Wall clock time and date at job start Tue Mar 31 2020 12:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47019 * 2 1 4 4 C 1.50699 * 109.47016 * 240.00371 * 2 1 3 5 5 H 1.08004 * 119.99719 * 239.99949 * 4 2 1 6 6 C 1.37872 * 120.00384 * 60.00252 * 4 2 1 7 7 N 1.31513 * 120.00491 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 119.99712 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.47221 * 270.00021 * 8 6 4 10 10 H 1.48500 * 109.47408 * 30.00092 * 8 6 4 11 11 H 1.48496 * 109.47277 * 150.00567 * 8 6 4 12 12 N 1.46497 * 109.47412 * 120.00405 * 2 1 3 13 13 C 1.46498 * 120.00281 * 59.99526 * 12 2 1 14 14 C 1.34779 * 120.00194 * 240.00309 * 12 2 1 15 15 O 1.21362 * 119.99749 * 356.44788 * 14 12 2 16 16 C 1.49329 * 120.00137 * 176.44916 * 14 12 2 17 17 O 1.21386 * 120.00209 * 5.93148 * 16 14 12 18 18 N 1.34782 * 120.00072 * 185.93616 * 16 14 12 19 19 C 1.39872 * 119.99965 * 175.32788 * 18 16 14 20 20 C 1.38609 * 119.94772 * 34.76602 * 19 18 16 21 21 C 1.38172 * 120.26224 * 179.82934 * 20 19 18 22 22 C 1.38404 * 119.83577 * 0.40820 * 21 20 19 23 23 C 1.37839 * 120.12365 * 359.65415 * 22 21 20 24 24 C 1.38719 * 120.83868 * 0.31851 * 23 22 21 25 25 O 1.36182 * 111.27873 * 179.30202 * 24 23 22 26 26 C 1.43772 * 109.23568 * 18.84579 * 25 24 23 27 27 C 1.51663 * 132.11320 * 180.56951 * 23 22 21 28 28 H 1.09003 * 109.47198 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47471 * 299.99770 * 1 2 3 30 30 H 1.09000 * 109.47236 * 60.00260 * 1 2 3 31 31 H 0.97001 * 120.00691 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47145 * 95.97759 * 13 12 2 33 33 H 1.08998 * 109.47988 * 215.97938 * 13 12 2 34 34 H 1.09006 * 109.46949 * 335.98252 * 13 12 2 35 35 H 0.97001 * 119.99404 * 355.33572 * 18 16 14 36 36 H 1.07998 * 119.87163 * 0.09126 * 20 19 18 37 37 H 1.08003 * 120.07960 * 180.10871 * 21 20 19 38 38 H 1.08001 * 119.93584 * 179.67058 * 22 21 20 39 39 H 1.09005 * 110.75613 * 90.67869 * 26 25 24 40 40 H 1.09007 * 110.75359 * 213.85685 * 26 25 24 41 41 H 1.08997 * 110.94182 * 46.11819 * 27 23 22 42 42 H 1.09000 * 110.96933 * 282.44162 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 2.1372 -0.8594 -3.5566 8 14 0.6248 1.2792 -2.6540 9 1 -0.8028 0.8728 -2.6998 10 1 0.8470 2.1766 -1.4919 11 1 0.9759 1.9952 -3.9067 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.1396 1.1058 1.8599 16 6 3.2255 -0.7146 3.3412 17 8 2.9708 -1.8885 3.5157 18 7 3.8985 -0.0238 4.2827 19 6 4.2178 -0.6316 5.5014 20 6 4.5302 -1.9814 5.5406 21 6 4.8501 -2.5876 6.7403 22 6 4.8502 -1.8452 7.9084 23 6 4.5390 -0.5028 7.8749 24 6 4.2160 0.1227 6.6796 25 8 3.9289 1.4398 6.8729 26 6 4.4668 1.8612 8.1379 27 6 4.4677 0.5521 8.9622 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.9026 -0.5282 -4.4376 32 1 2.4673 -2.7352 1.0654 33 1 1.5199 -2.2599 2.4953 34 1 0.7428 -2.3282 0.8954 35 1 4.1612 0.8948 4.1152 36 1 4.5276 -2.5608 4.6292 37 1 5.0947 -3.6392 6.7672 38 1 5.0948 -2.3186 8.8478 39 1 5.4807 2.2431 8.0185 40 1 3.8249 2.6114 8.5999 41 1 5.3414 0.5016 9.6120 42 1 3.5486 0.4551 9.5402 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599969141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:42 Heat of formation + Delta-G solvation = -64.182943 kcal Electronic energy + Delta-G solvation = -26565.562017 eV Core-core repulsion = 22704.600110 eV Total energy + Delta-G solvation = -3860.961907 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.50930 -41.73198 -40.00618 -38.32104 -37.68370 -36.11644 -34.71900 -33.02164 -32.35479 -30.65076 -29.97725 -27.97216 -27.25053 -26.37618 -24.45730 -23.40681 -23.25313 -21.79122 -20.84378 -19.28801 -18.83502 -18.50420 -18.24305 -17.71697 -17.36036 -17.18127 -16.88395 -16.80300 -16.08890 -15.81330 -15.42353 -15.06744 -14.85509 -14.45849 -14.19942 -14.10108 -14.00906 -13.94823 -13.85117 -13.65247 -13.46866 -13.10387 -12.76655 -12.71751 -12.62595 -12.35244 -12.21879 -12.07824 -11.84297 -11.57354 -11.44955 -11.42617 -10.83116 -10.39587 -9.67247 -9.44714 -8.99511 -8.37481 -6.44474 -0.09806 0.27715 0.52704 1.21625 1.27101 1.36148 1.44899 2.01096 2.24375 2.26200 2.46510 2.67080 2.96757 3.18105 3.48089 3.67314 4.01608 4.15426 4.19888 4.29703 4.36365 4.37847 4.38320 4.48952 4.54538 4.60703 4.67840 4.78301 4.89139 4.92351 4.93984 4.98429 5.06894 5.20125 5.22551 5.33718 5.41097 5.48522 5.52501 5.64887 5.83647 6.10486 6.13537 6.36588 6.56191 6.61257 6.85440 7.21362 8.78666 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026225 B = 0.003018 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.435726 B = 9275.261176 C = 9908.089756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.228 3.772 3 H 0.044 0.956 4 C -0.533 4.533 5 H 0.042 0.958 6 C 0.025 3.975 7 N -0.938 5.938 8 Si 0.943 3.057 9 H -0.251 1.251 10 H -0.256 1.256 11 H -0.294 1.294 12 N -0.556 5.556 13 C 0.078 3.922 14 C 0.491 3.509 15 O -0.560 6.560 16 C 0.518 3.482 17 O -0.503 6.503 18 N -0.635 5.635 19 C 0.099 3.901 20 C -0.105 4.105 21 C -0.126 4.126 22 C -0.076 4.076 23 C -0.161 4.161 24 C 0.066 3.934 25 O -0.327 6.327 26 C 0.040 3.960 27 C -0.100 4.100 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.270 0.730 32 H 0.046 0.954 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.424 0.576 36 H 0.135 0.865 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.088 0.912 40 H 0.128 0.872 41 H 0.120 0.880 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.635 0.792 29.070 29.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.126 3.874 3 H 0.062 0.938 4 C -0.572 4.572 5 H 0.060 0.940 6 C -0.175 4.175 7 N -0.577 5.577 8 Si 0.769 3.231 9 H -0.176 1.176 10 H -0.180 1.180 11 H -0.221 1.221 12 N -0.286 5.286 13 C -0.064 4.064 14 C 0.274 3.726 15 O -0.441 6.441 16 C 0.301 3.699 17 O -0.379 6.379 18 N -0.281 5.281 19 C 0.005 3.995 20 C -0.125 4.125 21 C -0.144 4.144 22 C -0.094 4.094 23 C -0.163 4.163 24 C 0.019 3.981 25 O -0.242 6.242 26 C -0.034 4.034 27 C -0.137 4.137 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.127 0.873 34 H 0.096 0.904 35 H 0.262 0.738 36 H 0.153 0.847 37 H 0.176 0.824 38 H 0.180 0.820 39 H 0.106 0.894 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.461 0.710 28.683 28.900 hybrid contribution -0.062 0.928 -1.188 1.509 sum 3.399 1.638 27.495 27.753 Atomic orbital electron populations 1.22353 0.95822 1.02714 1.00540 1.19241 0.92375 0.93768 0.82024 0.93771 1.21274 1.32386 1.13346 0.90163 0.93955 1.25674 0.97046 0.99705 0.95029 1.70000 1.46821 1.42146 0.98704 0.85945 0.79805 0.79813 0.77509 1.17646 1.18045 1.22105 1.47896 1.46327 1.13718 1.20677 1.22273 1.01097 0.79059 1.03952 1.20151 0.80835 0.86495 0.85155 1.90694 1.56507 1.18991 1.77868 1.20048 0.78664 0.86775 0.84416 1.90624 1.53639 1.15205 1.78433 1.43015 1.53579 1.17890 1.13586 1.17358 1.06851 0.93492 0.81763 1.21186 0.98451 0.91943 1.00872 1.21301 1.00792 1.01476 0.90854 1.20750 0.97554 0.91321 0.99770 1.21078 1.05174 0.96371 0.93670 1.19511 1.00033 0.85406 0.93170 1.86859 1.73427 1.21945 1.41931 1.24209 1.01137 0.97940 0.80088 1.21888 1.05867 0.89678 0.96255 0.90956 0.92050 0.93179 0.92044 0.93496 0.87345 0.90434 0.73784 0.84715 0.82406 0.82035 0.89406 0.85445 0.86204 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.48 8.66 71.98 0.62 -5.85 16 2 C 0.23 11.13 2.22 44.24 0.10 11.23 16 3 H 0.04 2.35 5.96 -2.38 -0.01 2.33 16 4 C -0.53 -30.52 8.95 25.60 0.23 -30.29 16 5 H 0.04 2.68 7.89 -2.91 -0.02 2.66 16 6 C 0.02 1.42 5.45 84.65 0.46 1.89 16 7 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16 8 Si 0.94 44.42 24.37 68.60 1.67 46.09 16 9 H -0.25 -10.81 6.87 99.48 0.68 -10.12 16 10 H -0.26 -11.70 6.53 99.48 0.65 -11.05 16 11 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 12 N -0.56 -24.27 2.75 -828.52 -2.28 -26.55 16 13 C 0.08 2.91 8.75 127.77 1.12 4.03 16 14 C 0.49 20.70 7.73 87.23 0.67 21.38 16 15 O -0.56 -26.07 15.82 -3.29 -0.05 -26.12 16 16 C 0.52 18.39 7.61 87.23 0.66 19.05 16 17 O -0.50 -17.73 10.54 -3.36 -0.04 -17.76 16 18 N -0.63 -19.67 5.33 -304.23 -1.62 -21.29 16 19 C 0.10 2.73 6.33 38.35 0.24 2.97 16 20 C -0.10 -2.63 8.67 22.34 0.19 -2.44 16 21 C -0.13 -2.25 10.06 22.29 0.22 -2.02 16 22 C -0.08 -1.11 10.03 22.21 0.22 -0.89 16 23 C -0.16 -2.79 6.27 -19.54 -0.12 -2.91 16 24 C 0.07 1.58 6.96 22.79 0.16 1.73 16 25 O -0.33 -7.49 11.11 -95.62 -1.06 -8.56 16 26 C 0.04 0.49 8.01 72.56 0.58 1.07 16 27 C -0.10 -0.98 7.12 30.74 0.22 -0.76 16 28 H 0.07 2.79 6.67 -2.39 -0.02 2.77 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.05 2.10 3.27 -2.39 -0.01 2.10 16 31 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.11 3.67 5.36 -2.47 -0.01 3.65 16 34 H 0.08 2.76 6.44 -2.38 -0.02 2.75 16 35 H 0.42 12.76 8.30 -92.71 -0.77 11.99 16 36 H 0.14 3.78 6.17 -2.91 -0.02 3.76 16 37 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 39 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.13 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -73.58 340.54 2.74 -70.85 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.23 Total: 22.73 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 5.59 Total: 18.19 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -3.60 Total: -105.42 kcal Atomic # 8 Polarization: -51.29 SS G_CDS: -1.15 Total: -52.44 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.67 Total: 46.09 kcal Total: -73.58 2.74 -70.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599969141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.665 kcal (2) G-P(sol) polarization free energy of solvation -73.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds