Wall clock time and date at job start Tue Mar 31 2020 13:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21313 * 119.99758 * 2 1 4 4 C 1.46654 * 119.99760 * 179.97438 * 2 1 3 5 5 C 1.40060 * 120.24477 * 359.97438 * 4 2 1 6 6 C 1.37618 * 119.89913 * 180.02562 * 5 4 2 7 7 C 1.38699 * 120.39557 * 0.02562 * 6 5 4 8 8 N 1.48016 * 119.75314 * 180.02562 * 7 6 5 9 9 O 1.21801 * 120.00149 * 0.02562 * 8 7 6 10 10 O 1.21803 * 120.00158 * 179.97438 * 8 7 6 11 11 C 1.37936 * 120.49211 * 359.72462 * 7 6 5 12 12 C 1.38955 * 120.08639 * 0.55126 * 11 7 6 13 13 N 1.38700 * 120.19457 * 179.72087 * 12 11 7 14 14 C 1.46845 * 111.00411 * 295.52033 * 13 12 11 15 15 C 1.53034 * 109.52676 * 185.84161 * 14 13 12 16 16 C 1.53126 * 109.27454 * 300.81918 * 15 14 13 17 17 C 1.53119 * 109.16048 * 57.65518 * 16 15 14 18 18 H 1.09004 * 109.50364 * 62.32521 * 17 16 15 19 19 C 1.50705 * 109.50316 * 182.40389 * 17 16 15 20 20 H 1.07990 * 119.99883 * 119.99811 * 19 17 16 21 21 C 1.37878 * 119.99667 * 300.00057 * 19 17 16 22 22 N 1.31513 * 120.00258 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 119.99678 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47223 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47028 * 119.99847 * 23 21 19 26 26 H 1.48503 * 109.47098 * 239.99908 * 23 21 19 27 27 C 1.46850 * 111.00001 * 59.73123 * 13 12 11 28 28 H 1.09002 * 109.47083 * 240.00418 * 1 2 3 29 29 H 1.09002 * 109.47434 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47092 * 120.00471 * 1 2 3 31 31 H 1.08002 * 120.04925 * 0.02562 * 5 4 2 32 32 H 1.08001 * 119.80143 * 179.97438 * 6 5 4 33 33 H 1.08005 * 119.95468 * 180.27891 * 11 7 6 34 34 H 1.08995 * 109.46315 * 65.82012 * 14 13 12 35 35 H 1.09005 * 109.45975 * 305.85526 * 14 13 12 36 36 H 1.08997 * 109.50792 * 180.88024 * 15 14 13 37 37 H 1.09006 * 109.50471 * 60.75677 * 15 14 13 38 38 H 1.08999 * 109.52028 * 177.55723 * 16 15 14 39 39 H 1.09000 * 109.52072 * 297.68377 * 16 15 14 40 40 H 0.96999 * 120.00249 * 180.02562 * 22 21 19 41 41 H 1.09005 * 109.46186 * 54.14030 * 27 13 12 42 42 H 1.09004 * 109.45360 * 294.17185 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2402 -1.2701 0.0006 5 6 1.5450 -2.4860 0.0017 6 6 2.2403 -3.6737 0.0027 7 6 3.6272 -3.6749 0.0033 8 7 4.3606 -4.9606 0.0038 9 8 3.7461 -6.0123 0.0033 10 8 5.5786 -4.9670 0.0038 11 6 4.3282 -2.4870 -0.0030 12 6 3.6468 -1.2760 0.0017 13 7 4.3495 -0.0802 0.0013 14 6 5.1299 0.0722 1.2358 15 6 5.7736 1.4602 1.2661 16 6 6.6807 1.6234 0.0433 17 6 5.8536 1.4122 -1.2279 18 1 5.0768 2.1746 -1.2875 19 6 6.7509 1.5128 -2.4345 20 1 6.8483 0.6730 -3.1064 21 6 7.4475 2.6770 -2.6805 22 7 7.3285 3.6998 -1.8624 23 14 8.5602 2.8013 -4.1757 24 1 8.5203 1.5229 -4.9302 25 1 8.0931 3.9073 -5.0497 26 1 9.9524 3.0725 -3.7355 27 6 5.2075 0.0256 -1.1857 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 0.4650 -2.4915 0.0017 32 1 1.7026 -4.6103 0.0040 33 1 5.4082 -2.4981 -0.0071 34 1 5.9083 -0.6900 1.2698 35 1 4.4722 -0.0420 2.0976 36 1 6.3654 1.5673 2.1751 37 1 4.9951 2.2230 1.2460 38 1 7.1075 2.6264 0.0377 39 1 7.4828 0.8864 0.0838 40 1 7.8183 4.5190 -2.0356 41 1 4.6063 -0.1224 -2.0828 42 1 5.9857 -0.7364 -1.1403 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596325214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:10 Heat of formation + Delta-G solvation = -18.263400 kcal Electronic energy + Delta-G solvation = -27190.564987 eV Core-core repulsion = 23331.594301 eV Total energy + Delta-G solvation = -3858.970686 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.38462 -41.79878 -39.81216 -38.96685 -37.77491 -35.84951 -33.90759 -33.68046 -31.86157 -30.74575 -30.44625 -27.90428 -27.04907 -25.54526 -24.31473 -23.39916 -22.83096 -21.26348 -20.47043 -20.26269 -19.76839 -18.71891 -18.48837 -17.75360 -17.20016 -17.05651 -16.50602 -16.18547 -15.62879 -15.59078 -15.32671 -15.22274 -14.57089 -14.54215 -14.42913 -14.26510 -13.81484 -13.56706 -13.11870 -12.92813 -12.88357 -12.85458 -12.75712 -12.74435 -12.59900 -12.43750 -12.38130 -11.97278 -11.89129 -11.52342 -11.07655 -10.83885 -10.75772 -10.66905 -10.46434 -10.21773 -9.45944 -8.13507 -6.28482 -1.55130 -0.25709 -0.08007 0.22820 1.30119 1.36611 1.38218 1.49545 2.28636 2.37016 2.62158 2.95830 3.13655 3.26768 3.43079 3.64004 3.89196 3.99278 4.03783 4.09945 4.19657 4.32592 4.39423 4.49856 4.51848 4.58019 4.68985 4.71254 4.78844 4.80339 4.87087 4.93817 5.03877 5.06363 5.26753 5.27432 5.34620 5.42307 5.56881 5.74953 5.96708 6.08719 6.24144 6.32698 6.39246 6.71831 6.82650 7.39736 8.91563 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012316 B = 0.004338 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.003286 B = 6453.436806 C = 7680.774058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.370 3.630 3 O -0.448 6.448 4 C -0.108 4.108 5 C -0.039 4.039 6 C -0.061 4.061 7 C -0.022 4.022 8 N 0.026 4.974 9 O -0.124 6.124 10 O -0.221 6.221 11 C -0.112 4.112 12 C 0.133 3.867 13 N -0.495 5.495 14 C 0.073 3.927 15 C -0.106 4.106 16 C -0.104 4.104 17 C 0.059 3.941 18 H -0.004 1.004 19 C -0.539 4.539 20 H 0.049 0.951 21 C 0.017 3.983 22 N -0.913 5.913 23 Si 0.955 3.045 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.278 1.278 27 C 0.090 3.910 28 H 0.128 0.872 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.216 0.784 32 H 0.194 0.806 33 H 0.133 0.867 34 H 0.035 0.965 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.262 0.738 41 H 0.050 0.950 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.788 -13.782 7.098 23.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.246 3.754 3 O -0.321 6.321 4 C -0.110 4.110 5 C -0.058 4.058 6 C -0.080 4.080 7 C -0.105 4.105 8 N 0.543 4.457 9 O -0.352 6.352 10 O -0.422 6.422 11 C -0.134 4.134 12 C 0.037 3.963 13 N -0.215 5.215 14 C -0.052 4.052 15 C -0.144 4.144 16 C -0.142 4.142 17 C 0.040 3.960 18 H 0.015 0.985 19 C -0.577 4.577 20 H 0.067 0.933 21 C -0.182 4.182 22 N -0.552 5.552 23 Si 0.780 3.220 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.204 1.204 27 C -0.035 4.035 28 H 0.146 0.854 29 H 0.097 0.903 30 H 0.140 0.860 31 H 0.233 0.767 32 H 0.211 0.789 33 H 0.151 0.849 34 H 0.053 0.947 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -17.939 -11.931 7.111 22.688 hybrid contribution 2.289 -0.496 -0.908 2.512 sum -15.650 -12.427 6.204 20.925 Atomic orbital electron populations 1.22329 0.88965 1.06113 1.07185 1.23089 0.93550 0.86446 0.72297 1.90762 1.73004 1.34839 1.33498 1.21545 0.91952 0.98084 0.99440 1.21972 1.03238 0.87094 0.93455 1.21467 0.88894 1.02878 0.94739 1.21418 0.93850 0.81693 1.13586 1.43982 1.01243 1.03449 0.97056 1.94456 1.69209 1.20909 1.50634 1.94611 0.96316 1.94570 1.56695 1.21674 1.02172 0.91382 0.98191 1.19237 0.93686 0.87559 0.95860 1.59406 1.29468 1.29043 1.03614 1.22096 0.95135 0.97506 0.90477 1.21544 0.98493 0.95857 0.98510 1.21471 0.97000 1.01366 0.94357 1.18513 0.93193 0.90603 0.93644 0.98542 1.21472 1.27128 0.99399 1.09745 0.93259 1.25695 0.98015 0.95298 0.99170 1.70037 1.42976 1.04121 1.38058 0.85558 0.78678 0.78104 0.79624 1.19371 1.20433 1.20360 1.22062 0.92744 0.98866 0.89878 0.85412 0.90290 0.85958 0.76696 0.78935 0.84866 0.94723 0.89825 0.90560 0.93149 0.91961 0.95508 0.92920 0.93152 0.95885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 8.93 71.24 0.64 -1.14 16 2 C 0.37 8.26 7.21 27.88 0.20 8.46 16 3 O -0.45 -15.80 15.76 -3.13 -0.05 -15.85 16 4 C -0.11 -2.26 5.89 -20.05 -0.12 -2.37 16 5 C -0.04 -0.40 9.46 22.57 0.21 -0.19 16 6 C -0.06 -0.82 9.52 22.23 0.21 -0.61 16 7 C -0.02 -0.52 6.85 36.41 0.25 -0.27 16 8 N 0.03 0.71 4.45 -46.37 -0.21 0.50 16 9 O -0.12 -3.10 18.43 18.88 0.35 -2.75 16 10 O -0.22 -7.27 18.42 18.88 0.35 -6.92 16 11 C -0.11 -3.18 8.17 22.37 0.18 -3.00 16 12 C 0.13 3.90 4.67 38.82 0.18 4.08 16 13 N -0.49 -18.39 2.56 -694.55 -1.77 -20.16 16 14 C 0.07 2.57 5.16 86.33 0.45 3.01 16 15 C -0.11 -4.24 6.09 30.65 0.19 -4.06 16 16 C -0.10 -5.11 5.02 30.68 0.15 -4.96 16 17 C 0.06 3.13 2.26 -11.49 -0.03 3.11 16 18 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 19 C -0.54 -30.77 8.56 25.60 0.22 -30.55 16 20 H 0.05 2.78 7.74 -2.92 -0.02 2.76 16 21 C 0.02 0.99 5.30 84.66 0.45 1.44 16 22 N -0.91 -53.98 11.35 21.45 0.24 -53.74 16 23 Si 0.95 44.66 29.54 68.60 2.03 46.69 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 27 C 0.09 3.98 4.33 86.32 0.37 4.36 16 28 H 0.13 0.29 8.08 -2.39 -0.02 0.28 16 29 H 0.08 0.96 8.12 -2.39 -0.02 0.94 16 30 H 0.12 0.45 8.09 -2.38 -0.02 0.43 16 31 H 0.22 -0.27 7.05 -2.91 -0.02 -0.29 16 32 H 0.19 1.30 7.59 -2.91 -0.02 1.28 16 33 H 0.13 4.30 6.64 -2.91 -0.02 4.28 16 34 H 0.03 1.18 7.55 -2.39 -0.02 1.17 16 35 H 0.08 2.53 8.10 -2.38 -0.02 2.51 16 36 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 38 H 0.06 3.46 6.15 -2.39 -0.01 3.44 16 39 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 41 H 0.05 2.27 8.10 -2.38 -0.02 2.25 16 42 H 0.02 1.02 7.30 -2.39 -0.02 1.00 16 Total: -1.00 -76.32 350.67 5.54 -70.78 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 1.04 Total: 4.12 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: 3.56 Total: -22.67 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -1.74 Total: -73.40 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: 0.65 Total: -25.52 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -76.32 5.54 -70.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596325214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.520 kcal (2) G-P(sol) polarization free energy of solvation -76.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds