Wall clock time and date at job start Tue Mar 31 2020 12:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 120.00178 * 2 1 4 4 O 1.42900 * 109.46833 * 134.99905 * 3 2 1 5 5 C 1.35652 * 116.99615 * 180.02562 * 4 3 2 6 6 C 1.39338 * 120.54107 * 0.02562 * 5 4 3 7 7 C 1.38305 * 118.44178 * 179.97438 * 6 5 4 8 8 C 1.38769 * 119.44245 * 359.97438 * 7 6 5 9 9 N 1.31378 * 121.06762 * 359.72496 * 8 7 6 10 10 C 1.32865 * 121.69474 * 0.56756 * 9 8 7 11 11 C 1.47818 * 119.78316 * 179.70675 * 10 9 8 12 12 O 1.21560 * 120.00144 * 179.72208 * 11 10 9 13 13 N 1.34776 * 120.00235 * 359.72898 * 11 10 9 14 14 C 1.47422 * 125.64926 * 0.02664 * 13 11 10 15 15 C 1.54909 * 104.83564 * 155.82503 * 14 13 11 16 16 C 1.55152 * 101.58032 * 37.00513 * 15 14 13 17 17 O 1.42903 * 110.72100 * 82.86680 * 16 15 14 18 18 C 1.50703 * 110.71825 * 205.95483 * 16 15 14 19 19 H 1.07993 * 120.00249 * 357.56786 * 18 16 15 20 20 C 1.37877 * 119.99923 * 177.55974 * 18 16 15 21 21 N 1.31521 * 120.00053 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 120.00236 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46913 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47079 * 119.99981 * 22 20 18 25 25 H 1.48501 * 109.46992 * 240.00088 * 22 20 18 26 26 C 1.47027 * 125.65206 * 179.97438 * 13 11 10 27 27 H 1.07999 * 119.99566 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.99637 * 179.97438 * 1 2 3 29 29 H 1.08003 * 120.00007 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.46792 * 15.00248 * 3 2 1 31 31 H 1.08993 * 109.47482 * 255.00080 * 3 2 1 32 32 H 1.07997 * 120.78595 * 359.95720 * 6 5 4 33 33 H 1.07999 * 120.27969 * 180.02562 * 7 6 5 34 34 H 1.08002 * 119.46619 * 180.02562 * 8 7 6 35 35 H 1.09002 * 110.36847 * 36.97758 * 14 13 11 36 36 H 1.09005 * 110.45737 * 274.70993 * 14 13 11 37 37 H 1.09005 * 111.00113 * 278.93173 * 15 14 13 38 38 H 1.08998 * 111.03822 * 155.09465 * 15 14 13 39 39 H 0.96700 * 114.00311 * 179.97438 * 17 16 15 40 40 H 0.97000 * 119.99959 * 179.97438 * 21 20 18 41 41 H 1.09003 * 109.87825 * 61.68763 * 26 13 11 42 42 H 1.09001 * 109.88209 * 300.52818 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9077 2.3432 1.0787 6 6 3.6649 3.4755 0.3038 7 6 4.4877 4.5749 0.4681 8 6 5.5221 4.5209 1.3916 9 7 5.7288 3.4444 2.1159 10 6 4.9689 2.3618 1.9899 11 6 5.2434 1.1713 2.8220 12 8 4.5475 0.1805 2.7136 13 7 6.2650 1.1843 3.7009 14 6 7.1834 2.3137 3.9341 15 6 7.7186 2.0994 5.3719 16 6 7.8486 0.5543 5.4288 17 8 9.0797 0.1286 4.8413 18 6 7.7396 0.0620 6.8490 19 1 7.6306 0.7685 7.6585 20 6 7.7789 -1.2903 7.1147 21 7 7.9120 -2.1506 6.1289 22 14 7.6431 -1.9006 8.8750 23 1 7.5028 -0.7407 9.7916 24 1 6.4537 -2.7803 9.0035 25 1 8.8654 -2.6659 9.2292 26 6 6.6475 0.0751 4.5869 27 1 -0.5399 0.9353 -0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3856 2.1160 0.2660 31 1 2.4756 1.4868 -0.9926 32 1 2.8535 3.4941 -0.4086 33 1 4.3261 5.4683 -0.1168 34 1 6.1646 5.3794 1.5206 35 1 6.6463 3.2598 3.8662 36 1 8.0039 2.2919 3.2168 37 1 7.0040 2.4589 6.1124 38 1 8.6888 2.5782 5.5038 39 1 9.2100 -0.8295 4.8519 40 1 7.9400 -3.1020 6.3159 41 1 6.9341 -0.7923 3.9922 42 1 5.8144 -0.1807 5.2416 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:06 Heat of formation + Delta-G solvation = -67.508921 kcal Electronic energy + Delta-G solvation = -26826.565074 eV Core-core repulsion = 22965.458942 eV Total energy + Delta-G solvation = -3861.106132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.01868 -40.56621 -39.35379 -38.79270 -36.09214 -35.09298 -34.21139 -33.45764 -31.88966 -31.34649 -29.57764 -27.77091 -27.32728 -25.55378 -23.88387 -23.79200 -21.55272 -21.20483 -20.70692 -19.17979 -19.13096 -18.48828 -17.96589 -17.36898 -17.11544 -16.72996 -16.49120 -16.29309 -15.81155 -15.68084 -15.17408 -14.89374 -14.74735 -14.63450 -14.49799 -14.06550 -13.84755 -13.66313 -13.48334 -13.26798 -13.00682 -12.87950 -12.58336 -12.49222 -12.30194 -12.24325 -12.08262 -11.97899 -11.34707 -11.11311 -10.81652 -10.71633 -10.53490 -10.32542 -10.24987 -9.69413 -9.34947 -8.27512 -6.44349 -0.34618 0.24429 1.06844 1.39582 1.41807 1.53798 1.77960 2.03363 2.26852 2.37526 2.83322 2.98623 3.17788 3.56184 3.65820 3.85899 3.89533 4.00894 4.05478 4.08802 4.13960 4.23088 4.32687 4.40965 4.46891 4.53251 4.69058 4.87833 4.91153 4.92647 5.01344 5.02215 5.16396 5.33373 5.39040 5.46931 5.53045 5.57204 5.63814 5.73673 6.03408 6.24277 6.60070 6.65639 6.79700 7.19179 7.27201 7.34884 8.79067 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.003706 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.076963 B = 7552.964439 C = 8965.789657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.185 4.185 3 C 0.074 3.926 4 O -0.307 6.307 5 C 0.124 3.876 6 C -0.169 4.169 7 C -0.082 4.082 8 C 0.053 3.947 9 N -0.436 5.436 10 C 0.010 3.990 11 C 0.559 3.441 12 O -0.575 6.575 13 N -0.601 5.601 14 C 0.120 3.880 15 C -0.116 4.116 16 C 0.234 3.766 17 O -0.588 6.588 18 C -0.557 4.557 19 H 0.069 0.931 20 C 0.023 3.977 21 N -0.919 5.919 22 Si 0.968 3.032 23 H -0.263 1.263 24 H -0.284 1.284 25 H -0.275 1.275 26 C 0.123 3.877 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.182 0.818 33 H 0.195 0.805 34 H 0.203 0.797 35 H 0.118 0.882 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.376 0.624 40 H 0.271 0.729 41 H 0.028 0.972 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.501 16.104 -15.253 24.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.203 4.203 3 C 0.000 4.000 4 O -0.218 6.218 5 C 0.073 3.927 6 C -0.195 4.195 7 C -0.102 4.102 8 C -0.109 4.109 9 N -0.148 5.148 10 C -0.126 4.126 11 C 0.348 3.652 12 O -0.456 6.456 13 N -0.333 5.333 14 C -0.001 4.001 15 C -0.154 4.154 16 C 0.194 3.806 17 O -0.396 6.396 18 C -0.595 4.595 19 H 0.087 0.913 20 C -0.177 4.177 21 N -0.558 5.558 22 Si 0.793 3.207 23 H -0.187 1.187 24 H -0.210 1.210 25 H -0.200 1.200 26 C -0.001 4.001 27 H 0.140 0.860 28 H 0.135 0.865 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.199 0.801 33 H 0.212 0.788 34 H 0.219 0.781 35 H 0.135 0.865 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.226 0.774 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -11.168 15.755 -14.764 24.309 hybrid contribution -0.690 -1.922 0.366 2.074 sum -11.858 13.833 -14.399 23.223 Atomic orbital electron populations 1.24098 0.94457 1.03997 0.96330 1.22677 0.96583 0.97496 1.03585 1.22255 0.87571 0.97856 0.92341 1.86446 1.42061 1.34732 1.58583 1.20211 0.90292 0.88195 0.94030 1.22169 1.03985 0.91879 1.01454 1.22775 0.92007 0.99228 0.96152 1.23604 0.98270 0.96053 0.92975 1.67804 1.24706 0.99380 1.22908 1.20217 0.97128 0.94534 1.00683 1.18152 0.79816 0.87271 0.79914 1.90748 1.50006 1.35442 1.69369 1.48667 1.29622 1.17610 1.37394 1.22600 0.91995 0.90038 0.95501 1.22836 1.01753 0.94644 0.96171 1.19708 0.79785 0.91637 0.89511 1.86077 1.41163 1.28871 1.83525 1.21887 1.51724 0.92779 0.93140 0.91306 1.25885 0.93084 0.96914 1.01856 1.69778 1.50012 1.02930 1.33123 0.85356 0.77645 0.78310 0.79432 1.18725 1.20971 1.20030 1.22531 0.98588 0.88141 0.90802 0.86050 0.86514 0.88348 0.88920 0.88902 0.80114 0.78774 0.78079 0.86475 0.92297 0.90132 0.89152 0.77394 0.92007 0.95401 0.94961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 14.31 67.78 0.97 -1.39 16 2 C -0.19 -3.99 9.89 25.65 0.25 -3.74 16 3 C 0.07 1.49 5.17 71.24 0.37 1.86 16 4 O -0.31 -10.07 8.18 -68.68 -0.56 -10.64 16 5 C 0.12 3.66 6.71 22.93 0.15 3.81 16 6 C -0.17 -2.83 9.13 22.55 0.21 -2.63 16 7 C -0.08 -0.99 10.10 22.41 0.23 -0.76 16 8 C 0.05 0.93 11.17 84.89 0.95 1.88 16 9 N -0.44 -12.76 6.59 -184.63 -1.22 -13.98 16 10 C 0.01 0.36 6.73 41.92 0.28 0.64 16 11 C 0.56 26.56 7.83 86.78 0.68 27.24 16 12 O -0.58 -31.37 15.47 17.08 0.26 -31.10 16 13 N -0.60 -28.86 3.33 -815.22 -2.71 -31.57 16 14 C 0.12 4.82 5.93 86.86 0.52 5.34 16 15 C -0.12 -4.98 6.22 31.98 0.20 -4.78 16 16 C 0.23 12.31 0.86 -10.36 -0.01 12.30 16 17 O -0.59 -32.08 13.09 -148.98 -1.95 -34.04 16 18 C -0.56 -30.91 8.12 25.60 0.21 -30.70 16 19 H 0.07 3.70 7.77 -2.91 -0.02 3.68 16 20 C 0.02 1.26 5.26 84.65 0.45 1.71 16 21 N -0.92 -52.53 10.97 21.45 0.24 -52.30 16 22 Si 0.97 43.72 29.54 68.60 2.03 45.75 16 23 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 26 C 0.12 6.76 5.39 86.72 0.47 7.22 16 27 H 0.12 1.29 7.90 -2.91 -0.02 1.27 16 28 H 0.12 1.56 8.06 -2.91 -0.02 1.54 16 29 H 0.10 2.54 8.06 -2.91 -0.02 2.51 16 30 H 0.09 1.31 7.41 -2.39 -0.02 1.30 16 31 H 0.09 1.38 7.70 -2.39 -0.02 1.36 16 32 H 0.18 1.57 6.46 -2.91 -0.02 1.55 16 33 H 0.20 0.33 8.06 -2.91 -0.02 0.31 16 34 H 0.20 1.89 8.06 -2.91 -0.02 1.86 16 35 H 0.12 4.06 5.87 -2.39 -0.01 4.05 16 36 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.08 3.31 8.04 -2.38 -0.02 3.29 16 38 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 39 H 0.38 21.33 7.17 -74.06 -0.53 20.80 16 40 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 41 H 0.03 1.69 8.01 -2.39 -0.02 1.67 16 42 H 0.03 1.93 7.82 -2.39 -0.02 1.91 16 Total: -1.00 -79.69 352.30 2.52 -77.17 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: 0.51 Total: 32.70 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 5.92 Total: 18.00 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -3.69 Total: -97.85 kcal Atomic # 8 Polarization: -73.53 SS G_CDS: -2.25 Total: -75.77 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -79.69 2.52 -77.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.662 kcal (2) G-P(sol) polarization free energy of solvation -79.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds