Wall clock time and date at job start Tue Mar 31 2020 13:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47346 * 2 1 4 4 C 1.46498 * 119.99786 * 274.81867 * 3 2 1 5 5 C 1.50700 * 109.47119 * 263.65970 * 4 3 2 6 6 H 1.07999 * 119.99895 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00294 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00425 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99815 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47357 * 90.00060 * 9 7 5 11 11 H 1.48504 * 109.47147 * 210.00141 * 9 7 5 12 12 H 1.48500 * 109.47161 * 329.99891 * 9 7 5 13 13 C 1.34776 * 120.00245 * 94.81580 * 3 2 1 14 14 O 1.21360 * 119.99784 * 354.62540 * 13 3 2 15 15 C 1.49333 * 119.99804 * 174.62486 * 13 3 2 16 16 O 1.21387 * 120.00126 * 0.24821 * 15 13 3 17 17 N 1.34775 * 119.99825 * 180.25327 * 15 13 3 18 18 C 1.39880 * 119.99931 * 184.82541 * 17 15 13 19 19 C 1.38609 * 119.95066 * 326.21082 * 18 17 15 20 20 C 1.38160 * 120.25974 * 179.97438 * 19 18 17 21 21 C 1.38398 * 119.84282 * 0.21910 * 20 19 18 22 22 C 1.37848 * 120.12625 * 359.97438 * 21 20 19 23 23 C 1.38722 * 120.82162 * 359.59673 * 22 21 20 24 24 O 1.36194 * 111.25318 * 181.06462 * 23 22 21 25 25 C 1.43780 * 109.18228 * 340.65461 * 24 23 22 26 26 C 1.51658 * 132.12254 * 179.10921 * 22 21 20 27 27 H 1.09003 * 109.46677 * 59.99955 * 1 2 3 28 28 H 1.08999 * 109.47059 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46817 * 300.00479 * 1 2 3 30 30 H 1.08994 * 109.47500 * 239.99423 * 2 1 3 31 31 H 1.09008 * 109.46622 * 119.99565 * 2 1 3 32 32 H 1.09005 * 109.47208 * 23.65042 * 4 3 2 33 33 H 1.08989 * 109.47320 * 143.65762 * 4 3 2 34 34 H 0.96996 * 120.00221 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00269 * 4.81803 * 17 15 13 36 36 H 1.08001 * 119.86860 * 359.97438 * 19 18 17 37 37 H 1.08001 * 120.08152 * 180.23661 * 20 19 18 38 38 H 1.08003 * 119.93953 * 180.02562 * 21 20 19 39 39 H 1.08993 * 110.75691 * 269.54284 * 25 24 23 40 40 H 1.09006 * 110.91151 * 146.24776 * 25 24 23 41 41 H 1.09001 * 110.93155 * 313.72728 * 26 22 21 42 42 H 1.08996 * 110.93093 * 77.35788 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1621 2.1073 -1.2643 5 6 3.5896 2.0131 -1.7382 6 1 4.3170 1.4673 -1.1557 7 6 3.9671 2.6245 -2.9149 8 7 5.2129 2.5427 -3.3283 9 14 2.7090 3.5690 -3.9220 10 1 2.6867 4.9873 -3.4823 11 1 3.0748 3.5022 -5.3598 12 1 1.3652 2.9685 -3.7248 13 6 2.3355 1.9839 1.1630 14 8 2.1250 1.4190 2.2163 15 6 2.9457 3.3469 1.1556 16 8 3.1520 3.9138 0.1022 17 7 3.2675 3.9475 2.3184 18 6 3.7447 5.2623 2.3178 19 6 4.5279 5.7138 1.2671 20 6 5.0022 7.0114 1.2598 21 6 4.6976 7.8620 2.3081 22 6 3.9224 7.4167 3.3575 23 6 3.4302 6.1199 3.3773 24 8 2.6732 5.8961 4.4872 25 6 2.9880 6.8861 5.4812 26 6 3.4456 8.0930 4.6284 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5014 1.6689 -2.0122 33 1 1.8974 3.1539 -1.1143 34 1 5.4784 2.9725 -4.1563 35 1 3.1680 3.4680 3.1558 36 1 4.7683 5.0486 0.4510 37 1 5.6091 7.3613 0.4377 38 1 5.0672 8.8768 2.3038 39 1 3.7952 6.5415 6.1275 40 1 2.1063 7.1409 6.0694 41 1 4.2618 8.6267 5.1153 42 1 2.6116 8.7641 4.4231 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599972419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:36 Heat of formation + Delta-G solvation = -48.049651 kcal Electronic energy + Delta-G solvation = -27118.911484 eV Core-core repulsion = 23258.649170 eV Total energy + Delta-G solvation = -3860.262315 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25398 -40.20523 -38.39476 -36.99224 -35.82994 -34.41981 -32.57778 -32.00500 -30.68697 -29.49973 -28.88657 -27.68324 -25.01702 -23.54438 -22.75709 -22.30908 -22.21216 -20.69411 -19.21286 -17.65714 -17.31385 -17.05070 -16.75311 -16.24263 -16.09913 -15.70929 -15.16781 -14.91484 -14.75787 -14.13348 -13.87687 -13.62458 -13.42634 -13.18124 -13.10297 -12.84511 -12.67085 -12.46403 -12.16962 -12.02534 -11.83838 -11.74511 -11.68490 -11.28702 -11.01229 -10.88642 -10.68126 -10.66169 -10.39951 -10.19563 -10.07031 -9.51699 -8.72699 -8.50515 -8.28574 -7.95006 -7.73435 -6.05769 -4.02729 1.29494 1.39927 2.12202 2.85415 3.20084 3.32281 3.36997 3.40455 3.68705 3.93531 4.03257 4.31755 4.43389 4.49804 4.80345 4.89365 4.98128 5.24159 5.26971 5.28296 5.38384 5.46628 5.52384 5.61235 5.61632 5.68165 5.72549 5.90317 6.10037 6.20428 6.26481 6.30372 6.46774 6.48004 6.57089 6.66599 6.78521 6.92009 7.13676 7.28349 7.51482 7.58595 7.90027 8.25338 8.48167 8.62885 8.94530 9.54858 11.07500 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013003 B = 0.004732 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.894426 B = 5916.112351 C = 7536.695856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.110 3.890 3 N -0.555 5.555 4 C 0.198 3.802 5 C -0.513 4.513 6 H 0.072 0.928 7 C 0.081 3.919 8 N -0.898 5.898 9 Si 0.873 3.127 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.268 1.268 13 C 0.511 3.489 14 O -0.554 6.554 15 C 0.493 3.507 16 O -0.441 6.441 17 N -0.655 5.655 18 C 0.143 3.857 19 C -0.089 4.089 20 C -0.124 4.124 21 C -0.091 4.091 22 C -0.163 4.163 23 C 0.072 3.928 24 O -0.302 6.302 25 C 0.051 3.949 26 C -0.106 4.106 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.030 0.970 33 H 0.056 0.944 34 H 0.263 0.737 35 H 0.418 0.582 36 H 0.161 0.839 37 H 0.133 0.867 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.384 8.505 14.013 16.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.286 5.286 4 C 0.078 3.922 5 C -0.552 4.552 6 H 0.090 0.910 7 C -0.122 4.122 8 N -0.537 5.537 9 Si 0.700 3.300 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.193 1.193 13 C 0.294 3.706 14 O -0.435 6.435 15 C 0.275 3.725 16 O -0.309 6.309 17 N -0.303 5.303 18 C 0.047 3.953 19 C -0.109 4.109 20 C -0.143 4.143 21 C -0.110 4.110 22 C -0.164 4.164 23 C 0.025 3.975 24 O -0.216 6.216 25 C -0.024 4.024 26 C -0.143 4.143 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.255 0.745 36 H 0.178 0.822 37 H 0.151 0.849 38 H 0.141 0.859 39 H 0.093 0.907 40 H 0.122 0.878 41 H 0.108 0.892 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.447 8.418 13.597 16.599 hybrid contribution -0.451 0.503 -0.238 0.716 sum -4.898 8.922 13.359 16.794 Atomic orbital electron populations 1.22121 0.96234 1.01748 1.02191 1.21468 0.93863 0.82450 1.03433 1.47935 1.59564 1.13540 1.07511 1.20304 0.98805 0.93165 0.79908 1.21083 0.92977 1.33873 1.07222 0.90982 1.24707 0.94969 0.95367 0.97119 1.69889 1.16470 1.44508 1.22794 0.86903 0.82151 0.81511 0.79386 1.19781 1.21375 1.19269 1.19710 0.80031 0.86454 0.84448 1.90664 1.55610 1.66338 1.30842 1.20350 0.80506 0.87820 0.83822 1.90900 1.47189 1.63769 1.29066 1.43098 1.64447 1.12184 1.10589 1.17076 0.98799 0.83703 0.95677 1.21424 0.94193 0.97333 0.97914 1.21011 1.01386 0.93386 0.98529 1.20281 0.98035 0.99837 0.92823 1.20509 1.03551 0.93634 0.98702 1.19274 0.95235 0.92831 0.90200 1.86871 1.57991 1.53592 1.23156 1.23796 1.01656 0.86336 0.90648 1.21756 1.01762 0.98116 0.92692 0.92426 0.91833 0.92597 0.89692 0.90226 0.95173 0.92631 0.92679 0.74513 0.82171 0.84947 0.85933 0.90705 0.87796 0.89221 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 10.24 37.16 0.38 -2.03 16 2 C 0.11 1.92 6.11 -4.04 -0.02 1.90 16 3 N -0.56 -11.67 2.47 -175.61 -0.43 -12.10 16 4 C 0.20 4.66 3.85 -5.19 -0.02 4.64 16 5 C -0.51 -14.07 8.34 -34.44 -0.29 -14.36 16 6 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 7 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 8 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 9 Si 0.87 21.31 27.47 -169.99 -4.67 16.64 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 13 C 0.51 10.77 7.67 -11.64 -0.09 10.68 16 14 O -0.55 -11.66 16.04 5.49 0.09 -11.57 16 15 C 0.49 10.27 7.57 -11.64 -0.09 10.18 16 16 O -0.44 -10.28 9.45 5.46 0.05 -10.23 16 17 N -0.65 -11.75 5.33 -10.11 -0.05 -11.80 16 18 C 0.14 2.45 6.35 -83.43 -0.53 1.92 16 19 C -0.09 -1.55 8.68 -39.47 -0.34 -1.89 16 20 C -0.12 -1.79 10.06 -39.55 -0.40 -2.18 16 21 C -0.09 -1.13 10.03 -39.67 -0.40 -1.53 16 22 C -0.16 -2.07 6.27 -104.11 -0.65 -2.73 16 23 C 0.07 1.08 6.95 -38.79 -0.27 0.81 16 24 O -0.30 -4.18 11.11 -20.36 -0.23 -4.41 16 25 C 0.05 0.46 8.01 38.05 0.30 0.76 16 26 C -0.11 -0.94 7.12 -26.52 -0.19 -1.13 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 31 H 0.08 1.36 7.36 -51.92 -0.38 0.98 16 32 H 0.03 0.69 7.08 -51.93 -0.37 0.32 16 33 H 0.06 1.36 5.27 -51.93 -0.27 1.08 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.42 6.86 8.30 -40.82 -0.34 6.53 16 36 H 0.16 3.26 6.09 -52.49 -0.32 2.94 16 37 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 350.98 15.07 5.29 5.29 Total: -1.00 -32.63 350.98 -7.38 -40.01 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.50 Total: 7.13 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -2.70 Total: 7.23 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.29 Total: -50.08 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.09 Total: -26.21 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.63 -7.38 -40.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599972419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.042 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds