Wall clock time and date at job start Tue Mar 31 2020 13:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21258 * 120.00321 * 2 1 4 4 C 1.47188 * 120.00078 * 180.02562 * 2 1 3 5 5 C 1.39770 * 120.13703 * 256.32158 * 4 2 1 6 6 C 1.38575 * 119.74802 * 180.02562 * 5 4 2 7 7 N 1.39704 * 119.98970 * 179.97438 * 6 5 4 8 8 C 1.46847 * 111.00137 * 56.04774 * 7 6 5 9 9 C 1.53043 * 109.52406 * 185.83606 * 8 7 6 10 10 C 1.53127 * 109.27905 * 300.81969 * 9 8 7 11 11 C 1.53124 * 109.15515 * 57.65422 * 10 9 8 12 12 H 1.08995 * 109.50499 * 62.28744 * 11 10 9 13 13 C 1.50707 * 109.53104 * 182.38308 * 11 10 9 14 14 H 1.08001 * 119.99399 * 119.82264 * 13 11 10 15 15 C 1.37874 * 119.99986 * 299.82796 * 13 11 10 16 16 N 1.31510 * 120.00144 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99896 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47280 * 59.99512 * 17 15 13 19 19 H 1.48500 * 109.47270 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47253 * 299.99826 * 17 15 13 21 21 C 1.46851 * 110.99879 * 180.25389 * 7 6 5 22 22 C 1.39065 * 120.01443 * 0.25464 * 6 5 4 23 23 C 1.38251 * 120.27609 * 359.48946 * 22 6 5 24 24 C 1.37949 * 120.25604 * 0.51197 * 23 22 6 25 25 N 1.48020 * 120.01096 * 179.72368 * 24 23 22 26 26 O 1.21805 * 120.00113 * 5.95921 * 25 24 23 27 27 O 1.21797 * 120.00208 * 185.96431 * 25 24 23 28 28 H 1.08999 * 109.46728 * 269.99553 * 1 2 3 29 29 H 1.08997 * 109.47124 * 29.99399 * 1 2 3 30 30 H 1.09004 * 109.47472 * 149.99645 * 1 2 3 31 31 H 1.08007 * 120.12843 * 0.02562 * 5 4 2 32 32 H 1.09006 * 109.46193 * 65.82402 * 8 7 6 33 33 H 1.08995 * 109.45737 * 305.84547 * 8 7 6 34 34 H 1.08998 * 109.50392 * 60.75955 * 9 8 7 35 35 H 1.08996 * 109.50518 * 180.88295 * 9 8 7 36 36 H 1.08992 * 109.52125 * 177.55706 * 10 9 8 37 37 H 1.08996 * 109.52394 * 297.75457 * 10 9 8 38 38 H 0.97003 * 120.00083 * 179.97438 * 16 15 13 39 39 H 1.08995 * 109.46853 * 294.17887 * 21 7 6 40 40 H 1.09005 * 109.45912 * 54.14842 * 21 7 6 41 41 H 1.07997 * 119.85901 * 179.72229 * 22 6 5 42 42 H 1.08000 * 119.86830 * 180.25609 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2747 -0.0006 5 6 2.8413 -1.7400 1.1737 6 6 3.5327 -2.9409 1.1639 7 7 4.1333 -3.4105 2.3346 8 6 3.1517 -3.5228 3.4211 9 6 3.8678 -3.8985 4.7204 10 6 4.5987 -5.2303 4.5281 11 6 5.5800 -5.1007 3.3598 12 1 6.3273 -4.3428 3.5945 13 6 6.2618 -6.4241 3.1254 14 1 6.1595 -6.9230 2.1730 15 6 7.0161 -6.9979 4.1268 16 7 7.1409 -6.3901 5.2863 17 14 7.8618 -8.6378 3.8360 18 1 8.8101 -8.5113 2.7002 19 1 8.6049 -9.0353 5.0587 20 1 6.8433 -9.6705 3.5176 21 6 4.8142 -4.6902 2.0999 22 6 3.6338 -3.6758 -0.0124 23 6 3.0378 -3.2189 -1.1731 24 6 2.3468 -2.0249 -1.1762 25 7 1.7159 -1.5379 -2.4235 26 8 1.7128 -2.2400 -3.4188 27 8 1.2000 -0.4350 -2.4546 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5139 31 1 2.7652 -1.1658 2.0853 32 1 2.4218 -4.2933 3.1729 33 1 2.6423 -2.5679 3.5503 34 1 4.5883 -3.1217 4.9766 35 1 3.1372 -3.9971 5.5232 36 1 5.1456 -5.4802 5.4371 37 1 3.8744 -6.0151 4.3101 38 1 7.6713 -6.7940 5.9910 39 1 4.0766 -5.4553 1.8579 40 1 5.5122 -4.5833 1.2695 41 1 4.1771 -4.6092 -0.0182 42 1 3.1170 -3.7970 -2.0819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596326618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:08 Heat of formation + Delta-G solvation = -24.343779 kcal Electronic energy + Delta-G solvation = -26670.385550 eV Core-core repulsion = 22811.151199 eV Total energy + Delta-G solvation = -3859.234351 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.40555 -41.72774 -40.53205 -38.84439 -37.73205 -35.87676 -34.05799 -33.23351 -31.93718 -31.36941 -30.65059 -27.49895 -27.12316 -25.33965 -24.91699 -23.42078 -22.69792 -21.50169 -20.69896 -19.96374 -19.58828 -18.86817 -18.69310 -17.85888 -17.21515 -17.07444 -16.42469 -16.39526 -15.90842 -15.63807 -15.43771 -15.11736 -14.89261 -14.80928 -14.28693 -14.17304 -13.90689 -13.47514 -13.32614 -13.13884 -13.04900 -12.84988 -12.74357 -12.62476 -12.52885 -12.34523 -12.31093 -11.93213 -11.82677 -11.57558 -11.25168 -11.14724 -11.00507 -10.68618 -10.50404 -10.39700 -9.26061 -8.10696 -6.24267 -1.34213 -0.31434 0.18110 0.29052 0.64445 1.43353 1.44603 1.50973 1.99808 2.35345 2.47708 2.73023 3.18517 3.21753 3.58323 3.64559 3.78634 3.95195 3.98841 4.10671 4.22603 4.32540 4.37363 4.44263 4.49038 4.52781 4.56300 4.62480 4.74301 4.77258 4.88516 4.93980 4.99146 5.03421 5.08387 5.26782 5.30471 5.46755 5.62489 5.73406 5.95392 6.02618 6.13309 6.14247 6.34689 6.44373 6.87675 7.44677 8.93809 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022129 B = 0.003120 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.004400 B = 8972.719478 C = 9928.558646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.410 3.590 3 O -0.471 6.471 4 C -0.066 4.066 5 C -0.114 4.114 6 C 0.181 3.819 7 N -0.492 5.492 8 C 0.065 3.935 9 C -0.114 4.114 10 C -0.110 4.110 11 C 0.051 3.949 12 H -0.002 1.002 13 C -0.535 4.535 14 H 0.059 0.941 15 C 0.017 3.983 16 N -0.914 5.914 17 Si 0.950 3.050 18 H -0.273 1.273 19 H -0.289 1.289 20 H -0.269 1.269 21 C 0.068 3.932 22 C -0.165 4.165 23 C -0.008 4.008 24 C -0.078 4.078 25 N 0.038 4.962 26 O -0.163 6.163 27 O -0.195 6.195 28 H 0.129 0.871 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.166 0.834 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.033 0.967 38 H 0.260 0.740 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.166 0.834 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.997 6.429 -6.973 16.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.287 3.713 3 O -0.346 6.346 4 C -0.070 4.070 5 C -0.135 4.135 6 C 0.078 3.922 7 N -0.203 5.203 8 C -0.059 4.059 9 C -0.152 4.152 10 C -0.148 4.148 11 C 0.032 3.968 12 H 0.016 0.984 13 C -0.574 4.574 14 H 0.077 0.923 15 C -0.182 4.182 16 N -0.553 5.553 17 Si 0.776 3.224 18 H -0.198 1.198 19 H -0.215 1.215 20 H -0.194 1.194 21 C -0.058 4.058 22 C -0.187 4.187 23 C -0.028 4.028 24 C -0.164 4.164 25 N 0.551 4.449 26 O -0.379 6.379 27 O -0.401 6.401 28 H 0.147 0.853 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.184 0.816 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.184 0.816 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -12.929 7.081 -5.934 15.890 hybrid contribution 0.513 -1.348 -0.474 1.518 sum -12.415 5.733 -6.408 15.102 Atomic orbital electron populations 1.22215 0.89156 1.05947 1.06440 1.22957 0.93754 0.85934 0.68657 1.90601 1.73015 1.34263 1.36729 1.20365 0.97857 0.96545 0.92210 1.20882 0.99217 0.95755 0.97689 1.19534 0.87946 0.92982 0.91706 1.58780 1.27022 1.29559 1.04949 1.22375 0.91610 1.02760 0.89131 1.21657 0.99384 0.97886 0.96296 1.21532 0.96941 0.94874 1.01442 1.18623 0.92853 0.94459 0.90875 0.98430 1.21449 1.30553 1.05993 0.99388 0.92261 1.25648 0.96967 1.00536 0.95048 1.70006 1.40742 1.39972 1.04623 0.85741 0.78832 0.80551 0.77303 1.19843 1.21518 1.19445 1.22420 0.96971 0.86144 1.00228 1.21733 1.03566 1.02066 0.91336 1.21004 0.90169 0.91153 1.00490 1.20990 1.10952 1.00755 0.83688 1.43695 0.98431 0.99977 1.02791 1.94513 1.63161 1.55252 1.25020 1.94519 1.47401 1.07553 1.90622 0.85267 0.87904 0.89773 0.81634 0.92320 0.87734 0.92863 0.89905 0.92251 0.94790 0.93101 0.92719 0.90646 0.81641 0.80638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 9.16 71.23 0.65 -2.07 16 2 C 0.41 9.47 4.54 28.04 0.13 9.60 16 3 O -0.47 -14.22 17.86 -2.96 -0.05 -14.27 16 4 C -0.07 -1.52 5.53 -20.17 -0.11 -1.63 16 5 C -0.11 -2.46 8.91 22.72 0.20 -2.26 16 6 C 0.18 4.31 5.63 38.17 0.22 4.53 16 7 N -0.49 -13.92 4.70 -695.52 -3.27 -17.19 16 8 C 0.06 1.59 5.26 86.33 0.45 2.04 16 9 C -0.11 -3.51 6.09 30.65 0.19 -3.32 16 10 C -0.11 -4.49 5.03 30.68 0.15 -4.34 16 11 C 0.05 2.24 2.26 -11.48 -0.03 2.21 16 12 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 13 C -0.54 -26.55 8.56 25.60 0.22 -26.33 16 14 H 0.06 2.82 7.74 -2.91 -0.02 2.79 16 15 C 0.02 0.89 5.30 84.65 0.45 1.34 16 16 N -0.91 -49.72 11.36 21.45 0.24 -49.48 16 17 Si 0.95 40.78 29.54 68.60 2.03 42.80 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 21 C 0.07 2.28 3.37 86.32 0.29 2.57 16 22 C -0.17 -3.56 8.82 22.47 0.20 -3.36 16 23 C -0.01 -0.17 9.54 22.20 0.21 0.04 16 24 C -0.08 -1.86 6.87 36.70 0.25 -1.61 16 25 N 0.04 1.02 4.45 -45.70 -0.20 0.82 16 26 O -0.16 -4.38 18.46 18.88 0.35 -4.03 16 27 O -0.19 -5.51 15.32 18.90 0.29 -5.22 16 28 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.21 7.83 -2.39 -0.02 1.19 16 31 H 0.17 3.01 7.16 -2.91 -0.02 2.99 16 32 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.10 1.92 6.71 -2.39 -0.02 1.91 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.06 2.88 6.17 -2.39 -0.01 2.87 16 37 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 39 H 0.05 1.72 7.73 -2.39 -0.02 1.70 16 40 H 0.08 2.48 6.97 -2.38 -0.02 2.47 16 41 H 0.17 3.37 5.78 -2.91 -0.02 3.35 16 42 H 0.18 2.84 7.61 -2.91 -0.02 2.82 16 Total: -1.00 -62.08 346.90 3.91 -58.17 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 1.05 Total: 10.98 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 3.48 Total: -22.59 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -3.23 Total: -65.84 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: 0.59 Total: -23.52 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.80 kcal Total: -62.08 3.91 -58.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596326618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.829 kcal (2) G-P(sol) polarization free energy of solvation -62.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds