.0040 2.4589 6.1124 38 1 8.6888 2.5782 5.5038 39 1 9.2100 -0.8295 4.8519 40 1 7.9400 -3.1020 6.3159 41 1 6.9341 -0.7923 3.9922 42 1 5.8144 -0.1807 5.2416 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:07 Heat of formation + Delta-G solvation = -44.493466 kcal Electronic energy + Delta-G solvation = -26825.567049 eV Core-core repulsion = 22965.458942 eV Total energy + Delta-G solvation = -3860.108107 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.92358 -38.97426 -38.30534 -36.95847 -34.40089 -34.10042 -32.45307 -32.11424 -30.66104 -29.77125 -27.68943 -26.92696 -25.57451 -24.13014 -22.92817 -22.23377 -20.33547 -19.69041 -19.26545 -18.18322 -17.28457 -17.00467 -16.76932 -16.30190 -15.40770 -15.30221 -15.10016 -14.77207 -14.54936 -14.35471 -13.96846 -13.69946 -13.30488 -13.00408 -12.83696 -12.81835 -12.64997 -12.26304 -11.82389 -11.71677 -11.56111 -11.34036 -11.24390 -11.01807 -10.71120 -10.46919 -10.42030 -10.14157 -9.95574 -9.77901 -9.72687 -9.21258 -9.04932 -8.58665 -8.52595 -8.21785 -7.65600 -6.22063 -4.30451 0.68097 1.12281 1.81934 3.11317 3.13042 3.24437 3.33077 3.36923 3.61734 4.03184 4.29953 4.34529 4.40176 4.55686 4.62624 4.77358 4.87120 4.91394 5.05742 5.07788 5.16613 5.37293 5.58188 5.69829 5.73408 5.80225 5.99686 6.07243 6.19218 6.29450 6.30519 6.36800 6.57905 6.71365 6.91261 7.01693 7.11201 7.18392 7.38141 7.48509 7.75913 7.80629 8.09476 8.36047 8.72876 8.86716 9.38265 9.49492 10.85551 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.003706 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.076963 B = 7552.964439 C = 8965.789657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.148 4.148 3 C 0.078 3.922 4 O -0.264 6.264 5 C 0.134 3.866 6 C -0.179 4.179 7 C -0.115 4.115 8 C 0.052 3.948 9 N -0.411 5.411 10 C 0.061 3.939 11 C 0.568 3.432 12 O -0.529 6.529 13 N -0.591 5.591 14 C 0.107 3.893 15 C -0.123 4.123 16 C 0.247 3.753 17 O -0.585 6.585 18 C -0.535 4.535 19 H 0.067 0.933 20 C 0.069 3.931 21 N -0.895 5.895 22 Si 0.903 3.097 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.104 3.896 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.124 0.876 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.164 0.836 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.383 0.617 40 H 0.269 0.731 41 H 0.065 0.935 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.258 12.134 -13.846 21.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.166 4.166 3 C 0.003 3.997 4 O -0.174 6.174 5 C 0.083 3.917 6 C -0.205 4.205 7 C -0.135 4.135 8 C -0.108 4.108 9 N -0.123 5.123 10 C -0.078 4.078 11 C 0.354 3.646 12 O -0.406 6.406 13 N -0.322 5.322 14 C -0.016 4.016 15 C -0.161 4.161 16 C 0.207 3.793 17 O -0.394 6.394 18 C -0.574 4.574 19 H 0.085 0.915 20 C -0.134 4.134 21 N -0.535 5.535 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.017 4.017 27 H 0.116 0.884 28 H 0.126 0.874 29 H 0.142 0.858 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.181 0.819 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.234 0.766 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.927 11.771 -13.351 20.380 hybrid contribution -0.967 -0.789 0.092 1.252 sum -10.894 10.982 -13.259 20.374 Atomic orbital electron populations 1.23834 0.95317 1.02427 0.99674 1.22660 0.95600 0.97917 1.00391 1.21961 0.88213 0.97297 0.92238 1.86495 1.40661 1.33352 1.56881 1.20015 0.90960 0.86894 0.93809 1.21696 1.03036 0.93513 1.02297 1.22145 0.94762 0.98423 0.98164 1.22815 0.97414 0.96732 0.93818 1.68054 1.24382 0.98836 1.21015 1.20980 0.93659 0.94933 0.98233 1.17243 0.81090 0.85949 0.80299 1.90809 1.48644 1.33119 1.68013 1.48584 1.28544 1.17863 1.37228 1.22564 0.92360 0.89898 0.96751 1.22824 1.00597 0.97753 0.94892 1.19503 0.80620 0.88962 0.90251 1.86092 1.40572 1.29454 1.83326 1.21586 1.51231 0.92220 0.92327 0.91478 1.25087 0.93555 0.96750 0.97970 1.69663 1.49751 1.02744 1.31311 0.86359 0.77746 0.78816 0.84044 1.19596 1.20808 1.20778 1.23023 0.99533 0.87882 0.91277 0.88438 0.87374 0.85821 0.91514 0.91017 0.83975 0.84245 0.81901 0.89223 0.92153 0.90836 0.90739 0.76584 0.92076 0.91684 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 14.31 29.01 0.42 -1.07 16 2 C -0.15 -1.57 9.89 -36.02 -0.36 -1.93 16 3 C 0.08 0.83 5.17 36.01 0.19 1.02 16 4 O -0.26 -4.22 8.18 -40.61 -0.33 -4.56 16 5 C 0.13 2.04 6.71 -38.56 -0.26 1.78 16 6 C -0.18 -1.89 9.13 -39.15 -0.36 -2.25 16 7 C -0.11 -1.04 10.10 -39.36 -0.40 -1.44 16 8 C 0.05 0.58 11.17 -17.55 -0.20 0.38 16 9 N -0.41 -6.36 6.59 -9.71 -0.06 -6.42 16 10 C 0.06 1.10 6.73 -82.89 -0.56 0.54 16 11 C 0.57 12.65 7.83 -12.34 -0.10 12.55 16 12 O -0.53 -13.22 15.47 -16.64 -0.26 -13.48 16 13 N -0.59 -13.38 3.33 -171.64 -0.57 -13.95 16 14 C 0.11 2.13 5.93 -2.53 -0.02 2.11 16 15 C -0.12 -2.61 6.22 -24.59 -0.15 -2.77 16 16 C 0.25 6.25 0.86 -89.94 -0.08 6.17 16 17 O -0.59 -15.33 13.09 -35.23 -0.46 -15.80 16 18 C -0.54 -14.41 8.12 -34.44 -0.28 -14.69 16 19 H 0.07 1.78 7.77 -52.49 -0.41 1.37 16 20 C 0.07 1.85 5.26 -17.82 -0.09 1.76 16 21 N -0.90 -24.45 10.97 55.43 0.61 -23.85 16 22 Si 0.90 20.89 29.54 -169.99 -5.02 15.86 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 C 0.10 2.67 5.39 -3.07 -0.02 2.65 16 27 H 0.10 0.67 7.90 -52.49 -0.41 0.26 16 28 H 0.11 0.79 8.06 -52.49 -0.42 0.36 16 29 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 30 H 0.07 0.58 7.41 -51.93 -0.39 0.19 16 31 H 0.07 0.61 7.70 -51.93 -0.40 0.21 16 32 H 0.14 1.04 6.46 -52.49 -0.34 0.70 16 33 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.09 1.59 5.87 -51.93 -0.30 1.29 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.07 1.51 8.04 -51.93 -0.42 1.09 16 38 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.38 10.28 7.17 45.56 0.33 10.60 16 40 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.06 1.80 8.01 -51.93 -0.42 1.39 16 42 H 0.07 1.82 7.82 -51.93 -0.41 1.41 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -32.64 352.30 -7.88 -40.52 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -4.84 Total: 11.54 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -2.25 Total: 4.81 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -0.03 Total: -44.22 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -1.05 Total: -33.83 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.64 -7.88 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.972 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds