Wall clock time and date at job start Tue Mar 31 2020 13:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47011 * 2 1 4 4 C 1.35969 * 117.00087 * 179.97438 * 3 2 1 5 5 C 1.38726 * 119.98563 * 359.72216 * 4 3 2 6 6 C 1.38084 * 120.01719 * 179.72634 * 5 4 3 7 7 C 1.38847 * 119.98220 * 0.54957 * 6 5 4 8 8 N 1.40113 * 120.01363 * 179.74966 * 7 6 5 9 9 C 1.46498 * 119.99586 * 237.08742 * 8 7 6 10 10 C 1.50701 * 109.46978 * 90.00362 * 9 8 7 11 11 H 1.07994 * 120.00077 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00091 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00099 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 119.99982 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46915 * 90.00170 * 14 12 10 16 16 H 1.48497 * 109.47274 * 209.99852 * 14 12 10 17 17 H 1.48497 * 109.47484 * 330.00187 * 14 12 10 18 18 C 1.34770 * 120.00315 * 57.09036 * 8 7 6 19 19 O 1.21294 * 120.00147 * 5.68174 * 18 8 7 20 20 C 1.50697 * 120.00059 * 185.68548 * 18 8 7 21 21 H 1.09007 * 112.92030 * 308.50998 * 20 18 8 22 22 C 1.53724 * 113.71033 * 80.00115 * 20 18 8 23 23 C 1.51510 * 86.61136 * 114.40145 * 22 20 18 24 24 O 1.21279 * 134.17606 * 180.02562 * 23 22 20 25 25 N 1.35840 * 91.64909 * 0.02562 * 23 22 20 26 26 C 1.38841 * 119.97316 * 359.72295 * 7 6 5 27 27 C 1.38088 * 119.98352 * 0.02562 * 26 7 6 28 28 H 1.08995 * 109.47610 * 300.00221 * 1 2 3 29 29 H 1.08996 * 109.47160 * 60.00600 * 1 2 3 30 30 H 1.09003 * 109.47380 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47062 * 119.99691 * 2 1 3 32 32 H 1.08995 * 109.47655 * 239.99224 * 2 1 3 33 33 H 1.07999 * 119.99112 * 0.02562 * 5 4 3 34 34 H 1.08004 * 120.01133 * 180.29577 * 6 5 4 35 35 H 1.09004 * 109.47371 * 210.00013 * 9 8 7 36 36 H 1.08993 * 109.47577 * 330.00264 * 9 8 7 37 37 H 0.97000 * 120.00607 * 179.97438 * 13 12 10 38 38 H 1.09005 * 113.69053 * 228.83034 * 22 20 18 39 39 H 1.08995 * 113.69066 * 359.96652 * 22 20 18 40 40 H 0.96993 * 132.38316 * 180.02562 * 25 23 22 41 41 H 1.08001 * 120.01385 * 180.02562 * 26 7 6 42 42 H 1.08003 * 119.99474 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3542 1.5255 0.0005 5 6 4.1990 0.4252 0.0069 6 6 5.5681 0.6053 0.0017 7 6 6.0991 1.8883 0.0017 8 7 7.4881 2.0718 0.0018 9 6 8.1238 2.8513 1.0669 10 6 8.4981 1.9360 2.2042 11 1 8.2835 0.8796 2.1401 12 6 9.1145 2.4474 3.3265 13 7 9.4407 1.6488 4.3191 14 14 9.4864 4.2747 3.4370 15 1 8.3331 4.9780 4.0540 16 1 10.6973 4.4839 4.2707 17 1 9.7241 4.8148 2.0744 18 6 8.2393 1.5315 -0.9780 19 8 7.7058 0.9747 -1.9142 20 6 9.7423 1.6189 -0.9103 21 1 10.1013 2.6343 -0.7423 22 6 10.3808 0.5756 0.0207 23 6 11.0090 -0.0184 -1.2235 24 8 11.7423 -0.9615 -1.4322 25 7 10.4273 0.9214 -2.0133 26 6 5.2530 2.9891 0.0011 27 6 3.8842 2.8075 0.0010 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8898 33 1 3.7859 -0.5727 0.0110 34 1 6.2257 -0.2514 0.0018 35 1 9.0208 3.3336 0.6785 36 1 7.4292 3.6109 1.4254 37 1 9.8747 2.0085 5.1085 38 1 11.1048 0.9962 0.7187 39 1 9.6576 -0.0820 0.5029 40 1 10.4530 1.0782 -2.9702 41 1 5.6654 3.9873 0.0007 42 1 3.2259 3.6637 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597129880.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:38 Heat of formation + Delta-G solvation = -42.737164 kcal Electronic energy + Delta-G solvation = -26670.890418 eV Core-core repulsion = 22810.858470 eV Total energy + Delta-G solvation = -3860.031948 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.90003 -39.99309 -38.90394 -37.19462 -35.93766 -35.12710 -32.69819 -31.86235 -30.74063 -29.42999 -28.33913 -27.59504 -25.50652 -24.07257 -22.84019 -22.29874 -21.36303 -19.70751 -18.96399 -18.16707 -17.44693 -17.09037 -16.95300 -16.44942 -16.09473 -15.84627 -15.68492 -14.84682 -14.49135 -14.34929 -13.97436 -13.57949 -13.38294 -13.34344 -13.11870 -12.89966 -12.66608 -12.65796 -12.24592 -12.12261 -11.87246 -11.81545 -11.74855 -11.51641 -11.25403 -10.85433 -10.84757 -10.61135 -10.40000 -9.92950 -9.80747 -9.68612 -8.92939 -8.80924 -8.75234 -8.63135 -7.44619 -6.32554 -4.36079 1.56930 1.64386 2.72184 2.84394 3.08825 3.12581 3.15385 3.21810 3.26522 3.74878 4.02009 4.15644 4.35967 4.79841 4.80889 4.85475 4.93620 4.97444 5.03550 5.13535 5.14625 5.30405 5.34840 5.55164 5.61503 5.63082 5.80012 5.85390 6.02837 6.12353 6.19846 6.23166 6.34200 6.41432 6.48076 6.55557 6.74151 6.81559 7.07168 7.22067 7.28447 7.56578 7.76848 8.20937 8.48508 8.57946 8.71764 9.24454 10.79150 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010690 B = 0.004480 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.539245 B = 6248.551735 C = 7922.668765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.320 6.320 4 C 0.113 3.887 5 C -0.194 4.194 6 C -0.065 4.065 7 C 0.137 3.863 8 N -0.541 5.541 9 C 0.204 3.796 10 C -0.544 4.544 11 H 0.082 0.918 12 C 0.082 3.918 13 N -0.883 5.883 14 Si 0.866 3.134 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.264 1.264 18 C 0.518 3.482 19 O -0.540 6.540 20 C 0.123 3.877 21 H 0.125 0.875 22 C -0.139 4.139 23 C 0.530 3.470 24 O -0.514 6.514 25 N -0.728 5.728 26 C -0.090 4.090 27 C -0.140 4.140 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.039 0.961 36 H 0.037 0.963 37 H 0.268 0.732 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.400 0.600 41 H 0.130 0.870 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.732 2.454 -7.263 12.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.234 6.234 4 C 0.068 3.932 5 C -0.213 4.213 6 C -0.085 4.085 7 C 0.046 3.954 8 N -0.268 5.268 9 C 0.085 3.915 10 C -0.582 4.582 11 H 0.100 0.900 12 C -0.123 4.123 13 N -0.520 5.520 14 Si 0.692 3.308 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.188 1.188 18 C 0.305 3.695 19 O -0.418 6.418 20 C 0.014 3.986 21 H 0.143 0.857 22 C -0.179 4.179 23 C 0.316 3.684 24 O -0.388 6.388 25 N -0.388 5.388 26 C -0.110 4.110 27 C -0.159 4.159 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.241 0.759 41 H 0.148 0.852 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.612 1.778 -7.679 12.431 hybrid contribution 0.266 0.938 -0.028 0.976 sum -9.346 2.716 -7.708 12.415 Atomic orbital electron populations 1.21761 0.93028 1.02645 1.03355 1.22734 0.95562 0.82398 1.01467 1.86034 1.19305 1.28883 1.89185 1.18879 0.81908 0.94117 0.98314 1.21018 0.93679 0.97888 1.08722 1.20902 0.94298 0.96591 0.96707 1.17449 0.83164 0.92891 1.01908 1.45553 1.03833 1.51814 1.25568 1.20070 0.93367 0.92081 0.86029 1.21236 1.40593 0.96457 0.99873 0.89962 1.24807 0.94789 0.97456 0.95199 1.69863 1.40062 1.35258 1.06768 0.87014 0.78762 0.86016 0.78958 1.19844 1.20756 1.18828 1.20426 0.88892 0.78361 0.81810 1.90691 1.73949 1.43691 1.33452 1.22150 0.90451 1.00286 0.85687 0.85727 1.23756 1.00905 0.96299 0.96940 1.22403 0.78128 0.80250 0.87597 1.90723 1.37181 1.27774 1.83126 1.48537 1.49280 1.31818 1.09169 1.20873 0.92033 0.98465 0.99599 1.20137 0.94396 0.94682 1.06693 0.91581 0.91675 0.90565 0.92015 0.92171 0.85621 0.85825 0.94318 0.94530 0.92150 0.85294 0.86027 0.75872 0.85188 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.15 0.38 -0.80 16 2 C 0.05 0.55 5.46 37.15 0.20 0.76 16 3 O -0.32 -4.37 10.14 -19.64 -0.20 -4.57 16 4 C 0.11 1.71 6.69 -39.22 -0.26 1.45 16 5 C -0.19 -3.00 9.03 -39.46 -0.36 -3.35 16 6 C -0.07 -1.16 8.97 -39.41 -0.35 -1.51 16 7 C 0.14 2.51 5.15 -83.62 -0.43 2.08 16 8 N -0.54 -10.01 2.56 -114.70 -0.29 -10.31 16 9 C 0.20 3.93 3.91 -5.19 -0.02 3.91 16 10 C -0.54 -12.51 8.77 -34.44 -0.30 -12.81 16 11 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 12 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 13 N -0.88 -23.54 13.96 55.43 0.77 -22.76 16 14 Si 0.87 17.93 27.47 -169.99 -4.67 13.26 16 15 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 16 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 17 H -0.26 -4.97 6.54 56.52 0.37 -4.60 16 18 C 0.52 9.42 6.98 -10.99 -0.08 9.34 16 19 O -0.54 -11.04 16.07 5.54 0.09 -10.95 16 20 C 0.12 1.91 3.91 -68.38 -0.27 1.64 16 21 H 0.13 1.66 6.95 -51.92 -0.36 1.30 16 22 C -0.14 -2.27 6.78 -27.15 -0.18 -2.46 16 23 C 0.53 9.19 9.85 -10.27 -0.10 9.08 16 24 O -0.51 -10.51 18.03 5.56 0.10 -10.41 16 25 N -0.73 -10.98 6.89 -59.14 -0.41 -11.39 16 26 C -0.09 -1.45 9.32 -39.41 -0.37 -1.81 16 27 C -0.14 -2.08 9.98 -39.46 -0.39 -2.48 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 32 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 33 H 0.13 1.63 6.29 -52.49 -0.33 1.30 16 34 H 0.12 2.26 8.06 -52.48 -0.42 1.83 16 35 H 0.04 0.69 5.40 -51.93 -0.28 0.41 16 36 H 0.04 0.70 6.80 -51.93 -0.35 0.35 16 37 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.13 2.00 8.14 -51.93 -0.42 1.58 16 39 H 0.12 2.18 7.75 -51.93 -0.40 1.77 16 40 H 0.40 5.30 8.96 -40.82 -0.37 4.93 16 41 H 0.13 1.85 7.84 -52.49 -0.41 1.44 16 42 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 356.55 15.07 5.37 5.37 Total: -1.00 -30.17 356.55 -7.28 -37.45 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -5.41 Total: 9.37 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -2.63 Total: 4.94 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.07 Total: -44.46 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.01 Total: -25.94 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -4.67 Total: 13.26 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.17 -7.28 -37.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597129880.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.286 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds