Wall clock time and date at job start Tue Mar 31 2020 13:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21244 * 120.00116 * 2 1 4 4 C 1.47191 * 119.99546 * 180.02562 * 2 1 3 5 5 C 1.39770 * 120.13621 * 353.70045 * 4 2 1 6 6 C 1.38571 * 119.74643 * 179.97438 * 5 4 2 7 7 N 1.39705 * 119.99484 * 180.02562 * 6 5 4 8 8 C 1.46848 * 111.00152 * 56.04281 * 7 6 5 9 9 C 1.53043 * 109.52245 * 174.16026 * 8 7 6 10 10 C 1.53120 * 109.27534 * 59.18386 * 9 8 7 11 11 C 1.53121 * 109.16233 * 302.34260 * 10 9 8 12 12 H 1.08997 * 109.49932 * 297.71737 * 11 10 9 13 13 C 1.50693 * 109.50406 * 177.59552 * 11 10 9 14 14 H 1.07998 * 120.00281 * 240.00346 * 13 11 10 15 15 C 1.37880 * 120.00240 * 59.99831 * 13 11 10 16 16 N 1.31522 * 119.99845 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 120.00571 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47216 * 89.99908 * 17 15 13 19 19 H 1.48500 * 109.47475 * 210.00576 * 17 15 13 20 20 H 1.48503 * 109.46674 * 329.99852 * 17 15 13 21 21 C 1.46848 * 110.99818 * 291.83543 * 7 6 5 22 22 C 1.39067 * 120.01475 * 359.97438 * 6 5 4 23 23 C 1.38250 * 120.27681 * 359.97438 * 22 6 5 24 24 C 1.37952 * 120.25710 * 359.78428 * 23 22 6 25 25 N 1.48019 * 120.00950 * 180.25294 * 24 23 22 26 26 O 1.21802 * 119.99457 * 129.31964 * 25 24 23 27 27 O 1.21794 * 120.00670 * 309.32051 * 25 24 23 28 28 H 1.09003 * 109.47368 * 270.00142 * 1 2 3 29 29 H 1.08995 * 109.47284 * 149.99145 * 1 2 3 30 30 H 1.09004 * 109.46941 * 29.99958 * 1 2 3 31 31 H 1.07994 * 120.12976 * 359.96464 * 5 4 2 32 32 H 1.08995 * 109.46561 * 294.17966 * 8 7 6 33 33 H 1.08999 * 109.45754 * 54.15288 * 8 7 6 34 34 H 1.09001 * 109.49639 * 179.12011 * 9 8 7 35 35 H 1.08992 * 109.50378 * 299.24162 * 9 8 7 36 36 H 1.08999 * 109.52289 * 62.24996 * 10 9 8 37 37 H 1.09001 * 109.51950 * 182.43753 * 10 9 8 38 38 H 0.96994 * 120.00347 * 179.97438 * 16 15 13 39 39 H 1.08995 * 109.46487 * 305.85429 * 21 7 6 40 40 H 1.09004 * 109.46049 * 65.82426 * 21 7 6 41 41 H 1.08004 * 119.86319 * 180.02562 * 22 6 5 42 42 H 1.08004 * 119.86671 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2748 -0.0006 5 6 1.5531 -2.4832 0.1315 6 6 2.2539 -3.6786 0.1294 7 7 1.5697 -4.8896 0.2606 8 6 0.5402 -5.0275 -0.7775 9 6 -0.0872 -6.4209 -0.6936 10 6 -0.7058 -6.6140 0.6937 11 6 0.3769 -6.4174 1.7585 12 1 1.1524 -7.1730 1.6327 13 6 -0.2358 -6.5475 3.1291 14 1 -0.1892 -5.7206 3.8222 15 6 -0.8561 -7.7223 3.4983 16 7 -0.9125 -8.7295 2.6545 17 14 -1.6163 -7.8834 5.1970 18 1 -3.0330 -7.4409 5.1493 19 1 -1.5549 -9.3012 5.6344 20 1 -0.8651 -7.0361 6.1578 21 6 0.9910 -5.0242 1.6035 22 6 3.6381 -3.6733 -0.0043 23 6 4.3211 -2.4785 -0.1361 24 6 3.6343 -1.2821 -0.1404 25 7 4.3705 -0.0064 -0.2875 26 8 4.0184 0.8070 -1.1229 27 8 5.3282 0.2299 0.4268 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 -0.8899 -0.5139 30 1 -0.3633 0.8900 -0.5139 31 1 0.4782 -2.4853 0.2350 32 1 -0.2310 -4.2722 -0.6268 33 1 0.9941 -4.8922 -1.7592 34 1 -0.8621 -6.5173 -1.4542 35 1 0.6810 -7.1764 -0.8580 36 1 -1.5006 -5.8832 0.8432 37 1 -1.1158 -7.6209 0.7727 38 1 -1.3485 -9.5561 2.9143 39 1 1.7721 -4.8865 2.3511 40 1 0.2176 -4.2689 1.7430 41 1 4.1819 -4.6065 -0.0060 42 1 5.3961 -2.4821 -0.2399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596326617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:06 Heat of formation + Delta-G solvation = -3.918985 kcal Electronic energy + Delta-G solvation = -26822.033440 eV Core-core repulsion = 22963.684775 eV Total energy + Delta-G solvation = -3858.348666 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.23993 -40.56802 -39.40464 -37.68968 -36.40108 -34.24242 -32.72318 -32.35696 -30.38556 -30.12785 -29.56082 -26.21899 -25.20138 -24.59173 -23.51601 -22.03033 -21.59408 -20.30619 -19.27626 -18.88897 -18.62219 -17.60083 -17.33139 -16.26982 -15.94031 -15.62442 -15.45010 -15.00273 -14.84830 -14.66905 -14.47336 -14.09403 -13.44328 -13.22798 -12.89650 -12.70213 -12.62160 -12.54728 -12.40609 -12.25087 -11.94528 -11.53977 -11.12802 -11.08850 -11.03208 -10.98719 -10.86547 -10.37381 -10.18959 -10.12700 -9.80621 -9.67068 -9.51175 -9.28587 -8.94439 -8.51359 -8.32702 -6.14482 -4.21845 -0.27016 0.35942 0.96546 1.33778 1.91046 3.01928 3.20168 3.28261 3.30399 3.40491 3.73296 4.03517 4.31919 4.47956 4.51914 4.68844 4.80347 4.89680 5.06884 5.14573 5.17257 5.23289 5.33101 5.37678 5.43771 5.61271 5.70549 5.80248 5.82943 6.00059 6.07194 6.17788 6.35885 6.40619 6.44705 6.65008 6.86235 7.01112 7.10549 7.18394 7.43413 7.57793 7.65925 7.83152 7.95266 8.24978 8.81369 9.43927 10.91415 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019078 B = 0.003198 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.273260 B = 8754.300533 C = 8907.027056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.381 3.619 3 O -0.428 6.428 4 C -0.110 4.110 5 C -0.102 4.102 6 C 0.144 3.856 7 N -0.510 5.510 8 C 0.063 3.937 9 C -0.118 4.118 10 C -0.114 4.114 11 C 0.057 3.943 12 H 0.038 0.962 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.070 3.930 22 C -0.065 4.065 23 C -0.067 4.067 24 C -0.003 4.003 25 N 0.023 4.977 26 O -0.110 6.110 27 O -0.169 6.169 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.153 0.847 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.095 0.905 38 H 0.262 0.738 39 H 0.066 0.934 40 H 0.030 0.970 41 H 0.159 0.841 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.512 9.729 -8.252 13.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.256 3.744 3 O -0.301 6.301 4 C -0.113 4.113 5 C -0.123 4.123 6 C 0.048 3.952 7 N -0.231 5.231 8 C -0.063 4.063 9 C -0.155 4.155 10 C -0.152 4.152 11 C 0.038 3.962 12 H 0.056 0.944 13 C -0.559 4.559 14 H 0.073 0.927 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.054 4.054 22 C -0.084 4.084 23 C -0.087 4.087 24 C -0.085 4.085 25 N 0.551 4.449 26 O -0.340 6.340 27 O -0.381 6.381 28 H 0.121 0.879 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.170 0.830 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.177 0.823 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.753 9.016 -8.177 12.737 hybrid contribution -0.867 0.642 1.022 1.486 sum 2.886 9.659 -7.155 12.362 Atomic orbital electron populations 1.22202 0.92100 1.05546 1.05361 1.22632 0.92617 0.86885 0.72269 1.90708 1.71710 1.33756 1.33908 1.20251 0.90691 0.96998 1.03388 1.22240 1.01698 0.90695 0.97629 1.19412 0.93599 0.89643 0.92498 1.59935 1.29804 1.26854 1.06549 1.22206 0.91813 0.99160 0.93111 1.21700 0.99313 0.94541 0.99989 1.21709 0.98459 1.03774 0.91225 1.18689 0.93910 0.89362 0.94267 0.94409 1.21063 1.36728 0.99412 0.98670 0.92738 1.24913 0.95901 0.95684 0.97107 1.69868 1.43640 1.04014 1.34919 0.86606 0.79596 0.77398 0.84487 1.20679 1.21127 1.19908 1.22547 0.96799 1.01538 0.84559 1.21397 0.93315 0.97814 0.95912 1.20835 1.01316 0.89368 0.97161 1.21142 0.91557 0.84543 1.11213 1.43375 1.00097 1.01947 0.99519 1.94551 1.69719 1.41513 1.28201 1.94536 1.18585 1.82752 1.42253 0.87861 0.89259 0.88578 0.82958 0.94840 0.91712 0.92789 0.91662 0.94865 0.88668 0.92849 0.91575 0.95195 0.82336 0.83120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.58 9.63 36.01 0.35 -1.24 16 2 C 0.38 4.68 7.09 -30.67 -0.22 4.46 16 3 O -0.43 -6.76 13.72 -19.01 -0.26 -7.02 16 4 C -0.11 -1.37 5.86 -105.09 -0.62 -1.99 16 5 C -0.10 -1.16 8.00 -38.89 -0.31 -1.47 16 6 C 0.14 1.79 4.68 -83.84 -0.39 1.40 16 7 N -0.51 -7.51 4.62 -171.19 -0.79 -8.30 16 8 C 0.06 0.87 5.06 -3.83 -0.02 0.85 16 9 C -0.12 -1.90 6.09 -26.65 -0.16 -2.06 16 10 C -0.11 -2.32 5.02 -26.61 -0.13 -2.46 16 11 C 0.06 1.24 2.26 -91.69 -0.21 1.03 16 12 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 13 C -0.52 -12.96 8.56 -34.44 -0.29 -13.25 16 14 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 15 C 0.07 1.69 5.30 -17.82 -0.09 1.59 16 16 N -0.89 -23.45 11.35 55.43 0.63 -22.82 16 17 Si 0.89 19.94 29.54 -169.99 -5.02 14.92 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 C 0.07 1.24 4.44 -3.83 -0.02 1.22 16 22 C -0.06 -0.71 9.96 -39.27 -0.39 -1.10 16 23 C -0.07 -0.74 9.80 -39.68 -0.39 -1.13 16 24 C 0.00 -0.04 6.32 -79.45 -0.50 -0.54 16 25 N 0.02 0.37 3.60 34.20 0.12 0.49 16 26 O -0.11 -1.85 16.10 -37.25 -0.60 -2.45 16 27 O -0.17 -2.76 19.14 -29.46 -0.56 -3.32 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.09 0.58 6.74 -51.93 -0.35 0.23 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.15 1.50 5.60 -52.49 -0.29 1.21 16 32 H 0.03 0.43 7.14 -51.93 -0.37 0.06 16 33 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 2.25 6.15 -51.93 -0.32 1.93 16 38 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 39 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 40 H 0.03 0.52 7.78 -51.93 -0.40 0.11 16 41 H 0.16 1.50 8.06 -52.48 -0.42 1.07 16 42 H 0.15 1.35 8.06 -52.48 -0.42 0.92 16 LS Contribution 348.12 15.07 5.25 5.25 Total: -1.00 -29.02 348.12 -10.14 -39.17 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.50 Total: -1.24 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -3.40 Total: -14.67 kcal Atomic # 7 Polarization: -30.59 SS G_CDS: -0.04 Total: -30.63 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -1.42 Total: -12.79 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.02 -10.14 -39.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596326617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.248 kcal (2) G-P(sol) polarization free energy of solvation -29.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds