Wall clock time and date at job start Tue Mar 31 2020 12:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50696 * 120.00260 * 2 1 4 4 O 1.42902 * 109.47146 * 134.99879 * 3 2 1 5 5 C 1.35643 * 117.00207 * 180.02562 * 4 3 2 6 6 C 1.39352 * 120.54288 * 0.22866 * 5 4 3 7 7 C 1.38291 * 118.44111 * 180.28273 * 6 5 4 8 8 C 1.38764 * 119.44966 * 359.73078 * 7 6 5 9 9 N 1.31380 * 121.06204 * 0.02562 * 8 7 6 10 10 C 1.32855 * 121.69800 * 359.97438 * 9 8 7 11 11 C 1.47832 * 119.78474 * 179.97438 * 10 9 8 12 12 O 1.21550 * 120.00030 * 179.97438 * 11 10 9 13 13 N 1.34776 * 119.99882 * 359.72419 * 11 10 9 14 14 C 1.47423 * 125.64895 * 0.29904 * 13 11 10 15 15 C 1.54912 * 104.83424 * 204.09228 * 14 13 11 16 16 C 1.55163 * 101.57793 * 322.98807 * 15 14 13 17 17 O 1.42899 * 110.72081 * 277.13708 * 16 15 14 18 18 C 1.50699 * 110.71740 * 154.04178 * 16 15 14 19 19 H 1.08006 * 120.00055 * 268.66076 * 18 16 15 20 20 C 1.37878 * 120.00244 * 88.65722 * 18 16 15 21 21 N 1.31514 * 120.00551 * 173.91440 * 20 18 16 22 22 Si 1.86805 * 119.99711 * 353.91990 * 20 18 16 23 23 H 1.48487 * 109.47400 * 86.06726 * 22 20 18 24 24 H 1.48505 * 109.46992 * 206.06920 * 22 20 18 25 25 H 1.48507 * 109.47024 * 326.06550 * 22 20 18 26 26 C 1.47025 * 125.65051 * 179.97438 * 13 11 10 27 27 H 1.07994 * 120.00189 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99943 * 359.97438 * 1 2 3 29 29 H 1.08002 * 119.99943 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47299 * 15.00435 * 3 2 1 31 31 H 1.09000 * 109.47641 * 255.00061 * 3 2 1 32 32 H 1.08003 * 120.77683 * 359.97438 * 6 5 4 33 33 H 1.08001 * 120.27814 * 179.71399 * 7 6 5 34 34 H 1.07996 * 119.47187 * 180.02562 * 8 7 6 35 35 H 1.09000 * 110.36489 * 322.92964 * 14 13 11 36 36 H 1.09000 * 110.36902 * 85.14407 * 14 13 11 37 37 H 1.09000 * 111.00615 * 81.05881 * 15 14 13 38 38 H 1.09002 * 111.00563 * 204.92075 * 15 14 13 39 39 H 0.96701 * 113.99697 * 174.41832 * 17 16 15 40 40 H 0.96996 * 120.00438 * 180.02562 * 21 20 18 41 41 H 1.08998 * 109.87942 * 298.39875 * 26 13 11 42 42 H 1.09004 * 109.87810 * 59.56033 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9077 2.3431 1.0788 6 6 3.6624 3.4770 0.3068 7 6 4.4893 4.5739 0.4664 8 6 5.5270 4.5180 1.3860 9 7 5.7366 3.4397 2.1068 10 6 4.9695 2.3614 1.9892 11 6 5.2440 1.1707 2.8212 12 8 4.5444 0.1822 2.7172 13 7 6.2731 1.1794 3.6915 14 6 7.1966 2.3058 3.9188 15 6 8.4857 1.6549 4.4793 16 6 7.9028 0.5226 5.3657 17 8 7.5266 1.0276 6.6484 18 6 8.8917 -0.6056 5.5081 19 1 8.8733 -1.4310 4.8118 20 6 9.8202 -0.5841 6.5272 21 7 10.6035 -1.6217 6.7253 22 14 9.9653 0.9191 7.6268 23 1 8.9891 0.8137 8.7407 24 1 11.3412 0.9966 8.1801 25 1 9.6811 2.1419 6.8336 26 6 6.6565 0.0695 4.5763 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3856 2.1160 0.2660 31 1 2.4756 1.4868 -0.9926 32 1 2.8487 3.4969 -0.4031 33 1 4.3289 5.4666 -0.1199 34 1 6.1727 5.3745 1.5112 35 1 7.4076 2.8186 2.9804 36 1 6.7749 3.0017 4.6441 37 1 9.0981 1.2458 3.6757 38 1 9.0542 2.3664 5.0782 39 1 7.0788 0.3802 7.2101 40 1 11.2564 -1.6067 7.4425 41 1 5.8411 -0.1551 5.2638 42 1 6.8968 -0.8122 3.9820 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:11 Heat of formation + Delta-G solvation = -37.535852 kcal Electronic energy + Delta-G solvation = -26774.859786 eV Core-core repulsion = 22915.053384 eV Total energy + Delta-G solvation = -3859.806402 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.05755 -39.24903 -38.45741 -37.35808 -34.70878 -34.35811 -32.61074 -32.29782 -30.80224 -29.98111 -28.21984 -27.03335 -25.75680 -24.18339 -23.03921 -22.23292 -20.48771 -19.90536 -19.47705 -18.30776 -17.63321 -17.27694 -16.95891 -16.39583 -15.59066 -15.40558 -15.14498 -15.01370 -14.71955 -14.53229 -14.19669 -13.99010 -13.41451 -13.30812 -13.11357 -12.96758 -12.61893 -12.41666 -12.07483 -12.00890 -11.82529 -11.53856 -11.39881 -11.32119 -10.93548 -10.43379 -10.26239 -10.11533 -10.03598 -9.90043 -9.85194 -9.23866 -9.12562 -8.65227 -8.58064 -8.44740 -7.95162 -6.14219 -4.25499 0.55773 1.01587 1.73241 2.95885 3.00057 3.36883 3.49690 3.55508 3.71957 3.86379 4.18495 4.30165 4.42664 4.53406 4.53648 4.68379 4.74889 4.82510 4.97781 5.08087 5.09872 5.21325 5.31444 5.49946 5.57115 5.63165 5.70729 5.95104 5.98292 6.09861 6.18099 6.22019 6.27755 6.42430 6.60675 6.74970 6.86407 6.92646 7.02510 7.20702 7.51783 7.63351 8.06530 8.18376 8.60379 8.70636 8.87964 9.47207 10.94923 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019973 B = 0.003439 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.580014 B = 8141.066726 C = 9183.432238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.149 4.149 3 C 0.078 3.922 4 O -0.265 6.265 5 C 0.136 3.864 6 C -0.179 4.179 7 C -0.112 4.112 8 C 0.053 3.947 9 N -0.411 5.411 10 C 0.058 3.942 11 C 0.574 3.426 12 O -0.528 6.528 13 N -0.591 5.591 14 C 0.103 3.897 15 C -0.126 4.126 16 C 0.218 3.782 17 O -0.564 6.564 18 C -0.551 4.551 19 H 0.080 0.920 20 C 0.074 3.926 21 N -0.890 5.890 22 Si 0.945 3.055 23 H -0.291 1.291 24 H -0.325 1.325 25 H -0.266 1.266 26 C 0.093 3.907 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.124 0.876 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.165 0.835 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.371 0.629 40 H 0.266 0.734 41 H 0.059 0.941 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.327 12.921 -14.820 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.167 4.167 3 C 0.003 3.997 4 O -0.175 6.175 5 C 0.085 3.915 6 C -0.205 4.205 7 C -0.132 4.132 8 C -0.107 4.107 9 N -0.122 5.122 10 C -0.081 4.081 11 C 0.360 3.640 12 O -0.405 6.405 13 N -0.322 5.322 14 C -0.019 4.019 15 C -0.165 4.165 16 C 0.178 3.822 17 O -0.371 6.371 18 C -0.588 4.588 19 H 0.098 0.902 20 C -0.130 4.130 21 N -0.525 5.525 22 Si 0.780 3.220 23 H -0.219 1.219 24 H -0.257 1.257 25 H -0.192 1.192 26 C -0.029 4.029 27 H 0.127 0.873 28 H 0.116 0.884 29 H 0.142 0.858 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.182 0.818 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.219 0.781 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.681 12.553 -14.362 24.693 hybrid contribution -0.886 0.445 -0.028 0.992 sum -16.568 12.998 -14.390 25.505 Atomic orbital electron populations 1.23845 0.95320 1.02479 0.99497 1.22648 0.95596 0.97869 1.00558 1.21973 0.88153 0.97348 0.92232 1.86474 1.40721 1.33348 1.56960 1.19996 0.90862 0.86897 0.93748 1.21712 1.02971 0.93466 1.02348 1.22168 0.94656 0.98496 0.97876 1.22824 0.97453 0.96479 0.93907 1.68036 1.23941 0.98837 1.21428 1.20828 0.93792 0.95010 0.98506 1.17235 0.80764 0.85972 0.80016 1.90811 1.48523 1.33209 1.67922 1.48374 1.28668 1.17511 1.37685 1.22689 0.89373 0.88472 1.01373 1.23186 0.95799 0.98287 0.99184 1.20139 0.89923 0.92208 0.79976 1.86132 1.78449 1.44083 1.28463 1.21202 1.15546 1.06295 1.15802 0.90201 1.25104 0.94285 0.96654 0.96989 1.69967 1.21598 1.29607 1.31312 0.85793 0.73428 0.83081 0.79715 1.21850 1.25660 1.19175 1.22905 0.97949 0.89287 0.92727 0.87336 0.88415 0.85820 0.91468 0.90942 0.83876 0.84126 0.81797 0.88915 0.92044 0.89956 0.90011 0.78055 0.92447 0.92239 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 14.31 29.02 0.42 -0.89 16 2 C -0.15 -1.41 9.89 -36.03 -0.36 -1.77 16 3 C 0.08 0.75 5.17 36.00 0.19 0.93 16 4 O -0.27 -3.87 8.18 -40.58 -0.33 -4.20 16 5 C 0.14 1.89 6.71 -38.55 -0.26 1.63 16 6 C -0.18 -1.71 9.13 -39.15 -0.36 -2.06 16 7 C -0.11 -0.92 10.10 -39.37 -0.40 -1.31 16 8 C 0.05 0.54 11.17 -17.55 -0.20 0.35 16 9 N -0.41 -5.89 6.59 -9.71 -0.06 -5.96 16 10 C 0.06 0.95 6.73 -82.88 -0.56 0.39 16 11 C 0.57 11.50 7.83 -12.34 -0.10 11.40 16 12 O -0.53 -11.85 15.46 -16.63 -0.26 -12.10 16 13 N -0.59 -11.92 3.33 -171.63 -0.57 -12.50 16 14 C 0.10 1.91 5.93 -2.53 -0.01 1.89 16 15 C -0.13 -2.63 5.88 -24.58 -0.14 -2.78 16 16 C 0.22 4.99 0.68 -89.93 -0.06 4.92 16 17 O -0.56 -12.50 8.74 -35.23 -0.31 -12.81 16 18 C -0.55 -14.94 8.82 -34.44 -0.30 -15.24 16 19 H 0.08 2.37 7.81 -52.48 -0.41 1.96 16 20 C 0.07 2.09 5.46 -17.82 -0.10 1.99 16 21 N -0.89 -26.68 13.96 55.43 0.77 -25.91 16 22 Si 0.95 23.37 24.82 -169.99 -4.22 19.15 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.33 -8.25 7.11 56.52 0.40 -7.85 16 25 H -0.27 -6.38 5.19 56.52 0.29 -6.09 16 26 C 0.09 2.03 6.22 -3.06 -0.02 2.01 16 27 H 0.11 0.69 8.06 -52.49 -0.42 0.26 16 28 H 0.10 0.58 7.90 -52.49 -0.41 0.17 16 29 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.07 0.51 7.41 -51.93 -0.38 0.12 16 31 H 0.07 0.55 7.71 -51.93 -0.40 0.15 16 32 H 0.14 0.91 6.46 -52.48 -0.34 0.57 16 33 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 34 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.09 1.56 5.87 -51.93 -0.30 1.26 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.08 1.72 8.04 -51.93 -0.42 1.30 16 38 H 0.08 1.72 6.24 -51.93 -0.32 1.39 16 39 H 0.37 7.36 8.97 45.56 0.41 7.77 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.06 1.26 8.04 -51.93 -0.42 0.84 16 42 H 0.07 1.72 7.66 -51.93 -0.40 1.32 16 LS Contribution 345.32 15.07 5.20 5.20 Total: -1.00 -34.67 345.32 -6.79 -41.46 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.76 Total: 6.19 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -2.26 Total: 1.47 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.14 Total: -44.36 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.90 Total: -29.11 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -4.22 Total: 19.15 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.67 -6.79 -41.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.924 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds