Wall clock time and date at job start Tue Mar 31 2020 12:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47019 * 2 1 4 4 C 1.50699 * 109.47016 * 240.00371 * 2 1 3 5 5 H 1.08004 * 119.99719 * 239.99949 * 4 2 1 6 6 C 1.37872 * 120.00384 * 60.00252 * 4 2 1 7 7 N 1.31513 * 120.00491 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 119.99712 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.47221 * 270.00021 * 8 6 4 10 10 H 1.48500 * 109.47408 * 30.00092 * 8 6 4 11 11 H 1.48496 * 109.47277 * 150.00567 * 8 6 4 12 12 N 1.46497 * 109.47412 * 120.00405 * 2 1 3 13 13 C 1.46498 * 120.00281 * 59.99526 * 12 2 1 14 14 C 1.34779 * 120.00194 * 240.00309 * 12 2 1 15 15 O 1.21362 * 119.99749 * 356.44788 * 14 12 2 16 16 C 1.49329 * 120.00137 * 176.44916 * 14 12 2 17 17 O 1.21386 * 120.00209 * 5.93148 * 16 14 12 18 18 N 1.34782 * 120.00072 * 185.93616 * 16 14 12 19 19 C 1.39872 * 119.99965 * 175.32788 * 18 16 14 20 20 C 1.38609 * 119.94772 * 34.76602 * 19 18 16 21 21 C 1.38172 * 120.26224 * 179.82934 * 20 19 18 22 22 C 1.38404 * 119.83577 * 0.40820 * 21 20 19 23 23 C 1.37839 * 120.12365 * 359.65415 * 22 21 20 24 24 C 1.38719 * 120.83868 * 0.31851 * 23 22 21 25 25 O 1.36182 * 111.27873 * 179.30202 * 24 23 22 26 26 C 1.43772 * 109.23568 * 18.84579 * 25 24 23 27 27 C 1.51663 * 132.11320 * 180.56951 * 23 22 21 28 28 H 1.09003 * 109.47198 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47471 * 299.99770 * 1 2 3 30 30 H 1.09000 * 109.47236 * 60.00260 * 1 2 3 31 31 H 0.97001 * 120.00691 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47145 * 95.97759 * 13 12 2 33 33 H 1.08998 * 109.47988 * 215.97938 * 13 12 2 34 34 H 1.09006 * 109.46949 * 335.98252 * 13 12 2 35 35 H 0.97001 * 119.99404 * 355.33572 * 18 16 14 36 36 H 1.07998 * 119.87163 * 0.09126 * 20 19 18 37 37 H 1.08003 * 120.07960 * 180.10871 * 21 20 19 38 38 H 1.08001 * 119.93584 * 179.67058 * 22 21 20 39 39 H 1.09005 * 110.75613 * 90.67869 * 26 25 24 40 40 H 1.09007 * 110.75359 * 213.85685 * 26 25 24 41 41 H 1.08997 * 110.94182 * 46.11819 * 27 23 22 42 42 H 1.09000 * 110.96933 * 282.44162 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 2.1372 -0.8594 -3.5566 8 14 0.6248 1.2792 -2.6540 9 1 -0.8028 0.8728 -2.6998 10 1 0.8470 2.1766 -1.4919 11 1 0.9759 1.9952 -3.9067 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.1396 1.1058 1.8599 16 6 3.2255 -0.7146 3.3412 17 8 2.9708 -1.8885 3.5157 18 7 3.8985 -0.0238 4.2827 19 6 4.2178 -0.6316 5.5014 20 6 4.5302 -1.9814 5.5406 21 6 4.8501 -2.5876 6.7403 22 6 4.8502 -1.8452 7.9084 23 6 4.5390 -0.5028 7.8749 24 6 4.2160 0.1227 6.6796 25 8 3.9289 1.4398 6.8729 26 6 4.4668 1.8612 8.1379 27 6 4.4677 0.5521 8.9622 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.9026 -0.5282 -4.4376 32 1 2.4673 -2.7352 1.0654 33 1 1.5199 -2.2599 2.4953 34 1 0.7428 -2.3282 0.8954 35 1 4.1612 0.8948 4.1152 36 1 4.5276 -2.5608 4.6292 37 1 5.0947 -3.6392 6.7672 38 1 5.0948 -2.3186 8.8478 39 1 5.4807 2.2431 8.0185 40 1 3.8249 2.6114 8.5999 41 1 5.3414 0.5016 9.6120 42 1 3.5486 0.4551 9.5402 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599969141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:43 Heat of formation + Delta-G solvation = -40.900084 kcal Electronic energy + Delta-G solvation = -26564.552396 eV Core-core repulsion = 22704.600110 eV Total energy + Delta-G solvation = -3859.952286 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.53795 -40.48064 -38.56748 -37.32413 -36.03865 -34.87428 -32.70657 -32.25746 -30.46623 -29.79578 -29.16463 -26.39987 -25.35411 -24.82984 -23.67063 -22.52596 -22.08914 -20.49288 -19.35793 -17.91498 -17.58459 -17.17615 -16.80066 -16.35461 -16.25174 -15.96991 -15.62578 -15.29639 -14.98238 -14.48484 -13.94540 -13.72059 -13.38363 -13.26901 -13.18446 -13.00520 -12.89221 -12.43589 -12.28180 -12.20517 -12.00999 -11.95138 -11.82522 -11.43606 -11.21824 -11.13376 -10.80244 -10.72655 -10.40168 -10.17970 -9.67135 -9.39653 -8.90436 -8.67861 -8.60970 -8.10330 -7.86860 -6.17904 -4.19785 0.95631 1.10136 1.82739 2.59064 2.97194 3.20993 3.34510 3.35930 3.41267 3.64095 3.89338 4.10131 4.28224 4.31421 4.62223 4.64455 4.73034 4.97011 5.04715 5.12199 5.14563 5.26402 5.37231 5.42236 5.56712 5.88378 5.93475 6.00896 6.13107 6.15501 6.25951 6.27078 6.30799 6.39914 6.44396 6.57042 6.77232 6.87055 6.96798 7.11622 7.19467 7.52808 7.79756 8.03722 8.33893 8.53639 8.83931 9.41230 10.94641 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026225 B = 0.003018 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.435726 B = 9275.261176 C = 9908.089756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.226 3.774 3 H 0.066 0.934 4 C -0.530 4.530 5 H 0.081 0.919 6 C 0.077 3.923 7 N -0.892 5.892 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.263 1.263 11 H -0.293 1.293 12 N -0.546 5.546 13 C 0.072 3.928 14 C 0.497 3.503 15 O -0.534 6.534 16 C 0.511 3.489 17 O -0.499 6.499 18 N -0.646 5.646 19 C 0.134 3.866 20 C -0.088 4.088 21 C -0.128 4.128 22 C -0.086 4.086 23 C -0.160 4.160 24 C 0.080 3.920 25 O -0.300 6.300 26 C 0.050 3.950 27 C -0.107 4.107 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.054 0.946 31 H 0.267 0.733 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.424 0.576 36 H 0.152 0.848 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.295 0.367 25.547 25.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.125 3.875 3 H 0.083 0.917 4 C -0.568 4.568 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.188 1.188 11 H -0.220 1.220 12 N -0.276 5.276 13 C -0.071 4.071 14 C 0.277 3.723 15 O -0.413 6.413 16 C 0.295 3.705 17 O -0.374 6.374 18 N -0.293 5.293 19 C 0.039 3.961 20 C -0.108 4.108 21 C -0.146 4.146 22 C -0.105 4.105 23 C -0.162 4.162 24 C 0.033 3.967 25 O -0.214 6.214 26 C -0.025 4.025 27 C -0.144 4.144 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.262 0.738 36 H 0.170 0.830 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.110 0.890 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.113 0.301 25.101 25.437 hybrid contribution -0.421 1.099 -0.241 1.201 sum 3.691 1.399 24.860 25.171 Atomic orbital electron populations 1.22479 0.98510 1.01529 0.99544 1.19499 0.90367 0.95251 0.82370 0.91655 1.21103 1.33069 1.14416 0.88217 0.90091 1.24849 0.95615 0.96598 0.95529 1.69865 1.44964 1.40088 0.98002 0.86923 0.80492 0.83746 0.77603 1.20266 1.18764 1.22005 1.47857 1.45892 1.12730 1.21145 1.22204 1.01335 0.80750 1.02765 1.19574 0.81720 0.86688 0.84275 1.90726 1.55784 1.17767 1.77022 1.20786 0.77820 0.86897 0.84990 1.90638 1.52872 1.15396 1.78500 1.43157 1.54628 1.18119 1.13372 1.17088 1.04259 0.92641 0.82106 1.21190 0.97141 0.92236 1.00205 1.20977 1.01893 1.00194 0.91568 1.20318 0.99658 0.91714 0.98770 1.20570 1.06634 0.95456 0.93511 1.19320 0.99766 0.84806 0.92833 1.86892 1.72868 1.22047 1.39613 1.23850 1.00080 0.96960 0.81579 1.21787 1.03963 0.91699 0.97001 0.92140 0.94595 0.92787 0.92309 0.92437 0.89183 0.91057 0.73787 0.83030 0.84877 0.85677 0.90473 0.87540 0.88994 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 8.66 37.16 0.32 -3.17 16 2 C 0.23 5.47 2.22 -69.09 -0.15 5.32 16 3 H 0.07 1.71 5.96 -51.93 -0.31 1.40 16 4 C -0.53 -14.71 8.95 -34.44 -0.31 -15.02 16 5 H 0.08 2.43 7.89 -52.48 -0.41 2.02 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -26.79 13.96 55.43 0.77 -26.02 16 8 Si 0.88 21.57 24.37 -169.99 -4.14 17.43 16 9 H -0.28 -6.44 6.87 56.52 0.39 -6.05 16 10 H -0.26 -6.29 6.53 56.52 0.37 -5.92 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 N -0.55 -11.72 2.75 -175.82 -0.48 -12.20 16 13 C 0.07 1.33 8.75 59.85 0.52 1.86 16 14 C 0.50 10.21 7.73 -11.64 -0.09 10.12 16 15 O -0.53 -12.08 15.82 5.49 0.09 -11.99 16 16 C 0.51 8.86 7.61 -11.64 -0.09 8.77 16 17 O -0.50 -8.67 10.54 5.47 0.06 -8.61 16 18 N -0.65 -9.75 5.33 -10.11 -0.05 -9.81 16 19 C 0.13 1.85 6.33 -83.43 -0.53 1.32 16 20 C -0.09 -1.12 8.67 -39.47 -0.34 -1.46 16 21 C -0.13 -1.28 10.06 -39.54 -0.40 -1.68 16 22 C -0.09 -0.78 10.03 -39.67 -0.40 -1.18 16 23 C -0.16 -1.61 6.27 -104.12 -0.65 -2.26 16 24 C 0.08 1.00 6.96 -38.78 -0.27 0.73 16 25 O -0.30 -3.59 11.11 -20.32 -0.23 -3.82 16 26 C 0.05 0.37 8.01 38.05 0.30 0.67 16 27 C -0.11 -0.73 7.12 -26.51 -0.19 -0.92 16 28 H 0.06 1.21 6.67 -51.93 -0.35 0.87 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 1.20 3.27 -51.93 -0.17 1.03 16 31 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.53 5.36 -51.94 -0.28 1.26 16 34 H 0.07 1.28 6.44 -51.93 -0.33 0.94 16 35 H 0.42 6.12 8.30 -40.82 -0.34 5.78 16 36 H 0.15 2.07 6.17 -52.49 -0.32 1.75 16 37 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 340.54 15.07 5.13 5.13 Total: -1.00 -32.72 340.54 -6.30 -39.02 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.08 Total: 5.67 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -2.36 Total: 5.20 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.24 Total: -48.02 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.08 Total: -24.42 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.14 Total: 17.43 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.72 -6.30 -39.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599969141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.879 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds