Wall clock time and date at job start Tue Mar 31 2020 12:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35898 * 117.00304 * 2 1 4 4 C 1.38733 * 120.05533 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94543 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.04938 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.93669 * 179.97438 * 6 5 4 8 8 O 1.42905 * 109.47129 * 90.00393 * 7 6 5 9 9 C 1.42895 * 113.99995 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47278 * 179.97438 * 9 8 7 11 11 N 1.29946 * 126.28432 * 270.02187 * 10 9 8 12 12 O 1.21310 * 110.24917 * 179.68063 * 11 10 9 13 13 C 1.33640 * 109.81094 * 0.47066 * 12 11 10 14 14 C 1.50700 * 126.55270 * 179.80349 * 13 12 11 15 15 H 1.08997 * 109.47183 * 179.68662 * 14 13 12 16 16 C 1.53005 * 109.46686 * 299.68517 * 14 13 12 17 17 C 1.50699 * 109.47177 * 59.68341 * 14 13 12 18 18 H 1.08003 * 120.00234 * 356.76264 * 17 14 13 19 19 C 1.37881 * 119.99940 * 176.76618 * 17 14 13 20 20 N 1.31512 * 119.99613 * 352.56505 * 19 17 14 21 21 Si 1.86791 * 120.00006 * 172.56543 * 19 17 14 22 22 H 1.48499 * 109.47350 * 265.07866 * 21 19 17 23 23 H 1.48497 * 109.47213 * 145.08149 * 21 19 17 24 24 H 1.48508 * 109.47221 * 25.08307 * 21 19 17 25 25 N 1.31133 * 106.89812 * 359.53417 * 13 12 11 26 26 C 1.38262 * 120.11911 * 0.25104 * 6 5 4 27 27 C 1.38156 * 120.05089 * 359.45505 * 26 6 5 28 28 H 1.08994 * 109.47455 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46658 * 300.00510 * 1 2 3 30 30 H 1.08998 * 109.47295 * 59.99891 * 1 2 3 31 31 H 1.07997 * 120.02831 * 359.97438 * 4 3 2 32 32 H 1.07992 * 119.97340 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.47652 * 329.99742 * 7 6 5 34 34 H 1.09003 * 109.46769 * 209.99577 * 7 6 5 35 35 H 1.08998 * 109.47478 * 59.99580 * 9 8 7 36 36 H 1.09003 * 109.47187 * 299.99270 * 9 8 7 37 37 H 1.08999 * 109.47030 * 298.98185 * 16 14 13 38 38 H 1.08998 * 109.47195 * 58.98322 * 16 14 13 39 39 H 1.09000 * 109.46810 * 178.98038 * 16 14 13 40 40 H 0.97005 * 120.00009 * 180.02562 * 20 19 17 41 41 H 1.07998 * 119.97760 * 179.70776 * 26 6 5 42 42 H 1.07999 * 120.02385 * 180.25244 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0563 2.5168 0.0000 6 6 3.3020 3.6756 0.0016 7 6 3.9864 5.0184 0.0028 8 8 4.2020 5.4443 -1.3442 9 6 4.8493 6.7133 -1.4559 10 6 5.0255 7.0609 -2.9116 11 7 6.0484 6.7620 -3.6552 12 8 5.8835 7.1778 -4.7828 13 6 4.7086 7.8093 -4.8655 14 6 4.1299 8.4720 -6.0890 15 1 3.1558 8.8964 -5.8459 16 6 5.0687 9.5854 -6.5580 17 6 3.9735 7.4513 -7.1866 18 1 4.3123 6.4373 -7.0334 19 6 3.3980 7.8120 -8.3865 20 7 2.8540 9.0014 -8.5235 21 14 3.3909 6.6112 -9.8173 22 1 4.5553 6.8835 -10.6978 23 1 2.1351 6.7729 -10.5931 24 1 3.4768 5.2223 -9.2984 25 7 4.1529 7.7370 -3.6799 26 6 1.9213 3.6047 0.0079 27 6 1.2916 2.3750 0.0013 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 4.0209 0.3798 -0.0005 32 1 5.1346 2.5748 0.0000 33 1 4.9445 4.9375 0.5161 34 1 3.3585 5.7456 0.5176 35 1 5.8254 6.6671 -0.9730 36 1 4.2398 7.4760 -0.9712 37 1 5.1676 10.3329 -5.7708 38 1 6.0482 9.1638 -6.7838 39 1 4.6591 10.0528 -7.4534 40 1 2.4487 9.2551 -9.3676 41 1 1.3344 4.5113 0.0139 42 1 0.2130 2.3202 0.0021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596582063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:01 Heat of formation + Delta-G solvation = 6.535321 kcal Electronic energy + Delta-G solvation = -25128.288892 eV Core-core repulsion = 21270.393559 eV Total energy + Delta-G solvation = -3857.895333 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.78797 -40.38939 -38.54255 -37.27425 -35.25655 -34.64731 -32.17076 -31.52281 -31.19963 -29.86746 -28.15062 -27.34860 -25.35773 -25.29355 -23.48497 -22.89381 -22.41940 -21.43718 -20.02072 -18.42943 -17.56063 -16.93709 -16.70089 -16.49221 -16.09635 -16.00767 -15.90777 -15.55130 -14.92150 -14.76808 -14.08455 -13.97561 -13.76517 -13.56568 -12.99087 -12.91400 -12.43665 -12.36359 -12.14451 -11.89725 -11.69090 -11.64512 -11.27195 -11.20895 -11.05063 -10.99934 -10.81236 -10.67164 -10.45889 -10.33537 -10.04165 -9.78528 -9.51588 -9.20906 -8.92708 -8.55840 -8.40830 -6.23464 -4.29343 1.07783 1.14994 1.90184 2.76467 2.98420 3.25238 3.32294 3.37407 3.42410 3.76939 3.94255 4.29673 4.40231 4.51134 4.61064 4.63694 4.76668 4.83696 4.85325 4.99969 5.05939 5.11715 5.13104 5.15059 5.26296 5.34745 5.45711 5.49666 5.80690 5.92196 6.00399 6.11116 6.40038 6.46129 6.50356 6.53978 6.63025 6.79365 6.83266 7.00877 7.11343 7.37362 7.57041 7.75419 7.97610 8.70113 8.92537 9.35905 10.85093 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012608 B = 0.002670 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.267465 B =10485.787323 C =11996.244956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.319 6.319 3 C 0.131 3.869 4 C -0.156 4.156 5 C -0.057 4.057 6 C -0.127 4.127 7 C 0.108 3.892 8 O -0.373 6.373 9 C 0.164 3.836 10 C 0.154 3.846 11 N -0.392 5.392 12 O 0.076 5.924 13 C 0.245 3.755 14 C 0.124 3.876 15 H 0.080 0.920 16 C -0.134 4.134 17 C -0.525 4.525 18 H 0.063 0.937 19 C 0.072 3.928 20 N -0.883 5.883 21 Si 0.902 3.098 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.272 1.272 25 N -0.504 5.504 26 C -0.054 4.054 27 C -0.211 4.211 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.021 0.979 38 H 0.041 0.959 39 H 0.089 0.911 40 H 0.267 0.733 41 H 0.128 0.872 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.681 -10.332 18.973 21.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.232 6.232 3 C 0.086 3.914 4 C -0.174 4.174 5 C -0.075 4.075 6 C -0.127 4.127 7 C 0.032 3.968 8 O -0.292 6.292 9 C 0.087 3.913 10 C -0.120 4.120 11 N -0.104 5.104 12 O 0.018 5.982 13 C 0.027 3.973 14 C 0.104 3.896 15 H 0.098 0.902 16 C -0.193 4.193 17 C -0.564 4.564 18 H 0.081 0.919 19 C -0.132 4.132 20 N -0.520 5.520 21 Si 0.729 3.271 22 H -0.202 1.202 23 H -0.210 1.210 24 H -0.196 1.196 25 N -0.239 5.239 26 C -0.073 4.073 27 C -0.230 4.230 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.040 0.960 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.146 0.854 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.401 -10.898 19.329 22.234 hybrid contribution -0.351 -0.322 -0.788 0.921 sum -1.752 -11.220 18.541 21.742 Atomic orbital electron populations 1.23075 0.78267 1.03977 1.01542 1.86063 1.21523 1.26998 1.88605 1.19088 0.92428 0.84156 0.95730 1.20409 0.91376 0.98645 1.07008 1.20890 1.00001 0.90874 0.95736 1.19476 0.93610 0.94101 1.05549 1.21256 0.98890 0.92727 0.83925 1.88076 1.79852 1.35240 1.26001 1.20222 0.97844 0.86450 0.86834 1.25137 0.88611 0.99210 0.98998 1.74517 1.24401 1.19500 0.92014 1.85262 1.36846 1.52285 1.23836 1.30181 0.81208 0.89374 0.96580 1.17847 0.95341 0.93273 0.83171 0.90228 1.21800 0.98799 0.97088 1.01609 1.20880 1.41906 0.96049 0.97525 0.91852 1.24873 0.93959 0.95712 0.98650 1.69923 1.36254 1.19868 1.25966 0.86402 0.77672 0.81244 0.81787 1.20249 1.20977 1.19635 1.71939 1.28602 1.21495 1.01818 1.20889 0.93829 0.97335 0.95216 1.21228 1.00153 0.92222 1.09374 0.88211 0.92610 0.92414 0.85020 0.85085 0.92197 0.92097 0.90848 0.90224 0.96035 0.93970 0.89272 0.92351 0.85376 0.85252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.37 10.50 -19.42 -0.20 -3.57 16 3 C 0.13 1.49 6.69 -39.22 -0.26 1.23 16 4 C -0.16 -1.73 9.99 -39.43 -0.39 -2.13 16 5 C -0.06 -0.63 9.69 -39.60 -0.38 -1.02 16 6 C -0.13 -1.50 5.51 -104.60 -0.58 -2.07 16 7 C 0.11 1.21 6.06 36.01 0.22 1.43 16 8 O -0.37 -5.90 10.31 -35.23 -0.36 -6.26 16 9 C 0.16 2.46 6.56 36.00 0.24 2.70 16 10 C 0.15 3.10 7.85 -156.37 -1.23 1.87 16 11 N -0.39 -8.40 12.16 30.90 0.38 -8.03 16 12 O 0.08 1.72 11.31 18.11 0.20 1.92 16 13 C 0.24 5.71 6.96 -13.05 -0.09 5.62 16 14 C 0.12 3.05 2.66 -92.92 -0.25 2.80 16 15 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 16 C -0.13 -3.00 9.00 37.16 0.33 -2.66 16 17 C -0.53 -14.00 8.50 -34.44 -0.29 -14.29 16 18 H 0.06 1.72 7.75 -52.48 -0.41 1.32 16 19 C 0.07 1.89 5.22 -17.82 -0.09 1.80 16 20 N -0.88 -23.77 11.91 55.43 0.66 -23.11 16 21 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 N -0.50 -11.38 11.55 -9.86 -0.11 -11.49 16 26 C -0.05 -0.61 9.69 -39.60 -0.38 -1.00 16 27 C -0.21 -2.25 9.04 -39.43 -0.36 -2.61 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.31 7.66 -51.92 -0.40 -0.09 16 30 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 34 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 2.12 6.61 -51.93 -0.34 1.78 16 40 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 41 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 42 H 0.13 1.09 6.30 -52.49 -0.33 0.76 16 LS Contribution 365.30 15.07 5.50 5.50 Total: -1.00 -31.00 365.30 -7.14 -38.14 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.66 Total: -1.54 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -2.53 Total: -7.17 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.92 Total: -42.63 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.36 Total: -7.91 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.00 -7.14 -38.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596582063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.676 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds