Wall clock time and date at job start Tue Mar 31 2020 12:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47365 * 2 1 4 4 C 1.50701 * 109.46623 * 119.99380 * 2 1 3 5 5 H 1.08002 * 119.99879 * 123.30394 * 4 2 1 6 6 C 1.37878 * 120.00492 * 303.30580 * 4 2 1 7 7 N 1.31508 * 120.00422 * 155.24139 * 6 4 2 8 8 Si 1.86807 * 119.99555 * 335.51330 * 6 4 2 9 9 H 1.48495 * 109.47129 * 269.72641 * 8 6 4 10 10 H 1.48498 * 109.46983 * 29.72332 * 8 6 4 11 11 H 1.48499 * 109.46942 * 149.72174 * 8 6 4 12 12 N 1.46498 * 109.47215 * 239.99071 * 2 1 3 13 13 C 1.46500 * 120.00247 * 300.00233 * 12 2 1 14 14 C 1.34780 * 119.99802 * 120.00591 * 12 2 1 15 15 O 1.21361 * 120.00084 * 5.54248 * 14 12 2 16 16 C 1.49335 * 119.99869 * 185.54947 * 14 12 2 17 17 O 1.21391 * 120.00069 * 6.25470 * 16 14 12 18 18 N 1.34773 * 119.99605 * 186.25763 * 16 14 12 19 19 C 1.39879 * 119.99851 * 185.43932 * 18 16 14 20 20 C 1.38613 * 119.94501 * 33.33193 * 19 18 16 21 21 C 1.38168 * 120.25930 * 179.79061 * 20 19 18 22 22 C 1.38402 * 119.83799 * 0.45112 * 21 20 19 23 23 C 1.37839 * 120.12580 * 359.62504 * 22 21 20 24 24 C 1.38723 * 120.83238 * 0.33328 * 23 22 21 25 25 O 1.36192 * 111.27460 * 179.30026 * 24 23 22 26 26 C 1.43772 * 109.23749 * 18.83718 * 25 24 23 27 27 C 1.51657 * 132.11944 * 180.56932 * 23 22 21 28 28 H 1.09008 * 109.46521 * 54.87292 * 1 2 3 29 29 H 1.08995 * 109.47466 * 174.86778 * 1 2 3 30 30 H 1.08997 * 109.47323 * 294.87264 * 1 2 3 31 31 H 0.97004 * 119.99723 * 355.25703 * 7 6 4 32 32 H 1.09010 * 109.46904 * 95.90763 * 13 12 2 33 33 H 1.08993 * 109.47325 * 215.90314 * 13 12 2 34 34 H 1.09003 * 109.47085 * 335.91016 * 13 12 2 35 35 H 0.96999 * 120.00421 * 5.44785 * 18 16 14 36 36 H 1.07997 * 119.86949 * 0.07025 * 20 19 18 37 37 H 1.08001 * 120.08059 * 180.12361 * 21 20 19 38 38 H 1.08000 * 119.93637 * 179.65581 * 22 21 20 39 39 H 1.08998 * 110.75288 * 90.68246 * 26 25 24 40 40 H 1.09010 * 110.75080 * 213.86098 * 26 25 24 41 41 H 1.09002 * 110.93885 * 46.11899 * 27 23 22 42 42 H 1.09001 * 110.97325 * 282.45590 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6964 -1.5563 1.1325 6 6 1.6439 -0.2803 2.4817 7 7 1.6490 -1.1175 3.4958 8 14 1.1031 1.4899 2.7346 9 1 2.2804 2.3206 3.0936 10 1 0.4968 2.0061 1.4812 11 1 0.1022 1.5499 3.8299 12 7 2.0184 -0.6908 -1.1960 13 6 1.6645 -2.0934 -1.4277 14 6 2.7934 -0.0359 -2.0832 15 8 3.1697 1.0926 -1.8433 16 6 3.1887 -0.6990 -3.3616 17 8 2.7217 -1.7806 -3.6541 18 7 4.0642 -0.0965 -4.1904 19 6 4.3480 -0.6611 -5.4383 20 6 3.3601 -1.3458 -6.1287 21 6 3.6321 -1.9024 -7.3637 22 6 4.8987 -1.7835 -7.9088 23 6 5.8850 -1.1049 -7.2255 24 6 5.6298 -0.5389 -5.9850 25 8 6.7400 0.0680 -5.4810 26 6 7.6711 0.3143 -6.5484 27 6 7.3328 -0.8043 -7.5621 28 1 -0.3633 0.5914 -0.8406 29 1 -0.3634 -1.0235 -0.0919 30 1 -0.3634 0.4322 0.9323 31 1 1.8595 -2.0533 3.3511 32 1 0.7975 -2.1453 -2.0865 33 1 2.5052 -2.6083 -1.8925 34 1 1.4272 -2.5701 -0.4766 35 1 4.4975 0.7287 -3.9216 36 1 2.3727 -1.4407 -5.7017 37 1 2.8597 -2.4336 -7.9001 38 1 5.1146 -2.2227 -8.8715 39 1 7.5033 1.2975 -6.9880 40 1 8.6979 0.2212 -6.1944 41 1 7.4279 -0.4436 -8.5863 42 1 7.9611 -1.6801 -7.3998 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599969140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:38 Heat of formation + Delta-G solvation = -74.237130 kcal Electronic energy + Delta-G solvation = -26563.153732 eV Core-core repulsion = 22701.755843 eV Total energy + Delta-G solvation = -3861.397889 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.51835 -41.73780 -40.00695 -38.34074 -37.67226 -36.13218 -34.82096 -33.03953 -32.16767 -30.67581 -29.98983 -27.99290 -26.95414 -26.25954 -24.44449 -23.42725 -23.19499 -21.73839 -20.80857 -19.56550 -19.24126 -18.47332 -18.33240 -17.87058 -17.24599 -17.11940 -16.93300 -16.41545 -15.88521 -15.82028 -15.44794 -15.12067 -14.62977 -14.48086 -14.29810 -14.10343 -13.97596 -13.90787 -13.82443 -13.51085 -13.39525 -13.19586 -12.78631 -12.71449 -12.51057 -12.42457 -12.24465 -12.00477 -11.87891 -11.51331 -11.50214 -11.29584 -10.52173 -10.46511 -9.76678 -9.46817 -9.01101 -8.79489 -6.41927 -0.13137 0.25404 0.53062 1.19853 1.47239 1.51178 1.71287 1.99399 2.22640 2.43710 2.44547 2.65636 2.94953 3.16132 3.45894 3.65088 3.99171 4.13317 4.18052 4.29392 4.33203 4.35387 4.45193 4.52341 4.54338 4.65989 4.68868 4.71363 4.86710 4.89649 4.93437 5.01163 5.03873 5.18567 5.22680 5.36159 5.44819 5.45833 5.62438 5.72387 5.86593 5.99143 6.10808 6.30757 6.46200 6.59802 6.84998 7.30323 8.53481 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024749 B = 0.003026 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.091902 B = 9249.666841 C = 9795.777426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.235 3.765 3 H 0.042 0.958 4 C -0.625 4.625 5 H 0.028 0.972 6 C 0.002 3.998 7 N -0.917 5.917 8 Si 1.072 2.928 9 H -0.281 1.281 10 H -0.243 1.243 11 H -0.276 1.276 12 N -0.559 5.559 13 C 0.092 3.908 14 C 0.490 3.510 15 O -0.558 6.558 16 C 0.516 3.484 17 O -0.506 6.506 18 N -0.636 5.636 19 C 0.101 3.899 20 C -0.104 4.104 21 C -0.123 4.123 22 C -0.077 4.077 23 C -0.160 4.160 24 C 0.063 3.937 25 O -0.329 6.329 26 C 0.040 3.960 27 C -0.100 4.100 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.259 0.741 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.424 0.576 36 H 0.132 0.868 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.089 0.911 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.622 0.468 -27.743 28.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.132 3.868 3 H 0.060 0.940 4 C -0.663 4.663 5 H 0.046 0.954 6 C -0.200 4.200 7 N -0.550 5.550 8 Si 0.893 3.107 9 H -0.207 1.207 10 H -0.167 1.167 11 H -0.201 1.201 12 N -0.289 5.289 13 C -0.050 4.050 14 C 0.272 3.728 15 O -0.439 6.439 16 C 0.298 3.702 17 O -0.381 6.381 18 N -0.282 5.282 19 C 0.008 3.992 20 C -0.124 4.124 21 C -0.142 4.142 22 C -0.095 4.095 23 C -0.161 4.161 24 C 0.016 3.984 25 O -0.243 6.243 26 C -0.034 4.034 27 C -0.137 4.137 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.262 0.738 36 H 0.150 0.850 37 H 0.178 0.822 38 H 0.180 0.820 39 H 0.108 0.892 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.014 1.411 -26.370 27.324 hybrid contribution 0.927 -1.090 -0.241 1.451 sum 7.941 0.321 -26.612 27.773 Atomic orbital electron populations 1.22326 0.95700 1.01634 1.00965 1.19203 0.92370 0.93566 0.81624 0.93992 1.22137 1.33632 1.17930 0.92583 0.95376 1.26914 0.93481 1.07758 0.91813 1.70938 1.44086 1.04913 1.35085 0.83791 0.77608 0.71694 0.77629 1.20707 1.16671 1.20092 1.47990 1.46391 1.13429 1.21060 1.21946 1.01863 0.79803 1.01374 1.20169 0.80829 0.86469 0.85316 1.90687 1.55357 1.19929 1.77900 1.20082 0.80276 0.85008 0.84801 1.90703 1.53333 1.19404 1.74635 1.43055 1.42614 1.27546 1.15006 1.17375 0.90900 1.04406 0.86566 1.21041 0.98124 0.98025 0.95242 1.21288 0.98161 1.00441 0.94281 1.20751 0.91064 0.97056 1.00652 1.21087 0.97978 1.02068 0.95016 1.19518 0.86188 0.97451 0.95277 1.86860 1.25877 1.75973 1.35635 1.24211 0.93773 0.99595 0.85800 1.21890 0.90202 0.99580 1.02036 0.92867 0.92414 0.92135 0.93188 0.90773 0.90388 0.91792 0.73829 0.85025 0.82217 0.81954 0.89244 0.85576 0.86051 0.87962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.27 8.57 71.98 0.62 -5.65 16 2 C 0.23 11.46 2.19 44.25 0.10 11.56 16 3 H 0.04 2.19 5.86 -2.39 -0.01 2.17 16 4 C -0.63 -35.40 8.20 25.60 0.21 -35.19 16 5 H 0.03 1.75 7.80 -2.91 -0.02 1.73 16 6 C 0.00 0.13 5.17 84.66 0.44 0.57 16 7 N -0.92 -55.89 13.70 21.45 0.29 -55.59 16 8 Si 1.07 49.68 26.20 68.60 1.80 51.48 16 9 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 10 H -0.24 -10.11 5.72 99.48 0.57 -9.54 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 12 N -0.56 -24.69 2.75 -828.50 -2.28 -26.97 16 13 C 0.09 3.56 8.07 127.77 1.03 4.59 16 14 C 0.49 20.79 7.72 87.23 0.67 21.46 16 15 O -0.56 -25.90 15.85 -3.28 -0.05 -25.95 16 16 C 0.52 18.58 7.42 87.23 0.65 19.23 16 17 O -0.51 -18.21 11.08 -3.38 -0.04 -18.25 16 18 N -0.64 -20.07 5.32 -304.23 -1.62 -21.69 16 19 C 0.10 2.83 6.30 38.35 0.24 3.08 16 20 C -0.10 -2.61 8.63 22.34 0.19 -2.41 16 21 C -0.12 -2.18 10.06 22.29 0.22 -1.95 16 22 C -0.08 -1.14 10.03 22.21 0.22 -0.92 16 23 C -0.16 -2.84 6.27 -19.54 -0.12 -2.96 16 24 C 0.06 1.55 6.95 22.79 0.16 1.71 16 25 O -0.33 -7.88 11.11 -95.74 -1.06 -8.94 16 26 C 0.04 0.52 8.01 72.56 0.58 1.10 16 27 C -0.10 -1.05 7.12 30.73 0.22 -0.83 16 28 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.06 2.33 7.50 -2.39 -0.02 2.31 16 30 H 0.06 2.57 4.73 -2.39 -0.01 2.55 16 31 H 0.26 15.94 8.73 -92.71 -0.81 15.13 16 32 H 0.07 2.51 8.08 -2.38 -0.02 2.49 16 33 H 0.08 2.94 6.03 -2.39 -0.01 2.93 16 34 H 0.06 2.65 7.17 -2.39 -0.02 2.63 16 35 H 0.42 12.99 8.33 -92.71 -0.77 12.22 16 36 H 0.13 3.57 6.39 -2.91 -0.02 3.55 16 37 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 38 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.13 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -72.37 344.10 2.59 -69.78 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.12 Total: 22.76 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 5.43 Total: 13.37 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -3.61 Total: -104.25 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -1.15 Total: -53.13 kcal Atomic # 14 Polarization: 49.68 SS G_CDS: 1.80 Total: 51.48 kcal Total: -72.37 2.59 -69.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599969140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.457 kcal (2) G-P(sol) polarization free energy of solvation -72.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds