Wall clock time and date at job start Tue Mar 31 2020 13:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21313 * 120.00165 * 2 1 4 4 C 1.46658 * 120.00146 * 179.97438 * 2 1 3 5 5 C 1.40067 * 120.23765 * 0.32309 * 4 2 1 6 6 C 1.37621 * 119.89348 * 180.29287 * 5 4 2 7 7 C 1.38698 * 120.39661 * 359.68033 * 6 5 4 8 8 N 1.48020 * 119.75374 * 180.02562 * 7 6 5 9 9 O 1.21800 * 120.00317 * 179.97438 * 8 7 6 10 10 O 1.21806 * 120.00041 * 359.97438 * 8 7 6 11 11 C 1.37938 * 120.49549 * 359.97438 * 7 6 5 12 12 C 1.38957 * 120.08501 * 0.02702 * 11 7 6 13 13 N 1.38697 * 120.19899 * 180.02562 * 12 11 7 14 14 C 1.46849 * 110.99825 * 63.94967 * 13 12 11 15 15 C 1.53035 * 109.52197 * 174.16622 * 14 13 12 16 16 C 1.53121 * 109.28046 * 59.17940 * 15 14 13 17 17 C 1.53123 * 109.16129 * 302.34534 * 16 15 14 18 18 H 1.08993 * 109.50239 * 297.67374 * 17 16 15 19 19 C 1.50701 * 109.50173 * 177.59231 * 17 16 15 20 20 H 1.08002 * 119.99761 * 239.99653 * 19 17 16 21 21 C 1.37871 * 119.99694 * 60.28216 * 19 17 16 22 22 N 1.31514 * 120.00482 * 359.71466 * 21 19 17 23 23 Si 1.86801 * 119.99746 * 179.72062 * 21 19 17 24 24 H 1.48494 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47301 * 119.99669 * 23 21 19 26 26 H 1.48498 * 109.47430 * 239.99516 * 23 21 19 27 27 C 1.46847 * 110.99516 * 299.74519 * 13 12 11 28 28 H 1.09005 * 109.46808 * 270.00300 * 1 2 3 29 29 H 1.08996 * 109.47415 * 29.99716 * 1 2 3 30 30 H 1.08996 * 109.47574 * 150.00247 * 1 2 3 31 31 H 1.07994 * 120.05129 * 359.96842 * 5 4 2 32 32 H 1.07999 * 119.80092 * 179.69602 * 6 5 4 33 33 H 1.07991 * 119.95769 * 180.02562 * 11 7 6 34 34 H 1.08994 * 109.46074 * 54.15096 * 14 13 12 35 35 H 1.09004 * 109.46119 * 294.17977 * 14 13 12 36 36 H 1.08999 * 109.50518 * 299.23822 * 15 14 13 37 37 H 1.08997 * 109.53707 * 179.14216 * 15 14 13 38 38 H 1.08994 * 109.52385 * 182.44373 * 16 15 14 39 39 H 1.08998 * 109.52294 * 62.25024 * 16 15 14 40 40 H 0.96995 * 120.00207 * 179.97438 * 22 21 19 41 41 H 1.09002 * 109.46466 * 65.82234 * 27 13 12 42 42 H 1.08998 * 109.46337 * 305.85132 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2403 -1.2701 0.0006 5 6 1.5450 -2.4860 -0.0057 6 6 2.2403 -3.6737 0.0010 7 6 3.6272 -3.6749 0.0072 8 7 4.3606 -4.9606 0.0138 9 8 5.5786 -4.9671 0.0188 10 8 3.7461 -6.0123 0.0142 11 6 4.3283 -2.4870 0.0063 12 6 3.6469 -1.2760 -0.0004 13 7 4.3494 -0.0801 -0.0018 14 6 5.1397 0.0644 -1.2311 15 6 5.7837 1.4522 -1.2648 16 6 6.6810 1.6232 -0.0359 17 6 5.8438 1.4200 1.2299 18 1 5.0667 2.1826 1.2785 19 6 6.7315 1.5281 2.4430 20 1 6.8234 0.6925 3.1210 21 6 7.4216 2.6957 2.6902 22 7 7.3096 3.7133 1.8646 23 14 8.5158 2.8325 4.1980 24 1 8.4695 1.5590 4.9603 25 1 9.9124 3.1051 3.7731 26 1 8.0350 3.9423 5.0596 27 6 5.1980 0.0330 1.1913 28 1 -0.3633 0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 0.4651 -2.4915 -0.0105 32 1 1.7026 -4.6103 0.0011 33 1 5.4081 -2.4981 0.0108 34 1 4.4889 -0.0551 -2.0973 35 1 5.9184 -0.6980 -1.2540 36 1 5.0052 2.2150 -1.2558 37 1 6.3826 1.5542 -2.1698 38 1 7.1078 2.6261 -0.0332 39 1 7.4827 0.8852 -0.0648 40 1 7.7949 4.5349 2.0388 41 1 5.9765 -0.7292 1.1570 42 1 4.5897 -0.1093 2.0845 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596325213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:07 Heat of formation + Delta-G solvation = -17.074517 kcal Electronic energy + Delta-G solvation = -27191.623579 eV Core-core repulsion = 23332.704447 eV Total energy + Delta-G solvation = -3858.919132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.38565 -41.80437 -39.81746 -38.96928 -37.77567 -35.85108 -33.90907 -33.70451 -31.86131 -30.73761 -30.45600 -27.90623 -27.04916 -25.54437 -24.32939 -23.40091 -22.83044 -21.27016 -20.46942 -20.26506 -19.77037 -18.71962 -18.48916 -17.76488 -17.20298 -17.05793 -16.51569 -16.18342 -15.68225 -15.60061 -15.33688 -15.22567 -14.57561 -14.52509 -14.43071 -14.25995 -13.82391 -13.57220 -13.14134 -12.93036 -12.89117 -12.83110 -12.75715 -12.71626 -12.59546 -12.42485 -12.38169 -11.97299 -11.89114 -11.52282 -11.07618 -10.83809 -10.75870 -10.67293 -10.46484 -10.21837 -9.46121 -8.13493 -6.28469 -1.55422 -0.26130 -0.08312 0.22574 1.29555 1.36628 1.38254 1.49564 2.28027 2.37004 2.62001 2.95386 3.13720 3.26022 3.42854 3.63693 3.88831 3.98947 4.03501 4.09888 4.17970 4.33244 4.39211 4.48272 4.51156 4.57310 4.68939 4.71248 4.77151 4.80349 4.86527 4.96303 5.04067 5.05325 5.26821 5.27467 5.32695 5.42205 5.56932 5.74904 5.96806 6.08706 6.23982 6.32728 6.39167 6.71108 6.82692 7.39790 8.91613 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012326 B = 0.004334 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.107948 B = 6458.853212 C = 7675.074386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.371 3.629 3 O -0.448 6.448 4 C -0.108 4.108 5 C -0.041 4.041 6 C -0.061 4.061 7 C -0.022 4.022 8 N 0.026 4.974 9 O -0.220 6.220 10 O -0.124 6.124 11 C -0.112 4.112 12 C 0.133 3.867 13 N -0.495 5.495 14 C 0.073 3.927 15 C -0.106 4.106 16 C -0.104 4.104 17 C 0.059 3.941 18 H -0.004 1.004 19 C -0.539 4.539 20 H 0.049 0.951 21 C 0.017 3.983 22 N -0.913 5.913 23 Si 0.955 3.045 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.279 1.279 27 C 0.090 3.910 28 H 0.115 0.885 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.217 0.783 32 H 0.194 0.806 33 H 0.134 0.866 34 H 0.083 0.917 35 H 0.035 0.965 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.262 0.738 41 H 0.023 0.977 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.693 -13.767 -7.048 23.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.247 3.753 3 O -0.321 6.321 4 C -0.111 4.111 5 C -0.059 4.059 6 C -0.079 4.079 7 C -0.105 4.105 8 N 0.543 4.457 9 O -0.422 6.422 10 O -0.352 6.352 11 C -0.134 4.134 12 C 0.037 3.963 13 N -0.215 5.215 14 C -0.052 4.052 15 C -0.144 4.144 16 C -0.142 4.142 17 C 0.040 3.960 18 H 0.015 0.985 19 C -0.577 4.577 20 H 0.067 0.933 21 C -0.182 4.182 22 N -0.552 5.552 23 Si 0.780 3.220 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.204 1.204 27 C -0.035 4.035 28 H 0.133 0.867 29 H 0.106 0.894 30 H 0.143 0.857 31 H 0.233 0.767 32 H 0.211 0.789 33 H 0.152 0.848 34 H 0.102 0.898 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.041 0.959 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.845 -11.918 -7.071 22.594 hybrid contribution 2.268 -0.488 0.928 2.499 sum -15.577 -12.406 -6.143 20.839 Atomic orbital electron populations 1.22308 0.89032 1.06809 1.06431 1.23075 0.93517 0.86472 0.72260 1.90762 1.72929 1.34852 1.33527 1.21558 0.91986 0.98098 0.99424 1.22012 1.03246 0.87134 0.93516 1.21469 0.88906 1.02867 0.94707 1.21421 0.93848 0.81706 1.13563 1.43981 1.01242 1.03444 0.97061 1.94610 0.96313 1.94565 1.56667 1.94458 1.69210 1.20900 1.50649 1.21675 1.02183 0.91370 0.98169 1.19233 0.93666 0.87573 0.95835 1.59411 1.29489 1.29040 1.03589 1.22101 0.95028 0.97526 0.90592 1.21542 0.98525 0.95849 0.98492 1.21470 0.97047 1.01330 0.94334 1.18514 0.93184 0.90594 0.93660 0.98535 1.21471 1.27644 0.99430 1.09191 0.93263 1.25693 0.97924 0.95318 0.99241 1.70037 1.43139 1.04205 1.37816 0.85558 0.78650 0.78098 0.79658 1.19373 1.20352 1.20448 1.22061 0.92851 0.98860 0.89758 0.86714 0.89410 0.85674 0.76666 0.78918 0.84833 0.89820 0.94700 0.93154 0.90553 0.91974 0.95494 0.92921 0.95882 0.93160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 9.76 71.23 0.69 -1.12 16 2 C 0.37 8.32 7.21 27.88 0.20 8.52 16 3 O -0.45 -15.79 15.78 -3.13 -0.05 -15.84 16 4 C -0.11 -2.28 5.89 -20.04 -0.12 -2.40 16 5 C -0.04 -0.42 9.36 22.57 0.21 -0.21 16 6 C -0.06 -0.82 9.52 22.23 0.21 -0.61 16 7 C -0.02 -0.51 6.85 36.41 0.25 -0.26 16 8 N 0.03 0.71 4.45 -46.37 -0.21 0.50 16 9 O -0.22 -7.25 18.42 18.89 0.35 -6.90 16 10 O -0.12 -3.10 18.43 18.88 0.35 -2.76 16 11 C -0.11 -3.17 8.17 22.37 0.18 -2.99 16 12 C 0.13 3.92 4.67 38.82 0.18 4.10 16 13 N -0.49 -18.38 2.56 -694.54 -1.77 -20.15 16 14 C 0.07 2.55 5.16 86.32 0.45 3.00 16 15 C -0.11 -4.24 6.09 30.65 0.19 -4.05 16 16 C -0.10 -5.10 5.03 30.68 0.15 -4.95 16 17 C 0.06 3.13 2.26 -11.48 -0.03 3.10 16 18 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 19 C -0.54 -30.74 8.56 25.60 0.22 -30.52 16 20 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 21 C 0.02 0.99 5.31 84.65 0.45 1.44 16 22 N -0.91 -53.96 11.36 21.45 0.24 -53.72 16 23 Si 0.95 44.65 29.54 68.60 2.03 46.67 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 C 0.09 3.99 4.33 86.33 0.37 4.36 16 28 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.12 0.10 6.45 -2.39 -0.02 0.08 16 31 H 0.22 -0.24 6.35 -2.91 -0.02 -0.26 16 32 H 0.19 1.31 7.59 -2.91 -0.02 1.29 16 33 H 0.13 4.30 6.64 -2.92 -0.02 4.28 16 34 H 0.08 2.53 8.10 -2.39 -0.02 2.51 16 35 H 0.03 1.19 7.52 -2.38 -0.02 1.17 16 36 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.06 3.45 6.16 -2.39 -0.01 3.43 16 39 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 41 H 0.02 1.02 7.33 -2.39 -0.02 1.00 16 42 H 0.05 2.26 8.10 -2.39 -0.02 2.24 16 Total: -1.00 -76.08 349.16 5.60 -70.48 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: 1.05 Total: 4.30 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 3.62 Total: -22.59 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -1.74 Total: -73.37 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: 0.65 Total: -25.49 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -76.08 5.60 -70.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596325213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.406 kcal (2) G-P(sol) polarization free energy of solvation -76.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds