Wall clock time and date at job start Tue Mar 31 2020 12:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47365 * 2 1 4 4 C 1.50701 * 109.46623 * 119.99380 * 2 1 3 5 5 H 1.08002 * 119.99879 * 123.30394 * 4 2 1 6 6 C 1.37878 * 120.00492 * 303.30580 * 4 2 1 7 7 N 1.31508 * 120.00422 * 155.24139 * 6 4 2 8 8 Si 1.86807 * 119.99555 * 335.51330 * 6 4 2 9 9 H 1.48495 * 109.47129 * 269.72641 * 8 6 4 10 10 H 1.48498 * 109.46983 * 29.72332 * 8 6 4 11 11 H 1.48499 * 109.46942 * 149.72174 * 8 6 4 12 12 N 1.46498 * 109.47215 * 239.99071 * 2 1 3 13 13 C 1.46500 * 120.00247 * 300.00233 * 12 2 1 14 14 C 1.34780 * 119.99802 * 120.00591 * 12 2 1 15 15 O 1.21361 * 120.00084 * 5.54248 * 14 12 2 16 16 C 1.49335 * 119.99869 * 185.54947 * 14 12 2 17 17 O 1.21391 * 120.00069 * 6.25470 * 16 14 12 18 18 N 1.34773 * 119.99605 * 186.25763 * 16 14 12 19 19 C 1.39879 * 119.99851 * 185.43932 * 18 16 14 20 20 C 1.38613 * 119.94501 * 33.33193 * 19 18 16 21 21 C 1.38168 * 120.25930 * 179.79061 * 20 19 18 22 22 C 1.38402 * 119.83799 * 0.45112 * 21 20 19 23 23 C 1.37839 * 120.12580 * 359.62504 * 22 21 20 24 24 C 1.38723 * 120.83238 * 0.33328 * 23 22 21 25 25 O 1.36192 * 111.27460 * 179.30026 * 24 23 22 26 26 C 1.43772 * 109.23749 * 18.83718 * 25 24 23 27 27 C 1.51657 * 132.11944 * 180.56932 * 23 22 21 28 28 H 1.09008 * 109.46521 * 54.87292 * 1 2 3 29 29 H 1.08995 * 109.47466 * 174.86778 * 1 2 3 30 30 H 1.08997 * 109.47323 * 294.87264 * 1 2 3 31 31 H 0.97004 * 119.99723 * 355.25703 * 7 6 4 32 32 H 1.09010 * 109.46904 * 95.90763 * 13 12 2 33 33 H 1.08993 * 109.47325 * 215.90314 * 13 12 2 34 34 H 1.09003 * 109.47085 * 335.91016 * 13 12 2 35 35 H 0.96999 * 120.00421 * 5.44785 * 18 16 14 36 36 H 1.07997 * 119.86949 * 0.07025 * 20 19 18 37 37 H 1.08001 * 120.08059 * 180.12361 * 21 20 19 38 38 H 1.08000 * 119.93637 * 179.65581 * 22 21 20 39 39 H 1.08998 * 110.75288 * 90.68246 * 26 25 24 40 40 H 1.09010 * 110.75080 * 213.86098 * 26 25 24 41 41 H 1.09002 * 110.93885 * 46.11899 * 27 23 22 42 42 H 1.09001 * 110.97325 * 282.45590 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6964 -1.5563 1.1325 6 6 1.6439 -0.2803 2.4817 7 7 1.6490 -1.1175 3.4958 8 14 1.1031 1.4899 2.7346 9 1 2.2804 2.3206 3.0936 10 1 0.4968 2.0061 1.4812 11 1 0.1022 1.5499 3.8299 12 7 2.0184 -0.6908 -1.1960 13 6 1.6645 -2.0934 -1.4277 14 6 2.7934 -0.0359 -2.0832 15 8 3.1697 1.0926 -1.8433 16 6 3.1887 -0.6990 -3.3616 17 8 2.7217 -1.7806 -3.6541 18 7 4.0642 -0.0965 -4.1904 19 6 4.3480 -0.6611 -5.4383 20 6 3.3601 -1.3458 -6.1287 21 6 3.6321 -1.9024 -7.3637 22 6 4.8987 -1.7835 -7.9088 23 6 5.8850 -1.1049 -7.2255 24 6 5.6298 -0.5389 -5.9850 25 8 6.7400 0.0680 -5.4810 26 6 7.6711 0.3143 -6.5484 27 6 7.3328 -0.8043 -7.5621 28 1 -0.3633 0.5914 -0.8406 29 1 -0.3634 -1.0235 -0.0919 30 1 -0.3634 0.4322 0.9323 31 1 1.8595 -2.0533 3.3511 32 1 0.7975 -2.1453 -2.0865 33 1 2.5052 -2.6083 -1.8925 34 1 1.4272 -2.5701 -0.4766 35 1 4.4975 0.7287 -3.9216 36 1 2.3727 -1.4407 -5.7017 37 1 2.8597 -2.4336 -7.9001 38 1 5.1146 -2.2227 -8.8715 39 1 7.5033 1.2975 -6.9880 40 1 8.6979 0.2212 -6.1944 41 1 7.4279 -0.4436 -8.5863 42 1 7.9611 -1.6801 -7.3998 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599969140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:39 Heat of formation + Delta-G solvation = -51.745571 kcal Electronic energy + Delta-G solvation = -26562.178425 eV Core-core repulsion = 22701.755843 eV Total energy + Delta-G solvation = -3860.422582 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.53743 -40.45895 -38.55256 -37.32934 -36.00288 -34.86769 -32.80473 -32.25830 -30.27956 -29.80787 -29.16101 -26.38571 -25.20342 -24.57527 -23.63523 -22.55037 -22.00477 -20.39498 -19.27931 -17.91937 -17.57140 -17.49558 -17.06062 -16.53868 -16.29739 -15.91274 -15.60979 -15.12001 -14.89580 -14.22554 -13.90862 -13.65207 -13.37680 -13.32995 -13.13162 -13.00033 -12.70494 -12.53852 -12.20867 -12.03433 -11.96258 -11.91600 -11.70786 -11.45764 -11.26465 -11.14515 -10.88736 -10.55990 -10.47373 -10.12105 -9.68501 -9.23210 -8.99694 -8.61260 -8.32646 -8.09512 -7.89942 -6.57089 -4.17204 0.93924 1.08814 1.83847 2.59594 2.97022 3.38851 3.39570 3.44648 3.57630 3.64896 3.90078 4.09798 4.28025 4.43754 4.62099 4.64702 4.72226 4.95271 5.04155 5.11380 5.12443 5.23343 5.36920 5.41448 5.56289 5.88412 5.94299 5.99782 6.12064 6.23085 6.26841 6.27434 6.37067 6.40913 6.48136 6.55050 6.84790 6.89029 6.99472 7.16436 7.26249 7.73156 7.86453 8.13685 8.28330 8.46254 8.82346 9.47324 10.78782 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024749 B = 0.003026 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.091902 B = 9249.666841 C = 9795.777426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.234 3.766 3 H 0.057 0.943 4 C -0.625 4.625 5 H 0.064 0.936 6 C 0.045 3.955 7 N -0.889 5.889 8 Si 1.035 2.965 9 H -0.283 1.283 10 H -0.271 1.271 11 H -0.284 1.284 12 N -0.547 5.547 13 C 0.084 3.916 14 C 0.494 3.506 15 O -0.535 6.535 16 C 0.509 3.491 17 O -0.500 6.500 18 N -0.647 5.647 19 C 0.138 3.862 20 C -0.089 4.089 21 C -0.126 4.126 22 C -0.087 4.087 23 C -0.158 4.158 24 C 0.079 3.921 25 O -0.300 6.300 26 C 0.050 3.950 27 C -0.108 4.108 28 H 0.028 0.972 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.271 0.729 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.424 0.576 36 H 0.145 0.855 37 H 0.133 0.867 38 H 0.126 0.874 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.275 0.079 -24.378 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.133 3.867 3 H 0.075 0.925 4 C -0.662 4.662 5 H 0.082 0.918 6 C -0.162 4.162 7 N -0.520 5.520 8 Si 0.862 3.138 9 H -0.210 1.210 10 H -0.196 1.196 11 H -0.210 1.210 12 N -0.277 5.277 13 C -0.059 4.059 14 C 0.275 3.725 15 O -0.414 6.414 16 C 0.292 3.708 17 O -0.374 6.374 18 N -0.294 5.294 19 C 0.043 3.957 20 C -0.109 4.109 21 C -0.145 4.145 22 C -0.106 4.106 23 C -0.160 4.160 24 C 0.032 3.968 25 O -0.214 6.214 26 C -0.025 4.025 27 C -0.145 4.145 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.262 0.738 36 H 0.163 0.837 37 H 0.151 0.849 38 H 0.144 0.856 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.110 0.890 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.645 1.042 -22.946 23.912 hybrid contribution 0.871 -0.906 -1.144 1.699 sum 7.516 0.136 -24.090 25.236 Atomic orbital electron populations 1.22448 0.98061 1.00638 1.00043 1.19405 0.90634 0.94696 0.81927 0.92530 1.22043 1.34454 1.19040 0.90665 0.91818 1.25646 0.93759 1.04828 0.92000 1.70826 1.41733 1.05246 1.34245 0.84254 0.77401 0.76002 0.76168 1.21004 1.19633 1.20972 1.47969 1.45880 1.12505 1.21354 1.21938 1.00841 0.81251 1.01868 1.19634 0.81753 0.86669 0.84429 1.90718 1.54736 1.18835 1.77073 1.20811 0.79279 0.85062 0.85615 1.90716 1.52579 1.19386 1.74741 1.43193 1.43738 1.27835 1.14619 1.17072 0.89431 1.02258 0.86937 1.20993 0.98810 0.97177 0.93905 1.20934 0.96842 1.01306 0.95371 1.20302 0.91999 0.98598 0.99688 1.20581 0.96075 1.03122 0.96177 1.19294 0.86452 0.96799 0.94277 1.86897 1.25356 1.75858 1.33290 1.23853 0.93723 0.98519 0.86364 1.21792 0.92471 0.99430 1.00774 0.95292 0.93053 0.91940 0.91850 0.93034 0.90756 0.90172 0.73800 0.83696 0.84900 0.85637 0.90469 0.87499 0.88972 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.57 37.16 0.32 -3.03 16 2 C 0.23 5.71 2.19 -69.08 -0.15 5.56 16 3 H 0.06 1.47 5.86 -51.93 -0.30 1.17 16 4 C -0.62 -17.21 8.20 -34.44 -0.28 -17.49 16 5 H 0.06 1.89 7.80 -52.49 -0.41 1.48 16 6 C 0.05 1.28 5.17 -17.82 -0.09 1.18 16 7 N -0.89 -26.40 13.70 55.43 0.76 -25.64 16 8 Si 1.03 24.75 26.20 -169.99 -4.45 20.30 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.27 -6.01 5.72 56.52 0.32 -5.69 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.55 -11.96 2.75 -175.81 -0.48 -12.44 16 13 C 0.08 1.61 8.07 59.85 0.48 2.09 16 14 C 0.49 10.32 7.72 -11.64 -0.09 10.23 16 15 O -0.53 -12.18 15.85 5.49 0.09 -12.09 16 16 C 0.51 9.03 7.42 -11.64 -0.09 8.94 16 17 O -0.50 -8.97 11.08 5.46 0.06 -8.91 16 18 N -0.65 -10.00 5.32 -10.11 -0.05 -10.05 16 19 C 0.14 1.94 6.30 -83.43 -0.53 1.42 16 20 C -0.09 -1.14 8.63 -39.47 -0.34 -1.48 16 21 C -0.13 -1.27 10.06 -39.55 -0.40 -1.67 16 22 C -0.09 -0.81 10.03 -39.67 -0.40 -1.20 16 23 C -0.16 -1.62 6.27 -104.12 -0.65 -2.28 16 24 C 0.08 1.01 6.95 -38.78 -0.27 0.74 16 25 O -0.30 -3.70 11.11 -20.35 -0.23 -3.93 16 26 C 0.05 0.38 8.01 38.05 0.30 0.69 16 27 C -0.11 -0.75 7.12 -26.52 -0.19 -0.94 16 28 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.05 1.06 7.50 -51.93 -0.39 0.67 16 30 H 0.06 1.38 4.73 -51.93 -0.25 1.13 16 31 H 0.27 8.00 8.73 -40.82 -0.36 7.65 16 32 H 0.05 0.89 8.08 -51.92 -0.42 0.47 16 33 H 0.07 1.38 6.03 -51.93 -0.31 1.07 16 34 H 0.08 1.62 7.17 -51.93 -0.37 1.24 16 35 H 0.42 6.27 8.33 -40.82 -0.34 5.93 16 36 H 0.15 1.96 6.39 -52.49 -0.34 1.63 16 37 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.11 0.59 8.14 -51.92 -0.42 0.16 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -32.36 344.10 -6.81 -39.17 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.32 Total: 5.65 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -2.37 Total: 2.76 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.22 Total: -48.14 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.08 Total: -24.93 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -4.45 Total: 20.30 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.36 -6.81 -39.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599969140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.575 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds