Wall clock time and date at job start Tue Mar 31 2020 13:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21313 * 119.99758 * 2 1 4 4 C 1.46654 * 119.99760 * 179.97438 * 2 1 3 5 5 C 1.40060 * 120.24477 * 359.97438 * 4 2 1 6 6 C 1.37618 * 119.89913 * 180.02562 * 5 4 2 7 7 C 1.38699 * 120.39557 * 0.02562 * 6 5 4 8 8 N 1.48016 * 119.75314 * 180.02562 * 7 6 5 9 9 O 1.21801 * 120.00149 * 0.02562 * 8 7 6 10 10 O 1.21803 * 120.00158 * 179.97438 * 8 7 6 11 11 C 1.37936 * 120.49211 * 359.72462 * 7 6 5 12 12 C 1.38955 * 120.08639 * 0.55126 * 11 7 6 13 13 N 1.38700 * 120.19457 * 179.72087 * 12 11 7 14 14 C 1.46845 * 111.00411 * 295.52033 * 13 12 11 15 15 C 1.53034 * 109.52676 * 185.84161 * 14 13 12 16 16 C 1.53126 * 109.27454 * 300.81918 * 15 14 13 17 17 C 1.53119 * 109.16048 * 57.65518 * 16 15 14 18 18 H 1.09004 * 109.50364 * 62.32521 * 17 16 15 19 19 C 1.50705 * 109.50316 * 182.40389 * 17 16 15 20 20 H 1.07990 * 119.99883 * 119.99811 * 19 17 16 21 21 C 1.37878 * 119.99667 * 300.00057 * 19 17 16 22 22 N 1.31513 * 120.00258 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 119.99678 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47223 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47028 * 119.99847 * 23 21 19 26 26 H 1.48503 * 109.47098 * 239.99908 * 23 21 19 27 27 C 1.46850 * 111.00001 * 59.73123 * 13 12 11 28 28 H 1.09002 * 109.47083 * 240.00418 * 1 2 3 29 29 H 1.09002 * 109.47434 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47092 * 120.00471 * 1 2 3 31 31 H 1.08002 * 120.04925 * 0.02562 * 5 4 2 32 32 H 1.08001 * 119.80143 * 179.97438 * 6 5 4 33 33 H 1.08005 * 119.95468 * 180.27891 * 11 7 6 34 34 H 1.08995 * 109.46315 * 65.82012 * 14 13 12 35 35 H 1.09005 * 109.45975 * 305.85526 * 14 13 12 36 36 H 1.08997 * 109.50792 * 180.88024 * 15 14 13 37 37 H 1.09006 * 109.50471 * 60.75677 * 15 14 13 38 38 H 1.08999 * 109.52028 * 177.55723 * 16 15 14 39 39 H 1.09000 * 109.52072 * 297.68377 * 16 15 14 40 40 H 0.96999 * 120.00249 * 180.02562 * 22 21 19 41 41 H 1.09005 * 109.46186 * 54.14030 * 27 13 12 42 42 H 1.09004 * 109.45360 * 294.17185 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2402 -1.2701 0.0006 5 6 1.5450 -2.4860 0.0017 6 6 2.2403 -3.6737 0.0027 7 6 3.6272 -3.6749 0.0033 8 7 4.3606 -4.9606 0.0038 9 8 3.7461 -6.0123 0.0033 10 8 5.5786 -4.9670 0.0038 11 6 4.3282 -2.4870 -0.0030 12 6 3.6468 -1.2760 0.0017 13 7 4.3495 -0.0802 0.0013 14 6 5.1299 0.0722 1.2358 15 6 5.7736 1.4602 1.2661 16 6 6.6807 1.6234 0.0433 17 6 5.8536 1.4122 -1.2279 18 1 5.0768 2.1746 -1.2875 19 6 6.7509 1.5128 -2.4345 20 1 6.8483 0.6730 -3.1064 21 6 7.4475 2.6770 -2.6805 22 7 7.3285 3.6998 -1.8624 23 14 8.5602 2.8013 -4.1757 24 1 8.5203 1.5229 -4.9302 25 1 8.0931 3.9073 -5.0497 26 1 9.9524 3.0725 -3.7355 27 6 5.2075 0.0256 -1.1857 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 0.4650 -2.4915 0.0017 32 1 1.7026 -4.6103 0.0040 33 1 5.4082 -2.4981 -0.0071 34 1 5.9083 -0.6900 1.2698 35 1 4.4722 -0.0420 2.0976 36 1 6.3654 1.5673 2.1751 37 1 4.9951 2.2230 1.2460 38 1 7.1075 2.6264 0.0377 39 1 7.4828 0.8864 0.0838 40 1 7.8183 4.5190 -2.0356 41 1 4.6063 -0.1224 -2.0828 42 1 5.9857 -0.7364 -1.1403 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596325214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:11 Heat of formation + Delta-G solvation = -1.381078 kcal Electronic energy + Delta-G solvation = -27189.832914 eV Core-core repulsion = 23331.594301 eV Total energy + Delta-G solvation = -3858.238614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.30587 -40.69718 -38.61170 -37.76143 -36.66108 -34.13635 -32.75065 -32.17127 -30.06687 -29.96190 -29.25954 -26.90640 -25.05760 -24.17471 -23.35121 -21.81838 -21.43745 -20.30164 -19.16852 -18.94502 -18.50664 -17.63268 -16.86737 -16.57011 -16.13360 -15.58109 -15.15675 -14.76088 -14.55417 -14.35176 -14.23976 -13.74993 -13.58907 -13.17971 -12.70428 -12.66983 -12.47313 -12.44146 -12.20531 -12.06256 -11.76600 -11.64632 -11.34459 -11.23404 -11.00871 -10.84370 -10.73729 -10.22889 -9.98982 -9.80966 -9.76408 -9.60131 -9.34020 -9.15620 -8.76658 -8.37285 -8.05993 -6.02089 -4.08869 -0.53413 0.67642 0.93474 1.24730 2.21594 3.18505 3.27720 3.36017 3.39514 3.79751 3.82006 4.11644 4.35582 4.42390 4.54994 4.84949 4.91320 5.03623 5.12230 5.18443 5.28277 5.40878 5.43540 5.47253 5.52121 5.66312 5.81471 5.91370 5.93812 6.09181 6.18437 6.26908 6.33090 6.56896 6.61526 6.81916 7.04588 7.27298 7.36316 7.51868 7.55768 7.63247 7.71204 8.01070 8.10256 8.39163 8.94670 9.55910 11.03910 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012316 B = 0.004338 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.003286 B = 6453.436806 C = 7680.774058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.371 3.629 3 O -0.380 6.380 4 C -0.104 4.104 5 C -0.074 4.074 6 C -0.083 4.083 7 C -0.012 4.012 8 N 0.025 4.975 9 O -0.160 6.160 10 O -0.157 6.157 11 C -0.101 4.101 12 C 0.167 3.833 13 N -0.490 5.490 14 C 0.069 3.931 15 C -0.115 4.115 16 C -0.112 4.112 17 C 0.059 3.941 18 H 0.040 0.960 19 C -0.517 4.517 20 H 0.054 0.946 21 C 0.065 3.935 22 N -0.886 5.886 23 Si 0.890 3.110 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.071 3.929 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.032 0.968 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.032 0.968 40 H 0.260 0.740 41 H 0.061 0.939 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.268 -11.271 6.754 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.242 3.758 3 O -0.249 6.249 4 C -0.107 4.107 5 C -0.093 4.093 6 C -0.102 4.102 7 C -0.095 4.095 8 N 0.545 4.455 9 O -0.376 6.376 10 O -0.373 6.373 11 C -0.122 4.122 12 C 0.070 3.930 13 N -0.211 5.211 14 C -0.056 4.056 15 C -0.153 4.153 16 C -0.150 4.150 17 C 0.040 3.960 18 H 0.058 0.942 19 C -0.556 4.556 20 H 0.072 0.928 21 C -0.137 4.137 22 N -0.524 5.524 23 Si 0.718 3.282 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.053 4.053 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.174 0.826 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -14.527 -9.448 6.760 18.601 hybrid contribution 1.427 -1.165 -0.817 2.015 sum -13.101 -10.613 5.943 17.877 Atomic orbital electron populations 1.22271 0.93760 1.05416 1.04046 1.22149 0.91120 0.87510 0.74984 1.90757 1.71295 1.32780 1.30062 1.21236 0.93277 0.96163 0.99992 1.21377 1.00867 0.89722 0.97329 1.20895 0.90719 1.00765 0.97844 1.21255 0.92675 0.83221 1.12384 1.43747 1.01353 1.02881 0.97526 1.94508 1.69576 1.20314 1.53226 1.94581 0.95402 1.94218 1.53100 1.21979 1.03086 0.90650 0.96512 1.19184 0.92430 0.88881 0.92508 1.59599 1.30318 1.26357 1.04845 1.22143 0.94593 0.99220 0.89667 1.21672 0.99424 0.94675 0.99525 1.21687 0.96732 1.03652 0.92932 1.18660 0.94360 0.89515 0.93486 0.94170 1.21124 1.26423 0.99269 1.08759 0.92791 1.24911 0.96676 0.95652 0.96415 1.69894 1.42248 1.03722 1.36583 0.86564 0.80526 0.78038 0.83030 1.19851 1.20995 1.21000 1.22525 0.92715 1.01682 0.88372 0.89224 0.89408 0.89131 0.82648 0.82660 0.82582 0.95019 0.92194 0.93008 0.91458 0.88733 0.94955 0.93017 0.92053 0.95383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.40 8.93 36.00 0.32 -1.08 16 2 C 0.37 4.54 7.21 -30.91 -0.22 4.31 16 3 O -0.38 -6.57 15.76 5.53 0.09 -6.48 16 4 C -0.10 -1.24 5.89 -104.90 -0.62 -1.86 16 5 C -0.07 -0.60 9.46 -39.12 -0.37 -0.97 16 6 C -0.08 -0.78 9.52 -39.64 -0.38 -1.16 16 7 C -0.01 -0.15 6.85 -79.89 -0.55 -0.70 16 8 N 0.03 0.37 4.45 33.99 0.15 0.52 16 9 O -0.16 -2.26 18.43 -29.46 -0.54 -2.80 16 10 O -0.16 -2.49 18.42 -29.46 -0.54 -3.03 16 11 C -0.10 -1.42 8.17 -39.43 -0.32 -1.74 16 12 C 0.17 2.47 4.67 -83.57 -0.39 2.08 16 13 N -0.49 -8.74 2.56 -170.88 -0.44 -9.18 16 14 C 0.07 1.18 5.16 -3.84 -0.02 1.16 16 15 C -0.12 -2.19 6.09 -26.65 -0.16 -2.36 16 16 C -0.11 -2.58 5.02 -26.60 -0.13 -2.71 16 17 C 0.06 1.44 2.26 -91.69 -0.21 1.23 16 18 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 19 C -0.52 -13.98 8.56 -34.44 -0.29 -14.27 16 20 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 21 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 22 N -0.89 -25.00 11.35 55.43 0.63 -24.37 16 23 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.07 1.48 4.33 -3.83 -0.02 1.46 16 28 H 0.09 0.41 8.08 -51.93 -0.42 -0.01 16 29 H 0.09 0.67 8.12 -51.93 -0.42 0.24 16 30 H 0.09 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.16 0.63 7.05 -52.49 -0.37 0.26 16 32 H 0.16 1.11 7.59 -52.49 -0.40 0.71 16 33 H 0.16 2.32 6.64 -52.48 -0.35 1.98 16 34 H 0.03 0.52 7.55 -51.93 -0.39 0.13 16 35 H 0.06 0.92 8.10 -51.93 -0.42 0.49 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.09 2.45 6.15 -51.93 -0.32 2.13 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 42 H 0.03 0.57 7.30 -51.93 -0.38 0.19 16 LS Contribution 350.67 15.07 5.28 5.28 Total: -1.00 -30.97 350.67 -9.39 -40.36 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.54 Total: -1.50 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -3.46 Total: -14.92 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.34 Total: -33.03 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -1.00 Total: -12.31 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.97 -9.39 -40.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596325214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.980 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds