Wall clock time and date at job start Tue Mar 31 2020 12:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50696 * 120.00260 * 2 1 4 4 O 1.42902 * 109.47146 * 134.99879 * 3 2 1 5 5 C 1.35643 * 117.00207 * 180.02562 * 4 3 2 6 6 C 1.39352 * 120.54288 * 0.22866 * 5 4 3 7 7 C 1.38291 * 118.44111 * 180.28273 * 6 5 4 8 8 C 1.38764 * 119.44966 * 359.73078 * 7 6 5 9 9 N 1.31380 * 121.06204 * 0.02562 * 8 7 6 10 10 C 1.32855 * 121.69800 * 359.97438 * 9 8 7 11 11 C 1.47832 * 119.78474 * 179.97438 * 10 9 8 12 12 O 1.21550 * 120.00030 * 179.97438 * 11 10 9 13 13 N 1.34776 * 119.99882 * 359.72419 * 11 10 9 14 14 C 1.47423 * 125.64895 * 0.29904 * 13 11 10 15 15 C 1.54912 * 104.83424 * 204.09228 * 14 13 11 16 16 C 1.55163 * 101.57793 * 322.98807 * 15 14 13 17 17 O 1.42899 * 110.72081 * 277.13708 * 16 15 14 18 18 C 1.50699 * 110.71740 * 154.04178 * 16 15 14 19 19 H 1.08006 * 120.00055 * 268.66076 * 18 16 15 20 20 C 1.37878 * 120.00244 * 88.65722 * 18 16 15 21 21 N 1.31514 * 120.00551 * 173.91440 * 20 18 16 22 22 Si 1.86805 * 119.99711 * 353.91990 * 20 18 16 23 23 H 1.48487 * 109.47400 * 86.06726 * 22 20 18 24 24 H 1.48505 * 109.46992 * 206.06920 * 22 20 18 25 25 H 1.48507 * 109.47024 * 326.06550 * 22 20 18 26 26 C 1.47025 * 125.65051 * 179.97438 * 13 11 10 27 27 H 1.07994 * 120.00189 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99943 * 359.97438 * 1 2 3 29 29 H 1.08002 * 119.99943 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47299 * 15.00435 * 3 2 1 31 31 H 1.09000 * 109.47641 * 255.00061 * 3 2 1 32 32 H 1.08003 * 120.77683 * 359.97438 * 6 5 4 33 33 H 1.08001 * 120.27814 * 179.71399 * 7 6 5 34 34 H 1.07996 * 119.47187 * 180.02562 * 8 7 6 35 35 H 1.09000 * 110.36489 * 322.92964 * 14 13 11 36 36 H 1.09000 * 110.36902 * 85.14407 * 14 13 11 37 37 H 1.09000 * 111.00615 * 81.05881 * 15 14 13 38 38 H 1.09002 * 111.00563 * 204.92075 * 15 14 13 39 39 H 0.96701 * 113.99697 * 174.41832 * 17 16 15 40 40 H 0.96996 * 120.00438 * 180.02562 * 21 20 18 41 41 H 1.08998 * 109.87942 * 298.39875 * 26 13 11 42 42 H 1.09004 * 109.87810 * 59.56033 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9077 2.3431 1.0788 6 6 3.6624 3.4770 0.3068 7 6 4.4893 4.5739 0.4664 8 6 5.5270 4.5180 1.3860 9 7 5.7366 3.4397 2.1068 10 6 4.9695 2.3614 1.9892 11 6 5.2440 1.1707 2.8212 12 8 4.5444 0.1822 2.7172 13 7 6.2731 1.1794 3.6915 14 6 7.1966 2.3058 3.9188 15 6 8.4857 1.6549 4.4793 16 6 7.9028 0.5226 5.3657 17 8 7.5266 1.0276 6.6484 18 6 8.8917 -0.6056 5.5081 19 1 8.8733 -1.4310 4.8118 20 6 9.8202 -0.5841 6.5272 21 7 10.6035 -1.6217 6.7253 22 14 9.9653 0.9191 7.6268 23 1 8.9891 0.8137 8.7407 24 1 11.3412 0.9966 8.1801 25 1 9.6811 2.1419 6.8336 26 6 6.6565 0.0695 4.5763 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3856 2.1160 0.2660 31 1 2.4756 1.4868 -0.9926 32 1 2.8487 3.4969 -0.4031 33 1 4.3289 5.4666 -0.1199 34 1 6.1727 5.3745 1.5112 35 1 7.4076 2.8186 2.9804 36 1 6.7749 3.0017 4.6441 37 1 9.0981 1.2458 3.6757 38 1 9.0542 2.3664 5.0782 39 1 7.0788 0.3802 7.2101 40 1 11.2564 -1.6067 7.4425 41 1 5.8411 -0.1551 5.2638 42 1 6.8968 -0.8122 3.9820 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:10 Heat of formation + Delta-G solvation = -63.016456 kcal Electronic energy + Delta-G solvation = -26775.964708 eV Core-core repulsion = 22915.053384 eV Total energy + Delta-G solvation = -3860.911324 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.04848 -40.71049 -39.38090 -39.00479 -36.35805 -35.09101 -34.46536 -33.50055 -31.96501 -31.40023 -29.94773 -27.80112 -27.42619 -25.49555 -23.86781 -23.74980 -21.70962 -21.23833 -20.75745 -19.56294 -19.15829 -18.56570 -17.99152 -17.26655 -17.14759 -16.79863 -16.67922 -16.53743 -15.81996 -15.77270 -15.26929 -15.07145 -14.97783 -14.54891 -14.39576 -14.13522 -14.02812 -13.91106 -13.70896 -13.25886 -13.12140 -13.01161 -12.73326 -12.56419 -12.29685 -12.20536 -11.99865 -11.82782 -11.35848 -11.16606 -10.82285 -10.66100 -10.55535 -10.40670 -10.29579 -9.74092 -9.38813 -8.34766 -6.49548 -0.36007 0.23217 1.07488 1.51845 1.53667 1.73201 1.75219 1.94464 2.25663 2.45828 2.81780 2.96953 3.13547 3.49132 3.55508 3.65714 3.87399 3.91941 3.98797 4.05612 4.06151 4.17288 4.28729 4.35962 4.43118 4.47529 4.49509 4.76187 4.83446 4.87619 4.92124 5.01812 5.09678 5.21481 5.26082 5.41962 5.48906 5.53224 5.58110 5.64369 6.03724 6.22324 6.52786 6.56461 6.75438 6.92486 7.13695 7.28315 8.78640 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019973 B = 0.003439 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.580014 B = 8141.066726 C = 9183.432238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.184 4.184 3 C 0.074 3.926 4 O -0.305 6.305 5 C 0.125 3.875 6 C -0.170 4.170 7 C -0.083 4.083 8 C 0.053 3.947 9 N -0.436 5.436 10 C 0.009 3.991 11 C 0.567 3.433 12 O -0.568 6.568 13 N -0.599 5.599 14 C 0.120 3.880 15 C -0.124 4.124 16 C 0.221 3.779 17 O -0.560 6.560 18 C -0.552 4.552 19 H 0.036 0.964 20 C 0.026 3.974 21 N -0.938 5.938 22 Si 1.007 2.993 23 H -0.280 1.280 24 H -0.333 1.333 25 H -0.249 1.249 26 C 0.101 3.899 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.181 0.819 33 H 0.193 0.807 34 H 0.200 0.800 35 H 0.114 0.886 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.381 0.619 40 H 0.269 0.731 41 H 0.059 0.941 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.272 17.681 -16.422 30.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.202 4.202 3 C 0.000 4.000 4 O -0.216 6.216 5 C 0.074 3.926 6 C -0.196 4.196 7 C -0.102 4.102 8 C -0.109 4.109 9 N -0.148 5.148 10 C -0.127 4.127 11 C 0.356 3.644 12 O -0.448 6.448 13 N -0.330 5.330 14 C -0.002 4.002 15 C -0.163 4.163 16 C 0.180 3.820 17 O -0.369 6.369 18 C -0.590 4.590 19 H 0.055 0.945 20 C -0.174 4.174 21 N -0.575 5.575 22 Si 0.839 3.161 23 H -0.207 1.207 24 H -0.265 1.265 25 H -0.174 1.174 26 C -0.023 4.023 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.198 0.802 33 H 0.210 0.790 34 H 0.217 0.783 35 H 0.132 0.868 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.231 0.769 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.655 17.306 -15.974 29.434 hybrid contribution -0.407 -1.030 0.305 1.148 sum -18.062 16.277 -15.669 28.926 Atomic orbital electron populations 1.24097 0.94538 1.03958 0.96392 1.22666 0.96508 0.97492 1.03524 1.22250 0.87562 0.97884 0.92326 1.86427 1.42018 1.34604 1.58540 1.20190 0.90282 0.88108 0.93988 1.22167 1.03872 0.91955 1.01580 1.22756 0.92122 0.99296 0.96040 1.23557 0.98330 0.95891 0.93161 1.67811 1.24426 0.99422 1.23110 1.20217 0.96933 0.94727 1.00787 1.18001 0.79686 0.87086 0.79623 1.90761 1.49753 1.35215 1.69079 1.48436 1.29501 1.17209 1.37890 1.22647 0.87435 0.87673 1.02425 1.23120 0.97002 0.97527 0.98608 1.19940 0.89356 0.91855 0.80816 1.86085 1.78445 1.44242 1.28103 1.21379 1.16538 1.06428 1.14641 0.94527 1.25908 0.93828 0.99201 0.98441 1.70087 1.22964 1.31856 1.32620 0.84790 0.73083 0.80076 0.78182 1.20713 1.26452 1.17440 1.22576 0.97580 0.89378 0.92732 0.86514 0.86193 0.88137 0.89010 0.88991 0.80217 0.79009 0.78328 0.86836 0.91314 0.90682 0.89418 0.76900 0.92265 0.92244 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 14.31 67.78 0.97 -1.07 16 2 C -0.18 -3.47 9.89 25.65 0.25 -3.22 16 3 C 0.07 1.30 5.17 71.23 0.37 1.67 16 4 O -0.30 -8.94 8.18 -68.59 -0.56 -9.50 16 5 C 0.13 3.31 6.71 22.94 0.15 3.47 16 6 C -0.17 -2.49 9.13 22.55 0.21 -2.29 16 7 C -0.08 -0.86 10.10 22.41 0.23 -0.64 16 8 C 0.05 0.83 11.17 84.89 0.95 1.78 16 9 N -0.44 -11.56 6.59 -184.63 -1.22 -12.77 16 10 C 0.01 0.29 6.73 41.93 0.28 0.58 16 11 C 0.57 23.61 7.83 86.78 0.68 24.29 16 12 O -0.57 -27.18 15.46 17.11 0.26 -26.92 16 13 N -0.60 -24.83 3.33 -815.19 -2.71 -27.54 16 14 C 0.12 4.33 5.93 86.86 0.52 4.84 16 15 C -0.12 -5.13 5.88 31.99 0.19 -4.95 16 16 C 0.22 10.28 0.68 -10.35 -0.01 10.28 16 17 O -0.56 -24.30 8.74 -148.98 -1.30 -25.60 16 18 C -0.55 -31.23 8.82 25.60 0.23 -31.01 16 19 H 0.04 2.33 7.81 -2.91 -0.02 2.31 16 20 C 0.03 1.49 5.46 84.65 0.46 1.96 16 21 N -0.94 -58.25 13.96 21.45 0.30 -57.95 16 22 Si 1.01 48.07 24.82 68.60 1.70 49.78 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.33 -16.24 7.11 99.48 0.71 -15.54 16 25 H -0.25 -11.16 5.19 99.48 0.52 -10.65 16 26 C 0.10 4.59 6.22 86.73 0.54 5.13 16 27 H 0.12 1.31 8.06 -2.91 -0.02 1.29 16 28 H 0.12 1.05 7.90 -2.91 -0.02 1.03 16 29 H 0.10 2.29 8.06 -2.91 -0.02 2.26 16 30 H 0.09 1.10 7.41 -2.39 -0.02 1.08 16 31 H 0.09 1.17 7.71 -2.39 -0.02 1.15 16 32 H 0.18 1.24 6.46 -2.91 -0.02 1.22 16 33 H 0.19 0.12 8.06 -2.91 -0.02 0.10 16 34 H 0.20 1.64 8.06 -2.91 -0.02 1.61 16 35 H 0.11 3.66 5.87 -2.39 -0.01 3.65 16 36 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.07 3.17 8.04 -2.39 -0.02 3.15 16 38 H 0.09 3.51 6.24 -2.39 -0.01 3.50 16 39 H 0.38 14.86 8.97 -74.06 -0.66 14.20 16 40 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 41 H 0.06 2.65 8.04 -2.39 -0.02 2.63 16 42 H 0.05 2.35 7.66 -2.39 -0.02 2.34 16 Total: -1.00 -81.90 345.32 2.69 -79.21 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.20 Total: 20.47 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 6.01 Total: 10.83 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -3.63 Total: -98.26 kcal Atomic # 8 Polarization: -60.42 SS G_CDS: -1.60 Total: -62.02 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 1.70 Total: 49.78 kcal Total: -81.90 2.69 -79.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.196 kcal (2) G-P(sol) polarization free energy of solvation -81.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds