Wall clock time and date at job start Tue Mar 31 2020 13:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47011 * 2 1 4 4 C 1.35969 * 117.00087 * 179.97438 * 3 2 1 5 5 C 1.38726 * 119.98563 * 359.72216 * 4 3 2 6 6 C 1.38084 * 120.01719 * 179.72634 * 5 4 3 7 7 C 1.38847 * 119.98220 * 0.54957 * 6 5 4 8 8 N 1.40113 * 120.01363 * 179.74966 * 7 6 5 9 9 C 1.46498 * 119.99586 * 237.08742 * 8 7 6 10 10 C 1.50701 * 109.46978 * 90.00362 * 9 8 7 11 11 H 1.07994 * 120.00077 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00091 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00099 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 119.99982 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46915 * 90.00170 * 14 12 10 16 16 H 1.48497 * 109.47274 * 209.99852 * 14 12 10 17 17 H 1.48497 * 109.47484 * 330.00187 * 14 12 10 18 18 C 1.34770 * 120.00315 * 57.09036 * 8 7 6 19 19 O 1.21294 * 120.00147 * 5.68174 * 18 8 7 20 20 C 1.50697 * 120.00059 * 185.68548 * 18 8 7 21 21 H 1.09007 * 112.92030 * 308.50998 * 20 18 8 22 22 C 1.53724 * 113.71033 * 80.00115 * 20 18 8 23 23 C 1.51510 * 86.61136 * 114.40145 * 22 20 18 24 24 O 1.21279 * 134.17606 * 180.02562 * 23 22 20 25 25 N 1.35840 * 91.64909 * 0.02562 * 23 22 20 26 26 C 1.38841 * 119.97316 * 359.72295 * 7 6 5 27 27 C 1.38088 * 119.98352 * 0.02562 * 26 7 6 28 28 H 1.08995 * 109.47610 * 300.00221 * 1 2 3 29 29 H 1.08996 * 109.47160 * 60.00600 * 1 2 3 30 30 H 1.09003 * 109.47380 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47062 * 119.99691 * 2 1 3 32 32 H 1.08995 * 109.47655 * 239.99224 * 2 1 3 33 33 H 1.07999 * 119.99112 * 0.02562 * 5 4 3 34 34 H 1.08004 * 120.01133 * 180.29577 * 6 5 4 35 35 H 1.09004 * 109.47371 * 210.00013 * 9 8 7 36 36 H 1.08993 * 109.47577 * 330.00264 * 9 8 7 37 37 H 0.97000 * 120.00607 * 179.97438 * 13 12 10 38 38 H 1.09005 * 113.69053 * 228.83034 * 22 20 18 39 39 H 1.08995 * 113.69066 * 359.96652 * 22 20 18 40 40 H 0.96993 * 132.38316 * 180.02562 * 25 23 22 41 41 H 1.08001 * 120.01385 * 180.02562 * 26 7 6 42 42 H 1.08003 * 119.99474 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3542 1.5255 0.0005 5 6 4.1990 0.4252 0.0069 6 6 5.5681 0.6053 0.0017 7 6 6.0991 1.8883 0.0017 8 7 7.4881 2.0718 0.0018 9 6 8.1238 2.8513 1.0669 10 6 8.4981 1.9360 2.2042 11 1 8.2835 0.8796 2.1401 12 6 9.1145 2.4474 3.3265 13 7 9.4407 1.6488 4.3191 14 14 9.4864 4.2747 3.4370 15 1 8.3331 4.9780 4.0540 16 1 10.6973 4.4839 4.2707 17 1 9.7241 4.8148 2.0744 18 6 8.2393 1.5315 -0.9780 19 8 7.7058 0.9747 -1.9142 20 6 9.7423 1.6189 -0.9103 21 1 10.1013 2.6343 -0.7423 22 6 10.3808 0.5756 0.0207 23 6 11.0090 -0.0184 -1.2235 24 8 11.7423 -0.9615 -1.4322 25 7 10.4273 0.9214 -2.0133 26 6 5.2530 2.9891 0.0011 27 6 3.8842 2.8075 0.0010 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8898 33 1 3.7859 -0.5727 0.0110 34 1 6.2257 -0.2514 0.0018 35 1 9.0208 3.3336 0.6785 36 1 7.4292 3.6109 1.4254 37 1 9.8747 2.0085 5.1085 38 1 11.1048 0.9962 0.7187 39 1 9.6576 -0.0820 0.5029 40 1 10.4530 1.0782 -2.9702 41 1 5.6654 3.9873 0.0007 42 1 3.2259 3.6637 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597129880.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:37 Heat of formation + Delta-G solvation = -63.349317 kcal Electronic energy + Delta-G solvation = -26671.784228 eV Core-core repulsion = 22810.858470 eV Total energy + Delta-G solvation = -3860.925758 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.28307 -41.19994 -40.21692 -38.47920 -37.38068 -36.57857 -34.45284 -32.78124 -31.91907 -30.76567 -29.80858 -29.03006 -26.84670 -25.16843 -24.29710 -23.62754 -22.48689 -21.07445 -20.31952 -19.28431 -19.05171 -18.56443 -18.40580 -17.90938 -17.15862 -17.01743 -16.99405 -16.35075 -15.99456 -15.56737 -15.45413 -14.90812 -14.64054 -14.45390 -14.31570 -14.28763 -14.08377 -13.78989 -13.63434 -13.26405 -13.17608 -12.98411 -12.94474 -12.84103 -12.59431 -12.43935 -12.05384 -11.77842 -11.63081 -11.57459 -11.34773 -11.17519 -10.69455 -10.26031 -10.05190 -9.97827 -8.76244 -8.17889 -6.25240 0.32490 0.37080 1.30417 1.43662 1.49699 1.52010 1.59134 1.80641 2.26166 2.41786 2.44181 2.75684 2.98612 3.17741 3.46881 3.58030 3.81151 3.89870 4.06445 4.06531 4.17154 4.28889 4.38341 4.39179 4.53273 4.62820 4.77007 4.82592 4.86409 4.89013 4.96047 4.98718 5.07594 5.08891 5.20748 5.34265 5.42658 5.49239 5.59229 5.80332 5.90821 6.21017 6.44344 6.48875 6.80611 7.08012 7.22984 7.39469 8.97120 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010690 B = 0.004480 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.539245 B = 6248.551735 C = 7922.668765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 O -0.325 6.325 4 C 0.113 3.887 5 C -0.196 4.196 6 C -0.088 4.088 7 C 0.104 3.896 8 N -0.540 5.540 9 C 0.207 3.793 10 C -0.530 4.530 11 H 0.038 0.962 12 C 0.029 3.971 13 N -0.939 5.939 14 Si 0.926 3.074 15 H -0.275 1.275 16 H -0.292 1.292 17 H -0.222 1.222 18 C 0.515 3.485 19 O -0.567 6.567 20 C 0.130 3.870 21 H 0.162 0.838 22 C -0.136 4.136 23 C 0.530 3.470 24 O -0.549 6.549 25 N -0.711 5.711 26 C -0.091 4.091 27 C -0.139 4.139 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.144 0.856 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.266 0.734 38 H 0.140 0.860 39 H 0.099 0.901 40 H 0.413 0.587 41 H 0.152 0.848 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.841 5.023 -8.328 14.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 O -0.240 6.240 4 C 0.068 3.932 5 C -0.216 4.216 6 C -0.108 4.108 7 C 0.013 3.987 8 N -0.265 5.265 9 C 0.087 3.913 10 C -0.568 4.568 11 H 0.057 0.943 12 C -0.171 4.171 13 N -0.578 5.578 14 Si 0.750 3.250 15 H -0.201 1.201 16 H -0.218 1.218 17 H -0.144 1.144 18 C 0.303 3.697 19 O -0.447 6.447 20 C 0.022 3.978 21 H 0.179 0.821 22 C -0.177 4.177 23 C 0.316 3.684 24 O -0.426 6.426 25 N -0.371 5.371 26 C -0.110 4.110 27 C -0.158 4.158 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.162 0.838 34 H 0.122 0.878 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.158 0.842 39 H 0.117 0.883 40 H 0.255 0.745 41 H 0.169 0.831 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.761 4.372 -8.791 14.567 hybrid contribution 0.428 0.008 0.295 0.520 sum -10.333 4.381 -8.496 14.076 Atomic orbital electron populations 1.21786 0.90963 1.04160 1.03382 1.23061 0.97227 0.81016 1.01956 1.86047 1.18177 1.30960 1.88784 1.19043 0.82668 0.94179 0.97343 1.21191 0.92860 0.99274 1.08232 1.20916 0.95207 0.96237 0.98447 1.17783 0.83388 0.93725 1.03824 1.45515 1.04200 1.51676 1.25151 1.20029 0.94782 0.91443 0.85087 1.21327 1.39237 0.95132 1.01103 0.94325 1.25599 0.94779 1.02035 0.94671 1.70034 1.42257 1.37695 1.07811 0.86039 0.77821 0.80309 0.80847 1.20104 1.21819 1.14431 1.20842 0.89849 0.77687 0.81340 1.90673 1.74702 1.44750 1.34538 1.22266 0.88751 1.01701 0.85116 0.82062 1.23712 1.00587 0.96317 0.97056 1.22481 0.77733 0.79928 0.88222 1.90701 1.38899 1.29249 1.83728 1.48361 1.48038 1.30862 1.09809 1.21116 0.92302 0.98700 0.98889 1.20487 0.94409 0.95520 1.05389 0.91664 0.91509 0.88328 0.91708 0.91521 0.83816 0.87826 0.91325 0.93295 0.92513 0.84239 0.88286 0.74452 0.83073 0.82580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.28 71.98 0.74 -1.22 16 2 C 0.04 0.80 5.46 71.98 0.39 1.19 16 3 O -0.33 -8.30 10.14 -93.20 -0.94 -9.24 16 4 C 0.11 3.27 6.69 22.50 0.15 3.42 16 5 C -0.20 -6.03 9.03 22.35 0.20 -5.83 16 6 C -0.09 -3.21 8.97 22.38 0.20 -3.01 16 7 C 0.10 3.75 5.15 38.11 0.20 3.94 16 8 N -0.54 -19.42 2.56 -635.19 -1.63 -21.05 16 9 C 0.21 7.48 3.91 85.63 0.33 7.82 16 10 C -0.53 -24.38 8.77 25.60 0.22 -24.15 16 11 H 0.04 2.09 7.85 -2.91 -0.02 2.07 16 12 C 0.03 1.38 5.47 84.66 0.46 1.85 16 13 N -0.94 -51.39 13.96 21.45 0.30 -51.09 16 14 Si 0.93 35.26 27.47 68.60 1.88 37.15 16 15 H -0.28 -10.58 7.11 99.48 0.71 -9.88 16 16 H -0.29 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.22 -6.92 6.54 99.48 0.65 -6.27 16 18 C 0.51 18.28 6.98 87.66 0.61 18.89 16 19 O -0.57 -23.10 16.07 -3.07 -0.05 -23.15 16 20 C 0.13 3.80 3.91 44.21 0.17 3.97 16 21 H 0.16 3.60 6.95 -2.38 -0.02 3.59 16 22 C -0.14 -4.45 6.78 30.36 0.21 -4.25 16 23 C 0.53 18.24 9.85 87.64 0.86 19.11 16 24 O -0.55 -22.70 18.03 -3.03 -0.05 -22.75 16 25 N -0.71 -20.43 6.89 -458.79 -3.16 -23.59 16 26 C -0.09 -2.73 9.32 22.38 0.21 -2.53 16 27 C -0.14 -3.84 9.98 22.35 0.22 -3.62 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.06 1.19 7.65 -2.38 -0.02 1.17 16 32 H 0.07 1.18 7.67 -2.39 -0.02 1.16 16 33 H 0.14 3.69 6.29 -2.91 -0.02 3.67 16 34 H 0.10 4.06 8.06 -2.91 -0.02 4.03 16 35 H 0.07 2.11 5.40 -2.39 -0.01 2.10 16 36 H 0.05 1.70 6.80 -2.39 -0.02 1.68 16 37 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 38 H 0.14 4.24 8.14 -2.38 -0.02 4.22 16 39 H 0.10 3.73 7.75 -2.39 -0.02 3.71 16 40 H 0.41 10.16 8.96 -92.71 -0.83 9.33 16 41 H 0.15 3.80 7.84 -2.91 -0.02 3.78 16 42 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -67.27 356.55 1.71 -65.56 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.17 Total: 32.59 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 5.19 Total: 15.58 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -4.49 Total: -95.73 kcal Atomic # 8 Polarization: -54.10 SS G_CDS: -1.05 Total: -55.15 kcal Atomic # 14 Polarization: 35.26 SS G_CDS: 1.88 Total: 37.15 kcal Total: -67.27 1.71 -65.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597129880.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.213 kcal (2) G-P(sol) polarization free energy of solvation -67.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds