Wall clock time and date at job start Tue Mar 31 2020 13:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47346 * 2 1 4 4 C 1.46498 * 119.99786 * 274.81867 * 3 2 1 5 5 C 1.50700 * 109.47119 * 263.65970 * 4 3 2 6 6 H 1.07999 * 119.99895 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00294 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00425 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99815 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47357 * 90.00060 * 9 7 5 11 11 H 1.48504 * 109.47147 * 210.00141 * 9 7 5 12 12 H 1.48500 * 109.47161 * 329.99891 * 9 7 5 13 13 C 1.34776 * 120.00245 * 94.81580 * 3 2 1 14 14 O 1.21360 * 119.99784 * 354.62540 * 13 3 2 15 15 C 1.49333 * 119.99804 * 174.62486 * 13 3 2 16 16 O 1.21387 * 120.00126 * 0.24821 * 15 13 3 17 17 N 1.34775 * 119.99825 * 180.25327 * 15 13 3 18 18 C 1.39880 * 119.99931 * 184.82541 * 17 15 13 19 19 C 1.38609 * 119.95066 * 326.21082 * 18 17 15 20 20 C 1.38160 * 120.25974 * 179.97438 * 19 18 17 21 21 C 1.38398 * 119.84282 * 0.21910 * 20 19 18 22 22 C 1.37848 * 120.12625 * 359.97438 * 21 20 19 23 23 C 1.38722 * 120.82162 * 359.59673 * 22 21 20 24 24 O 1.36194 * 111.25318 * 181.06462 * 23 22 21 25 25 C 1.43780 * 109.18228 * 340.65461 * 24 23 22 26 26 C 1.51658 * 132.12254 * 179.10921 * 22 21 20 27 27 H 1.09003 * 109.46677 * 59.99955 * 1 2 3 28 28 H 1.08999 * 109.47059 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46817 * 300.00479 * 1 2 3 30 30 H 1.08994 * 109.47500 * 239.99423 * 2 1 3 31 31 H 1.09008 * 109.46622 * 119.99565 * 2 1 3 32 32 H 1.09005 * 109.47208 * 23.65042 * 4 3 2 33 33 H 1.08989 * 109.47320 * 143.65762 * 4 3 2 34 34 H 0.96996 * 120.00221 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00269 * 4.81803 * 17 15 13 36 36 H 1.08001 * 119.86860 * 359.97438 * 19 18 17 37 37 H 1.08001 * 120.08152 * 180.23661 * 20 19 18 38 38 H 1.08003 * 119.93953 * 180.02562 * 21 20 19 39 39 H 1.08993 * 110.75691 * 269.54284 * 25 24 23 40 40 H 1.09006 * 110.91151 * 146.24776 * 25 24 23 41 41 H 1.09001 * 110.93155 * 313.72728 * 26 22 21 42 42 H 1.08996 * 110.93093 * 77.35788 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1621 2.1073 -1.2643 5 6 3.5896 2.0131 -1.7382 6 1 4.3170 1.4673 -1.1557 7 6 3.9671 2.6245 -2.9149 8 7 5.2129 2.5427 -3.3283 9 14 2.7090 3.5690 -3.9220 10 1 2.6867 4.9873 -3.4823 11 1 3.0748 3.5022 -5.3598 12 1 1.3652 2.9685 -3.7248 13 6 2.3355 1.9839 1.1630 14 8 2.1250 1.4190 2.2163 15 6 2.9457 3.3469 1.1556 16 8 3.1520 3.9138 0.1022 17 7 3.2675 3.9475 2.3184 18 6 3.7447 5.2623 2.3178 19 6 4.5279 5.7138 1.2671 20 6 5.0022 7.0114 1.2598 21 6 4.6976 7.8620 2.3081 22 6 3.9224 7.4167 3.3575 23 6 3.4302 6.1199 3.3773 24 8 2.6732 5.8961 4.4872 25 6 2.9880 6.8861 5.4812 26 6 3.4456 8.0930 4.6284 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5014 1.6689 -2.0122 33 1 1.8974 3.1539 -1.1143 34 1 5.4784 2.9725 -4.1563 35 1 3.1680 3.4680 3.1558 36 1 4.7683 5.0486 0.4510 37 1 5.6091 7.3613 0.4377 38 1 5.0672 8.8768 2.3038 39 1 3.7952 6.5415 6.1275 40 1 2.1063 7.1409 6.0694 41 1 4.2618 8.6267 5.1153 42 1 2.6116 8.7641 4.4231 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599972419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:35 Heat of formation + Delta-G solvation = -70.329714 kcal Electronic energy + Delta-G solvation = -27119.877620 eV Core-core repulsion = 23258.649170 eV Total energy + Delta-G solvation = -3861.228451 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.43186 -41.66184 -39.89357 -38.26223 -37.45100 -35.83523 -34.65545 -32.99324 -32.22864 -30.62503 -29.98954 -29.57587 -26.49304 -24.64472 -24.51442 -23.59569 -23.35200 -21.96404 -20.73554 -19.17064 -19.07258 -18.42290 -18.20863 -17.65118 -17.18907 -16.99024 -16.74596 -16.44163 -16.08618 -15.85338 -15.32918 -15.16114 -14.74132 -14.45384 -14.39690 -14.07287 -13.93841 -13.87115 -13.76539 -13.48479 -13.24010 -12.83340 -12.73123 -12.65875 -12.56025 -12.30239 -12.17270 -12.07884 -11.89156 -11.81676 -11.66607 -11.40124 -10.75396 -10.27759 -9.68751 -9.42900 -8.95617 -8.24673 -6.25879 0.00937 0.27171 0.58508 1.32557 1.39178 1.41788 1.47079 2.14650 2.25165 2.37814 2.49620 2.68122 3.12678 3.30772 3.48530 3.69187 4.03638 4.11026 4.18885 4.22265 4.30707 4.36974 4.40080 4.46467 4.59215 4.65893 4.74404 4.88015 4.89089 4.91869 4.95393 5.00038 5.07661 5.24098 5.28437 5.40804 5.45801 5.49915 5.53727 5.64626 6.00589 6.08596 6.16426 6.35975 6.69668 6.71360 6.99046 7.35284 8.92383 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013003 B = 0.004732 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.894426 B = 5916.112351 C = 7536.695856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.102 3.898 3 N -0.561 5.561 4 C 0.211 3.789 5 C -0.507 4.507 6 H 0.026 0.974 7 C 0.025 3.975 8 N -0.946 5.946 9 Si 0.936 3.064 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.240 1.240 13 C 0.507 3.493 14 O -0.556 6.556 15 C 0.489 3.511 16 O -0.475 6.475 17 N -0.642 5.642 18 C 0.109 3.891 19 C -0.114 4.114 20 C -0.131 4.131 21 C -0.077 4.077 22 C -0.159 4.159 23 C 0.067 3.933 24 O -0.323 6.323 25 C 0.041 3.959 26 C -0.098 4.098 27 H 0.058 0.942 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.265 0.735 35 H 0.423 0.577 36 H 0.119 0.881 37 H 0.145 0.855 38 H 0.163 0.837 39 H 0.089 0.911 40 H 0.132 0.868 41 H 0.121 0.879 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.256 10.654 15.583 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.020 4.020 3 N -0.291 5.291 4 C 0.090 3.910 5 C -0.545 4.545 6 H 0.044 0.956 7 C -0.173 4.173 8 N -0.587 5.587 9 Si 0.760 3.240 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.163 1.163 13 C 0.289 3.711 14 O -0.437 6.437 15 C 0.271 3.729 16 O -0.347 6.347 17 N -0.291 5.291 18 C 0.015 3.985 19 C -0.134 4.134 20 C -0.149 4.149 21 C -0.095 4.095 22 C -0.161 4.161 23 C 0.020 3.980 24 O -0.238 6.238 25 C -0.033 4.033 26 C -0.135 4.135 27 H 0.077 0.923 28 H 0.114 0.886 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.260 0.740 36 H 0.137 0.863 37 H 0.163 0.837 38 H 0.181 0.819 39 H 0.107 0.893 40 H 0.150 0.850 41 H 0.139 0.861 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.338 10.552 15.225 19.578 hybrid contribution 0.220 -0.135 -0.518 0.579 sum -6.118 10.417 14.707 19.033 Atomic orbital electron populations 1.22046 0.93508 1.03786 1.01849 1.21754 0.96078 0.80489 1.03637 1.48008 1.59717 1.14790 1.06601 1.20001 0.96297 0.93523 0.81187 1.21176 0.94177 1.32646 1.06527 0.95612 1.25540 0.96885 0.96380 0.98492 1.70037 1.18799 1.46231 1.23642 0.85889 0.80811 0.79624 0.77645 1.20284 1.20723 1.16286 1.19846 0.79974 0.86682 0.84575 1.90643 1.55802 1.66503 1.30730 1.20442 0.80436 0.87791 0.84270 1.90881 1.49018 1.64557 1.30211 1.42975 1.63453 1.12814 1.09812 1.17259 1.00493 0.83591 0.97174 1.21173 0.96320 0.98405 0.97538 1.21219 1.01391 0.92385 0.99920 1.20665 0.96517 1.00996 0.91332 1.21092 1.02043 0.92960 0.99976 1.19370 0.95210 0.93376 0.90048 1.86850 1.57915 1.55475 1.23552 1.24215 1.03659 0.85426 0.89971 1.21894 1.03232 0.98021 0.90350 0.92317 0.88597 0.93291 0.89440 0.90123 0.93405 0.93106 0.92609 0.73956 0.86271 0.83674 0.81918 0.89309 0.85048 0.86114 0.87717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 10.24 71.98 0.74 -3.47 16 2 C 0.10 3.50 6.11 86.38 0.53 4.03 16 3 N -0.56 -23.97 2.47 -827.87 -2.05 -26.01 16 4 C 0.21 10.03 3.85 85.63 0.33 10.36 16 5 C -0.51 -28.96 8.34 25.60 0.21 -28.74 16 6 H 0.03 1.67 8.06 -2.91 -0.02 1.64 16 7 C 0.02 1.44 5.47 84.65 0.46 1.91 16 8 N -0.95 -59.24 13.96 21.45 0.30 -58.94 16 9 Si 0.94 44.38 27.47 68.60 1.88 46.26 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 13 C 0.51 22.04 7.67 87.23 0.67 22.70 16 14 O -0.56 -23.77 16.04 -3.28 -0.05 -23.82 16 15 C 0.49 21.50 7.57 87.23 0.66 22.16 16 16 O -0.48 -23.58 9.45 -3.36 -0.03 -23.62 16 17 N -0.64 -24.31 5.33 -304.24 -1.62 -25.93 16 18 C 0.11 3.89 6.35 38.34 0.24 4.14 16 19 C -0.11 -4.24 8.68 22.34 0.19 -4.04 16 20 C -0.13 -3.74 10.06 22.29 0.22 -3.52 16 21 C -0.08 -1.70 10.03 22.22 0.22 -1.48 16 22 C -0.16 -3.63 6.27 -19.54 -0.12 -3.75 16 23 C 0.07 1.98 6.95 22.79 0.16 2.13 16 24 O -0.32 -8.46 11.11 -95.76 -1.06 -9.52 16 25 C 0.04 0.60 8.01 72.56 0.58 1.18 16 26 C -0.10 -1.30 7.12 30.73 0.22 -1.08 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 2.94 8.11 -2.39 -0.02 2.92 16 31 H 0.08 2.74 7.36 -2.38 -0.02 2.72 16 32 H 0.05 2.12 7.08 -2.38 -0.02 2.10 16 33 H 0.05 2.52 5.27 -2.39 -0.01 2.51 16 34 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 35 H 0.42 14.55 8.30 -92.71 -0.77 13.78 16 36 H 0.12 5.39 6.09 -2.91 -0.02 5.37 16 37 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 38 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 40 H 0.13 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -75.46 350.98 2.92 -72.54 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.23 Total: 26.52 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: 5.32 Total: 22.52 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -3.37 Total: -110.88 kcal Atomic # 8 Polarization: -55.81 SS G_CDS: -1.15 Total: -56.96 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.26 kcal Total: -75.46 2.92 -72.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599972419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.210 kcal (2) G-P(sol) polarization free energy of solvation -75.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds