Wall clock time and date at job start Tue Mar 31 2020 13:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21244 * 120.00116 * 2 1 4 4 C 1.47191 * 119.99546 * 180.02562 * 2 1 3 5 5 C 1.39770 * 120.13621 * 353.70045 * 4 2 1 6 6 C 1.38571 * 119.74643 * 179.97438 * 5 4 2 7 7 N 1.39705 * 119.99484 * 180.02562 * 6 5 4 8 8 C 1.46848 * 111.00152 * 56.04281 * 7 6 5 9 9 C 1.53043 * 109.52245 * 174.16026 * 8 7 6 10 10 C 1.53120 * 109.27534 * 59.18386 * 9 8 7 11 11 C 1.53121 * 109.16233 * 302.34260 * 10 9 8 12 12 H 1.08997 * 109.49932 * 297.71737 * 11 10 9 13 13 C 1.50693 * 109.50406 * 177.59552 * 11 10 9 14 14 H 1.07998 * 120.00281 * 240.00346 * 13 11 10 15 15 C 1.37880 * 120.00240 * 59.99831 * 13 11 10 16 16 N 1.31522 * 119.99845 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 120.00571 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47216 * 89.99908 * 17 15 13 19 19 H 1.48500 * 109.47475 * 210.00576 * 17 15 13 20 20 H 1.48503 * 109.46674 * 329.99852 * 17 15 13 21 21 C 1.46848 * 110.99818 * 291.83543 * 7 6 5 22 22 C 1.39067 * 120.01475 * 359.97438 * 6 5 4 23 23 C 1.38250 * 120.27681 * 359.97438 * 22 6 5 24 24 C 1.37952 * 120.25710 * 359.78428 * 23 22 6 25 25 N 1.48019 * 120.00950 * 180.25294 * 24 23 22 26 26 O 1.21802 * 119.99457 * 129.31964 * 25 24 23 27 27 O 1.21794 * 120.00670 * 309.32051 * 25 24 23 28 28 H 1.09003 * 109.47368 * 270.00142 * 1 2 3 29 29 H 1.08995 * 109.47284 * 149.99145 * 1 2 3 30 30 H 1.09004 * 109.46941 * 29.99958 * 1 2 3 31 31 H 1.07994 * 120.12976 * 359.96464 * 5 4 2 32 32 H 1.08995 * 109.46561 * 294.17966 * 8 7 6 33 33 H 1.08999 * 109.45754 * 54.15288 * 8 7 6 34 34 H 1.09001 * 109.49639 * 179.12011 * 9 8 7 35 35 H 1.08992 * 109.50378 * 299.24162 * 9 8 7 36 36 H 1.08999 * 109.52289 * 62.24996 * 10 9 8 37 37 H 1.09001 * 109.51950 * 182.43753 * 10 9 8 38 38 H 0.96994 * 120.00347 * 179.97438 * 16 15 13 39 39 H 1.08995 * 109.46487 * 305.85429 * 21 7 6 40 40 H 1.09004 * 109.46049 * 65.82426 * 21 7 6 41 41 H 1.08004 * 119.86319 * 180.02562 * 22 6 5 42 42 H 1.08004 * 119.86671 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2748 -0.0006 5 6 1.5531 -2.4832 0.1315 6 6 2.2539 -3.6786 0.1294 7 7 1.5697 -4.8896 0.2606 8 6 0.5402 -5.0275 -0.7775 9 6 -0.0872 -6.4209 -0.6936 10 6 -0.7058 -6.6140 0.6937 11 6 0.3769 -6.4174 1.7585 12 1 1.1524 -7.1730 1.6327 13 6 -0.2358 -6.5475 3.1291 14 1 -0.1892 -5.7206 3.8222 15 6 -0.8561 -7.7223 3.4983 16 7 -0.9125 -8.7295 2.6545 17 14 -1.6163 -7.8834 5.1970 18 1 -3.0330 -7.4409 5.1493 19 1 -1.5549 -9.3012 5.6344 20 1 -0.8651 -7.0361 6.1578 21 6 0.9910 -5.0242 1.6035 22 6 3.6381 -3.6733 -0.0043 23 6 4.3211 -2.4785 -0.1361 24 6 3.6343 -1.2821 -0.1404 25 7 4.3705 -0.0064 -0.2875 26 8 4.0184 0.8070 -1.1229 27 8 5.3282 0.2299 0.4268 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 -0.8899 -0.5139 30 1 -0.3633 0.8900 -0.5139 31 1 0.4782 -2.4853 0.2350 32 1 -0.2310 -4.2722 -0.6268 33 1 0.9941 -4.8922 -1.7592 34 1 -0.8621 -6.5173 -1.4542 35 1 0.6810 -7.1764 -0.8580 36 1 -1.5006 -5.8832 0.8432 37 1 -1.1158 -7.6209 0.7727 38 1 -1.3485 -9.5561 2.9143 39 1 1.7721 -4.8865 2.3511 40 1 0.2176 -4.2689 1.7430 41 1 4.1819 -4.6065 -0.0060 42 1 5.3961 -2.4821 -0.2399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596326617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:05 Heat of formation + Delta-G solvation = -17.851678 kcal Electronic energy + Delta-G solvation = -26822.637607 eV Core-core repulsion = 22963.684775 eV Total energy + Delta-G solvation = -3858.952832 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.36623 -41.61578 -40.46739 -38.86938 -37.60383 -35.77078 -33.88753 -33.61516 -31.75545 -31.38201 -30.41335 -27.38224 -26.93676 -25.54428 -24.73866 -23.29845 -22.87710 -21.31666 -20.51531 -20.11202 -19.81289 -18.81073 -18.58412 -17.78884 -16.93110 -16.79236 -16.46590 -16.35260 -15.91208 -15.77075 -15.62542 -15.31416 -14.73615 -14.50083 -14.21081 -14.06208 -13.83142 -13.39997 -13.26432 -13.20562 -13.06097 -12.84670 -12.77362 -12.67695 -12.56729 -12.30367 -12.25302 -11.87673 -11.77113 -11.42523 -11.15079 -10.97439 -10.72006 -10.57644 -10.45177 -10.31736 -9.52465 -8.07801 -6.20931 -1.31472 -0.58411 -0.15610 0.26576 1.00810 1.41907 1.45130 1.52723 2.08877 2.41731 2.55322 2.67070 3.13964 3.20836 3.55215 3.67318 3.78723 3.96516 4.04140 4.21917 4.24928 4.28226 4.38515 4.48212 4.52142 4.56074 4.57912 4.67002 4.84213 4.92182 4.93451 5.00659 5.03713 5.12960 5.15858 5.25716 5.37897 5.53853 5.66360 5.83454 6.06084 6.12420 6.20643 6.27092 6.40958 6.41078 6.91768 7.47620 8.96295 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019078 B = 0.003198 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.273260 B = 8754.300533 C = 8907.027056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.378 3.622 3 O -0.472 6.472 4 C -0.119 4.119 5 C -0.085 4.085 6 C 0.132 3.868 7 N -0.513 5.513 8 C 0.064 3.936 9 C -0.110 4.110 10 C -0.107 4.107 11 C 0.054 3.946 12 H 0.001 0.999 13 C -0.534 4.534 14 H 0.053 0.947 15 C 0.019 3.981 16 N -0.912 5.912 17 Si 0.946 3.054 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.270 1.270 21 C 0.084 3.916 22 C -0.053 4.053 23 C -0.057 4.057 24 C -0.020 4.020 25 N 0.025 4.975 26 O -0.134 6.134 27 O -0.182 6.182 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.173 0.827 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.031 0.969 37 H 0.057 0.943 38 H 0.260 0.740 39 H 0.059 0.941 40 H 0.038 0.962 41 H 0.177 0.823 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.948 10.240 -8.755 13.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.257 3.743 3 O -0.348 6.348 4 C -0.122 4.122 5 C -0.106 4.106 6 C 0.037 3.963 7 N -0.235 5.235 8 C -0.061 4.061 9 C -0.148 4.148 10 C -0.145 4.145 11 C 0.035 3.965 12 H 0.019 0.981 13 C -0.573 4.573 14 H 0.071 0.929 15 C -0.180 4.180 16 N -0.552 5.552 17 Si 0.773 3.227 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.195 1.195 21 C -0.041 4.041 22 C -0.072 4.072 23 C -0.077 4.077 24 C -0.101 4.101 25 N 0.548 4.452 26 O -0.360 6.360 27 O -0.394 6.394 28 H 0.137 0.863 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.191 0.809 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.194 0.806 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.185 9.545 -8.700 13.302 hybrid contribution -0.663 0.411 1.188 1.421 sum 2.522 9.956 -7.512 12.724 Atomic orbital electron populations 1.22275 0.88687 1.07043 1.06680 1.23299 0.94453 0.86081 0.70502 1.90704 1.72861 1.35017 1.36262 1.20409 0.90368 0.97637 1.03775 1.22315 1.02506 0.89601 0.96167 1.19413 0.94040 0.89002 0.93845 1.59741 1.30089 1.28460 1.05203 1.22245 0.92204 0.97673 0.94005 1.21585 0.99493 0.96132 0.97594 1.21500 0.97991 1.01392 0.93659 1.18588 0.93378 0.91038 0.93517 0.98093 1.21484 1.36346 0.99238 1.00208 0.92907 1.25602 0.96636 0.95699 1.00059 1.70009 1.44539 1.04309 1.36302 0.85741 0.78953 0.77065 0.80985 1.20188 1.21359 1.19511 1.22155 0.96660 0.98833 0.86441 1.21558 0.92868 0.98315 0.94499 1.21051 1.02323 0.88359 0.95922 1.21427 0.92199 0.83790 1.12720 1.43704 0.99895 1.02597 0.98953 1.94540 1.69997 1.42687 1.28813 1.94511 1.19315 1.83271 1.42312 0.86324 0.87019 0.87865 0.80934 0.93029 0.88979 0.90611 0.92911 0.95033 0.92465 0.93128 0.92249 0.94367 0.80610 0.81101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.51 9.63 71.24 0.69 -1.82 16 2 C 0.38 8.68 7.09 28.04 0.20 8.88 16 3 O -0.47 -14.81 13.72 20.61 0.28 -14.53 16 4 C -0.12 -2.68 5.86 -20.17 -0.12 -2.80 16 5 C -0.09 -1.64 8.00 22.72 0.18 -1.46 16 6 C 0.13 2.85 4.68 38.16 0.18 3.03 16 7 N -0.51 -13.67 4.62 -695.53 -3.21 -16.88 16 8 C 0.06 1.53 5.06 86.33 0.44 1.97 16 9 C -0.11 -3.34 6.09 30.65 0.19 -3.16 16 10 C -0.11 -4.35 5.02 30.67 0.15 -4.20 16 11 C 0.05 2.35 2.26 -11.49 -0.03 2.33 16 12 H 0.00 0.04 8.14 -2.39 -0.02 0.03 16 13 C -0.53 -26.70 8.56 25.60 0.22 -26.48 16 14 H 0.05 2.59 7.74 -2.91 -0.02 2.56 16 15 C 0.02 1.00 5.30 84.65 0.45 1.44 16 16 N -0.91 -49.32 11.35 21.45 0.24 -49.07 16 17 Si 0.95 40.95 29.54 68.60 2.03 42.97 16 18 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 19 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 C 0.08 2.84 4.44 86.33 0.38 3.22 16 22 C -0.05 -1.00 9.96 22.47 0.22 -0.77 16 23 C -0.06 -1.11 9.80 22.20 0.22 -0.90 16 24 C -0.02 -0.50 6.32 36.70 0.23 -0.27 16 25 N 0.02 0.76 3.60 -45.70 -0.16 0.60 16 26 O -0.13 -4.53 16.10 26.33 0.42 -4.11 16 27 O -0.18 -5.91 19.14 18.89 0.36 -5.55 16 28 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.11 0.97 6.74 -2.39 -0.02 0.95 16 30 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.17 2.59 5.60 -2.91 -0.02 2.58 16 32 H 0.05 1.08 7.14 -2.39 -0.02 1.06 16 33 H 0.09 1.78 8.11 -2.39 -0.02 1.76 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 36 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 2.76 6.15 -2.39 -0.01 2.75 16 38 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 39 H 0.06 2.06 8.11 -2.39 -0.02 2.04 16 40 H 0.04 1.22 7.78 -2.38 -0.02 1.20 16 41 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 42 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -65.29 348.12 4.61 -60.69 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.04 Total: 6.86 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 3.60 Total: -20.98 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: -3.13 Total: -65.36 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: 1.07 Total: -24.18 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.97 kcal Total: -65.29 4.61 -60.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596326617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.835 kcal (2) G-P(sol) polarization free energy of solvation -65.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds