Wall clock time and date at job start Tue Mar 31 2020 12:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35898 * 117.00304 * 2 1 4 4 C 1.38733 * 120.05533 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94543 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.04938 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.93669 * 179.97438 * 6 5 4 8 8 O 1.42905 * 109.47129 * 90.00393 * 7 6 5 9 9 C 1.42895 * 113.99995 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47278 * 179.97438 * 9 8 7 11 11 N 1.29946 * 126.28432 * 270.02187 * 10 9 8 12 12 O 1.21310 * 110.24917 * 179.68063 * 11 10 9 13 13 C 1.33640 * 109.81094 * 0.47066 * 12 11 10 14 14 C 1.50700 * 126.55270 * 179.80349 * 13 12 11 15 15 H 1.08997 * 109.47183 * 179.68662 * 14 13 12 16 16 C 1.53005 * 109.46686 * 299.68517 * 14 13 12 17 17 C 1.50699 * 109.47177 * 59.68341 * 14 13 12 18 18 H 1.08003 * 120.00234 * 356.76264 * 17 14 13 19 19 C 1.37881 * 119.99940 * 176.76618 * 17 14 13 20 20 N 1.31512 * 119.99613 * 352.56505 * 19 17 14 21 21 Si 1.86791 * 120.00006 * 172.56543 * 19 17 14 22 22 H 1.48499 * 109.47350 * 265.07866 * 21 19 17 23 23 H 1.48497 * 109.47213 * 145.08149 * 21 19 17 24 24 H 1.48508 * 109.47221 * 25.08307 * 21 19 17 25 25 N 1.31133 * 106.89812 * 359.53417 * 13 12 11 26 26 C 1.38262 * 120.11911 * 0.25104 * 6 5 4 27 27 C 1.38156 * 120.05089 * 359.45505 * 26 6 5 28 28 H 1.08994 * 109.47455 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46658 * 300.00510 * 1 2 3 30 30 H 1.08998 * 109.47295 * 59.99891 * 1 2 3 31 31 H 1.07997 * 120.02831 * 359.97438 * 4 3 2 32 32 H 1.07992 * 119.97340 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.47652 * 329.99742 * 7 6 5 34 34 H 1.09003 * 109.46769 * 209.99577 * 7 6 5 35 35 H 1.08998 * 109.47478 * 59.99580 * 9 8 7 36 36 H 1.09003 * 109.47187 * 299.99270 * 9 8 7 37 37 H 1.08999 * 109.47030 * 298.98185 * 16 14 13 38 38 H 1.08998 * 109.47195 * 58.98322 * 16 14 13 39 39 H 1.09000 * 109.46810 * 178.98038 * 16 14 13 40 40 H 0.97005 * 120.00009 * 180.02562 * 20 19 17 41 41 H 1.07998 * 119.97760 * 179.70776 * 26 6 5 42 42 H 1.07999 * 120.02385 * 180.25244 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0563 2.5168 0.0000 6 6 3.3020 3.6756 0.0016 7 6 3.9864 5.0184 0.0028 8 8 4.2020 5.4443 -1.3442 9 6 4.8493 6.7133 -1.4559 10 6 5.0255 7.0609 -2.9116 11 7 6.0484 6.7620 -3.6552 12 8 5.8835 7.1778 -4.7828 13 6 4.7086 7.8093 -4.8655 14 6 4.1299 8.4720 -6.0890 15 1 3.1558 8.8964 -5.8459 16 6 5.0687 9.5854 -6.5580 17 6 3.9735 7.4513 -7.1866 18 1 4.3123 6.4373 -7.0334 19 6 3.3980 7.8120 -8.3865 20 7 2.8540 9.0014 -8.5235 21 14 3.3909 6.6112 -9.8173 22 1 4.5553 6.8835 -10.6978 23 1 2.1351 6.7729 -10.5931 24 1 3.4768 5.2223 -9.2984 25 7 4.1529 7.7370 -3.6799 26 6 1.9213 3.6047 0.0079 27 6 1.2916 2.3750 0.0013 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 4.0209 0.3798 -0.0005 32 1 5.1346 2.5748 0.0000 33 1 4.9445 4.9375 0.5161 34 1 3.3585 5.7456 0.5176 35 1 5.8254 6.6671 -0.9730 36 1 4.2398 7.4760 -0.9712 37 1 5.1676 10.3329 -5.7708 38 1 6.0482 9.1638 -6.7838 39 1 4.6591 10.0528 -7.4534 40 1 2.4487 9.2551 -9.3676 41 1 1.3344 4.5113 0.0139 42 1 0.2130 2.3202 0.0021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596582063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:00 Heat of formation + Delta-G solvation = -12.986034 kcal Electronic energy + Delta-G solvation = -25129.135401 eV Core-core repulsion = 21270.393559 eV Total energy + Delta-G solvation = -3858.741842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.47711 -41.16107 -39.48528 -38.19270 -37.05196 -36.38130 -33.94808 -32.47220 -32.05505 -31.60130 -29.09202 -28.27709 -27.34002 -26.15488 -25.29100 -24.06575 -23.68371 -22.26489 -21.72689 -19.23321 -19.17767 -18.58409 -18.04160 -17.57430 -17.49354 -17.00669 -16.95327 -16.68243 -16.34577 -15.72598 -15.56379 -15.11558 -14.79224 -14.66751 -14.43628 -13.86576 -13.74807 -13.61217 -13.29320 -13.17014 -13.10210 -12.84002 -12.82292 -12.70217 -12.50974 -12.35358 -12.22264 -12.13371 -11.95433 -11.86087 -11.79852 -11.39485 -10.77254 -10.74202 -10.57288 -10.02420 -9.22446 -8.25290 -6.38226 0.12560 0.30295 0.33295 1.16030 1.44220 1.46465 1.56379 2.00883 2.31000 2.38064 2.41951 2.74658 3.03812 3.12254 3.30194 3.75974 3.86136 3.92103 4.04838 4.13723 4.18175 4.30944 4.34972 4.35915 4.45396 4.47695 4.58183 4.69685 4.70742 4.71673 4.74137 4.86268 4.96741 5.02030 5.03989 5.20114 5.30140 5.41145 5.57693 5.64067 5.72679 5.76924 6.00011 6.03242 6.37011 6.63344 7.19789 7.30061 8.83167 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012608 B = 0.002670 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.267465 B =10485.787323 C =11996.244956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.119 3.881 4 C -0.170 4.170 5 C -0.064 4.064 6 C -0.145 4.145 7 C 0.106 3.894 8 O -0.406 6.406 9 C 0.164 3.836 10 C 0.161 3.839 11 N -0.401 5.401 12 O 0.061 5.939 13 C 0.236 3.764 14 C 0.126 3.874 15 H 0.057 0.943 16 C -0.123 4.123 17 C -0.546 4.546 18 H 0.050 0.950 19 C 0.034 3.966 20 N -0.904 5.904 21 Si 0.960 3.040 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.277 1.277 25 N -0.518 5.518 26 C -0.067 4.067 27 C -0.217 4.217 28 H 0.120 0.880 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.042 0.958 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.271 0.729 41 H 0.139 0.861 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 -10.833 19.914 22.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.074 3.926 4 C -0.189 4.189 5 C -0.082 4.082 6 C -0.146 4.146 7 C 0.031 3.969 8 O -0.325 6.325 9 C 0.087 3.913 10 C -0.113 4.113 11 N -0.115 5.115 12 O 0.007 5.993 13 C 0.017 3.983 14 C 0.105 3.895 15 H 0.075 0.925 16 C -0.182 4.182 17 C -0.585 4.585 18 H 0.068 0.932 19 C -0.168 4.168 20 N -0.541 5.541 21 Si 0.785 3.215 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.202 1.202 25 N -0.253 5.253 26 C -0.085 4.085 27 C -0.236 4.236 28 H 0.138 0.862 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.157 0.843 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.413 -11.392 20.260 23.286 hybrid contribution -0.416 -0.235 -0.977 1.088 sum -1.829 -11.627 19.283 22.592 Atomic orbital electron populations 1.23353 0.76438 1.05659 1.02228 1.86043 1.23508 1.26783 1.88511 1.19310 0.92820 0.84731 0.95745 1.20664 0.91778 0.99230 1.07192 1.21129 1.00849 0.90793 0.95439 1.19713 0.94033 0.94686 1.06151 1.21497 1.00562 0.92721 0.82152 1.88012 1.80210 1.35376 1.28940 1.20525 1.00120 0.87123 0.83572 1.26089 0.87203 0.97227 1.00785 1.74505 1.25158 1.20127 0.91746 1.85242 1.36639 1.52649 1.24767 1.29900 0.81792 0.89951 0.96655 1.17657 0.94937 0.93533 0.83338 0.92519 1.21648 0.98289 0.96759 1.01455 1.21037 1.42642 0.95980 0.98799 0.93210 1.25545 0.93408 0.97245 1.00586 1.69995 1.36363 1.21015 1.26700 0.85511 0.78157 0.78868 0.78993 1.19189 1.20211 1.20152 1.71952 1.29251 1.22144 1.01929 1.21149 0.94079 0.98029 0.95212 1.21476 1.01231 0.91900 1.08953 0.86154 0.91331 0.92261 0.84056 0.83688 0.89822 0.90092 0.87795 0.87884 0.93936 0.93390 0.90873 0.91926 0.84316 0.83401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -6.82 10.50 -92.40 -0.97 -7.79 16 3 C 0.12 2.64 6.69 22.51 0.15 2.80 16 4 C -0.17 -3.70 9.99 22.37 0.22 -3.47 16 5 C -0.06 -1.36 9.69 22.26 0.22 -1.15 16 6 C -0.15 -3.24 5.51 -19.85 -0.11 -3.35 16 7 C 0.11 2.11 6.06 71.24 0.43 2.55 16 8 O -0.41 -12.03 10.31 -148.98 -1.54 -13.57 16 9 C 0.16 4.50 6.56 71.23 0.47 4.97 16 10 C 0.16 6.28 7.85 138.46 1.09 7.37 16 11 N -0.40 -16.89 12.16 -60.29 -0.73 -17.62 16 12 O 0.06 2.77 11.31 74.85 0.85 3.61 16 13 C 0.24 11.07 6.96 88.38 0.61 11.69 16 14 C 0.13 6.28 2.66 -12.28 -0.03 6.24 16 15 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 16 C -0.12 -5.49 9.00 71.98 0.65 -4.85 16 17 C -0.55 -29.55 8.50 25.60 0.22 -29.33 16 18 H 0.05 2.76 7.75 -2.91 -0.02 2.74 16 19 C 0.03 1.79 5.22 84.66 0.44 2.23 16 20 N -0.90 -48.74 11.91 21.45 0.26 -48.49 16 21 Si 0.96 42.12 29.54 68.60 2.03 44.14 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 25 N -0.52 -23.19 11.55 -303.17 -3.50 -26.69 16 26 C -0.07 -1.43 9.69 22.26 0.22 -1.21 16 27 C -0.22 -4.43 9.04 22.37 0.20 -4.23 16 28 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.64 7.66 -2.38 -0.02 0.63 16 30 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 31 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 32 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 33 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 34 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 35 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.07 3.50 6.61 -2.39 -0.02 3.48 16 40 H 0.27 13.75 8.31 -92.70 -0.77 12.98 16 41 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 42 H 0.15 2.29 6.30 -2.91 -0.02 2.27 16 Total: -1.00 -66.33 365.30 3.30 -63.02 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 1.03 Total: 11.80 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 5.89 Total: -8.43 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -3.98 Total: -92.79 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -1.66 Total: -17.75 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -66.33 3.30 -63.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596582063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.036 kcal (2) G-P(sol) polarization free energy of solvation -66.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds