Wall clock time and date at job start Tue Mar 31 2020 13:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21258 * 120.00321 * 2 1 4 4 C 1.47188 * 120.00078 * 180.02562 * 2 1 3 5 5 C 1.39770 * 120.13703 * 256.32158 * 4 2 1 6 6 C 1.38575 * 119.74802 * 180.02562 * 5 4 2 7 7 N 1.39704 * 119.98970 * 179.97438 * 6 5 4 8 8 C 1.46847 * 111.00137 * 56.04774 * 7 6 5 9 9 C 1.53043 * 109.52406 * 185.83606 * 8 7 6 10 10 C 1.53127 * 109.27905 * 300.81969 * 9 8 7 11 11 C 1.53124 * 109.15515 * 57.65422 * 10 9 8 12 12 H 1.08995 * 109.50499 * 62.28744 * 11 10 9 13 13 C 1.50707 * 109.53104 * 182.38308 * 11 10 9 14 14 H 1.08001 * 119.99399 * 119.82264 * 13 11 10 15 15 C 1.37874 * 119.99986 * 299.82796 * 13 11 10 16 16 N 1.31510 * 120.00144 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99896 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47280 * 59.99512 * 17 15 13 19 19 H 1.48500 * 109.47270 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47253 * 299.99826 * 17 15 13 21 21 C 1.46851 * 110.99879 * 180.25389 * 7 6 5 22 22 C 1.39065 * 120.01443 * 0.25464 * 6 5 4 23 23 C 1.38251 * 120.27609 * 359.48946 * 22 6 5 24 24 C 1.37949 * 120.25604 * 0.51197 * 23 22 6 25 25 N 1.48020 * 120.01096 * 179.72368 * 24 23 22 26 26 O 1.21805 * 120.00113 * 5.95921 * 25 24 23 27 27 O 1.21797 * 120.00208 * 185.96431 * 25 24 23 28 28 H 1.08999 * 109.46728 * 269.99553 * 1 2 3 29 29 H 1.08997 * 109.47124 * 29.99399 * 1 2 3 30 30 H 1.09004 * 109.47472 * 149.99645 * 1 2 3 31 31 H 1.08007 * 120.12843 * 0.02562 * 5 4 2 32 32 H 1.09006 * 109.46193 * 65.82402 * 8 7 6 33 33 H 1.08995 * 109.45737 * 305.84547 * 8 7 6 34 34 H 1.08998 * 109.50392 * 60.75955 * 9 8 7 35 35 H 1.08996 * 109.50518 * 180.88295 * 9 8 7 36 36 H 1.08992 * 109.52125 * 177.55706 * 10 9 8 37 37 H 1.08996 * 109.52394 * 297.75457 * 10 9 8 38 38 H 0.97003 * 120.00083 * 179.97438 * 16 15 13 39 39 H 1.08995 * 109.46853 * 294.17887 * 21 7 6 40 40 H 1.09005 * 109.45912 * 54.14842 * 21 7 6 41 41 H 1.07997 * 119.85901 * 179.72229 * 22 6 5 42 42 H 1.08000 * 119.86830 * 180.25609 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2747 -0.0006 5 6 2.8413 -1.7400 1.1737 6 6 3.5327 -2.9409 1.1639 7 7 4.1333 -3.4105 2.3346 8 6 3.1517 -3.5228 3.4211 9 6 3.8678 -3.8985 4.7204 10 6 4.5987 -5.2303 4.5281 11 6 5.5800 -5.1007 3.3598 12 1 6.3273 -4.3428 3.5945 13 6 6.2618 -6.4241 3.1254 14 1 6.1595 -6.9230 2.1730 15 6 7.0161 -6.9979 4.1268 16 7 7.1409 -6.3901 5.2863 17 14 7.8618 -8.6378 3.8360 18 1 8.8101 -8.5113 2.7002 19 1 8.6049 -9.0353 5.0587 20 1 6.8433 -9.6705 3.5176 21 6 4.8142 -4.6902 2.0999 22 6 3.6338 -3.6758 -0.0124 23 6 3.0378 -3.2189 -1.1731 24 6 2.3468 -2.0249 -1.1762 25 7 1.7159 -1.5379 -2.4235 26 8 1.7128 -2.2400 -3.4188 27 8 1.2000 -0.4350 -2.4546 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5139 31 1 2.7652 -1.1658 2.0853 32 1 2.4218 -4.2933 3.1729 33 1 2.6423 -2.5679 3.5503 34 1 4.5883 -3.1217 4.9766 35 1 3.1372 -3.9971 5.5232 36 1 5.1456 -5.4802 5.4371 37 1 3.8744 -6.0151 4.3101 38 1 7.6713 -6.7940 5.9910 39 1 4.0766 -5.4553 1.8579 40 1 5.5122 -4.5833 1.2695 41 1 4.1771 -4.6092 -0.0182 42 1 3.1170 -3.7970 -2.0819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596326618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:09 Heat of formation + Delta-G solvation = -10.319661 kcal Electronic energy + Delta-G solvation = -26669.777419 eV Core-core repulsion = 22811.151199 eV Total energy + Delta-G solvation = -3858.626220 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.34415 -40.65175 -39.45805 -37.67291 -36.63976 -34.36357 -32.65057 -32.11464 -30.69502 -30.06604 -29.74718 -26.35617 -25.53535 -24.18048 -23.66878 -22.28265 -21.40995 -20.45799 -19.33662 -18.88333 -18.47613 -17.64327 -17.51968 -16.32285 -16.16449 -15.90776 -15.45934 -14.89904 -14.62683 -14.59832 -14.40197 -13.97435 -13.70687 -13.39910 -12.93054 -12.81136 -12.72633 -12.58513 -12.35765 -12.11464 -11.87304 -11.64513 -11.26598 -11.21481 -11.12290 -10.99487 -10.89918 -10.46816 -10.32398 -10.15470 -10.11714 -9.76329 -9.56461 -9.45044 -9.00866 -8.51877 -8.14879 -6.18686 -4.26651 -0.28728 0.62594 1.22925 1.32406 1.58847 2.97567 3.19625 3.25678 3.26886 3.40317 3.75114 4.15037 4.28762 4.50070 4.65424 4.73263 4.83224 5.04203 5.11038 5.11916 5.14314 5.24883 5.29729 5.38124 5.50094 5.59259 5.63098 5.70899 5.82295 5.88686 5.99921 6.05528 6.27030 6.30153 6.34985 6.52595 6.75987 6.97383 7.05483 7.06567 7.24152 7.51819 7.55661 7.74925 7.88178 8.17937 8.75904 9.39517 10.87472 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022129 B = 0.003120 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.004400 B = 8972.719478 C = 9928.558646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.409 3.591 3 O -0.432 6.432 4 C -0.061 4.061 5 C -0.122 4.122 6 C 0.188 3.812 7 N -0.481 5.481 8 C 0.063 3.937 9 C -0.122 4.122 10 C -0.115 4.115 11 C 0.055 3.945 12 H 0.038 0.962 13 C -0.523 4.523 14 H 0.056 0.944 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.893 3.107 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.053 3.947 22 C -0.167 4.167 23 C -0.018 4.018 24 C -0.071 4.071 25 N 0.038 4.962 26 O -0.161 6.161 27 O -0.177 6.177 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.151 0.849 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.036 0.964 38 H 0.263 0.737 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.160 0.840 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.341 6.595 -6.150 15.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.283 3.717 3 O -0.304 6.304 4 C -0.064 4.064 5 C -0.144 4.144 6 C 0.084 3.916 7 N -0.191 5.191 8 C -0.060 4.060 9 C -0.160 4.160 10 C -0.153 4.153 11 C 0.036 3.964 12 H 0.056 0.944 13 C -0.561 4.561 14 H 0.074 0.926 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.072 4.072 22 C -0.189 4.189 23 C -0.038 4.038 24 C -0.157 4.157 25 N 0.553 4.447 26 O -0.377 6.377 27 O -0.387 6.387 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.168 0.832 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.177 0.823 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.241 7.229 -5.091 14.302 hybrid contribution -0.010 -1.388 -0.709 1.558 sum -11.251 5.841 -5.800 13.940 Atomic orbital electron populations 1.22153 0.92007 1.05586 1.04386 1.22416 0.92246 0.86712 0.70342 1.90606 1.72053 1.33174 1.34587 1.20227 0.97682 0.96307 0.92171 1.20796 1.00121 0.96225 0.97228 1.19536 0.87335 0.92479 0.92208 1.58856 1.25861 1.30712 1.03699 1.22316 0.92060 1.00631 0.91034 1.21777 0.99330 1.01060 0.93820 1.21738 0.97374 0.92341 1.03869 1.18720 0.92905 0.96769 0.88023 0.94423 1.20990 1.30748 1.04878 0.99496 0.92603 1.24917 0.96021 0.97574 0.95085 1.69853 1.39902 1.38682 1.03954 0.86634 0.79719 0.83844 0.77686 1.20168 1.21193 1.20224 1.22783 0.96919 0.84609 1.02838 1.21657 1.03800 1.01888 0.91589 1.20825 0.91326 0.91695 0.99932 1.20827 1.10559 1.00142 0.84159 1.43526 0.98540 1.00116 1.02476 1.94525 1.63234 1.55369 1.24567 1.94516 1.46641 1.07185 1.90373 0.88366 0.88212 0.90257 0.83170 0.93446 0.91019 0.91551 0.92278 0.88477 0.94562 0.92705 0.93661 0.90698 0.82290 0.82615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 9.16 36.00 0.33 -1.29 16 2 C 0.41 5.09 4.54 -30.68 -0.14 4.96 16 3 O -0.43 -6.72 17.86 5.58 0.10 -6.62 16 4 C -0.06 -0.76 5.53 -105.09 -0.58 -1.34 16 5 C -0.12 -1.48 8.91 -38.88 -0.35 -1.83 16 6 C 0.19 2.48 5.63 -83.84 -0.47 2.01 16 7 N -0.48 -7.27 4.70 -171.19 -0.80 -8.07 16 8 C 0.06 0.87 5.26 -3.83 -0.02 0.85 16 9 C -0.12 -1.94 6.09 -26.64 -0.16 -2.11 16 10 C -0.12 -2.34 5.03 -26.60 -0.13 -2.47 16 11 C 0.05 1.19 2.26 -91.69 -0.21 0.98 16 12 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 13 C -0.52 -12.82 8.56 -34.44 -0.29 -13.12 16 14 H 0.06 1.33 7.74 -52.49 -0.41 0.93 16 15 C 0.07 1.69 5.30 -17.82 -0.09 1.59 16 16 N -0.89 -23.35 11.36 55.43 0.63 -22.72 16 17 Si 0.89 19.75 29.54 -169.99 -5.02 14.73 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 C 0.05 0.92 3.37 -3.83 -0.01 0.91 16 22 C -0.17 -2.02 8.82 -39.27 -0.35 -2.37 16 23 C -0.02 -0.20 9.54 -39.68 -0.38 -0.58 16 24 C -0.07 -0.92 6.87 -79.45 -0.55 -1.47 16 25 N 0.04 0.54 4.45 34.20 0.15 0.70 16 26 O -0.16 -2.31 18.46 -29.46 -0.54 -2.85 16 27 O -0.18 -2.62 15.32 -29.47 -0.45 -3.07 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.67 7.83 -51.93 -0.41 0.27 16 31 H 0.15 1.61 7.16 -52.48 -0.38 1.24 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.80 6.71 -51.93 -0.35 0.46 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 2.28 6.17 -51.93 -0.32 1.96 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 39 H 0.05 0.75 7.73 -51.93 -0.40 0.35 16 40 H 0.07 1.27 6.97 -51.93 -0.36 0.91 16 41 H 0.16 1.82 5.78 -52.49 -0.30 1.51 16 42 H 0.16 1.49 7.61 -52.49 -0.40 1.09 16 LS Contribution 346.90 15.07 5.23 5.23 Total: -1.00 -27.95 346.90 -9.54 -37.49 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.42 Total: 0.48 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -3.41 Total: -15.29 kcal Atomic # 7 Polarization: -30.08 SS G_CDS: -0.02 Total: -30.10 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.90 Total: -12.55 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.95 -9.54 -37.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596326618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.166 kcal (2) G-P(sol) polarization free energy of solvation -27.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds