Wall clock time and date at job start Tue Mar 31 2020 13:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46499 * 109.47075 * 2 1 4 4 C 1.46498 * 120.00583 * 274.61175 * 3 2 1 5 5 C 1.50696 * 109.47105 * 270.59166 * 4 3 2 6 6 H 1.08006 * 119.99762 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00099 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99798 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99886 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47334 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47219 * 120.00580 * 9 7 5 12 12 H 1.48511 * 109.47030 * 240.00154 * 9 7 5 13 13 C 1.34783 * 120.00001 * 94.61153 * 3 2 1 14 14 O 1.21283 * 119.99457 * 7.27689 * 13 3 2 15 15 C 1.50695 * 120.00144 * 187.27786 * 13 3 2 16 16 C 1.52997 * 109.44498 * 285.99747 * 15 13 3 17 17 O 1.42929 * 109.44622 * 45.93856 * 15 13 3 18 18 C 1.35996 * 117.02842 * 165.51582 * 17 15 13 19 19 C 1.38446 * 120.42963 * 148.98656 * 18 17 15 20 20 C 1.38299 * 119.92107 * 179.02732 * 19 18 17 21 21 C 1.38288 * 120.23008 * 359.85105 * 20 19 18 22 22 C 1.38268 * 120.17021 * 0.33552 * 21 20 19 23 23 C 1.38514 * 119.88673 * 0.05198 * 22 21 20 24 24 N 1.40162 * 120.64459 * 179.82681 * 23 22 21 25 25 C 1.34952 * 119.20889 * 191.27661 * 24 23 22 26 26 O 1.21293 * 120.16329 * 185.75820 * 25 24 23 27 27 H 1.09001 * 109.46769 * 64.98730 * 1 2 3 28 28 H 1.08999 * 109.47107 * 184.98797 * 1 2 3 29 29 H 1.09001 * 109.46587 * 304.99220 * 1 2 3 30 30 H 1.08993 * 109.46746 * 240.00336 * 2 1 3 31 31 H 1.08997 * 109.47152 * 120.00118 * 2 1 3 32 32 H 1.09002 * 109.46629 * 30.59029 * 4 3 2 33 33 H 1.08999 * 109.47558 * 150.58548 * 4 3 2 34 34 H 0.96999 * 119.99885 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46834 * 188.46263 * 16 15 13 36 36 H 1.09000 * 109.47141 * 308.46339 * 16 15 13 37 37 H 1.08995 * 109.46647 * 68.46642 * 16 15 13 38 38 H 1.07993 * 120.04167 * 358.99618 * 19 18 17 39 39 H 1.07993 * 119.88719 * 179.83015 * 20 19 18 40 40 H 1.07998 * 119.91409 * 180.31273 * 21 20 19 41 41 H 1.08000 * 120.05368 * 179.77701 * 22 21 20 42 42 H 0.96996 * 120.39174 * 11.27699 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1664 2.1059 -1.2645 5 6 3.5475 1.8706 -1.8197 6 1 4.2454 1.2442 -1.2838 7 6 3.9202 2.4550 -3.0116 8 7 3.0703 3.2173 -3.6642 9 14 5.6320 2.1627 -3.7000 10 1 6.3895 1.2741 -2.7825 11 1 5.5257 1.5216 -5.0352 12 1 6.3419 3.4607 -3.8292 13 6 2.3315 1.9853 1.1635 14 8 2.3361 1.3481 2.1954 15 6 2.6758 3.4523 1.1820 16 6 4.0748 3.6545 0.5967 17 8 1.7232 4.1746 0.3987 18 6 1.6980 5.5261 0.5479 19 6 1.3436 6.3422 -0.5128 20 6 1.3020 7.7142 -0.3438 21 6 1.6104 8.2743 0.8824 22 6 1.9690 7.4658 1.9452 23 6 2.0204 6.0914 1.7803 24 7 2.3854 5.2572 2.8458 25 6 2.6493 3.9562 2.6031 26 8 2.8645 3.1960 3.5234 27 1 -0.3633 0.4345 -0.9313 28 1 -0.3633 -1.0238 0.0894 29 1 -0.3632 0.5894 0.8419 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.4227 1.7489 -1.9770 33 1 2.0212 3.1722 -1.0914 34 1 3.3326 3.6287 -4.5025 35 1 4.3852 4.6887 0.7462 36 1 4.7778 2.9883 1.0968 37 1 4.0581 3.4308 -0.4699 38 1 1.1003 5.9080 -1.4712 39 1 1.0281 8.3504 -1.1723 40 1 1.5714 9.3459 1.0101 41 1 2.2130 7.9054 2.9010 42 1 2.4475 5.6108 3.7469 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601009183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:55 Heat of formation + Delta-G solvation = -60.286826 kcal Electronic energy + Delta-G solvation = -28495.315226 eV Core-core repulsion = 24634.522267 eV Total energy + Delta-G solvation = -3860.792959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.59857 -39.26577 -38.37396 -37.22069 -35.25455 -34.86206 -32.95758 -31.96101 -30.19650 -29.99197 -28.80452 -27.21641 -24.85820 -23.88942 -23.07144 -22.78919 -22.43274 -19.93177 -18.92667 -18.27384 -17.56778 -16.62922 -16.26219 -16.01142 -15.76589 -15.51445 -15.05769 -14.58563 -14.48040 -14.24297 -13.96830 -13.84308 -13.71767 -13.16205 -12.80719 -12.72070 -12.38262 -12.14912 -11.98879 -11.88632 -11.75623 -11.56550 -11.33014 -11.18806 -11.04722 -10.93116 -10.65115 -10.55121 -10.47694 -10.13067 -9.84598 -9.58145 -8.98758 -8.61012 -8.50859 -7.76126 -7.71847 -6.23102 -4.28077 1.21514 1.38391 2.47720 2.85321 2.98350 3.17491 3.27202 3.31137 3.62035 3.77473 3.96101 4.25369 4.27688 4.71032 5.01643 5.01814 5.09139 5.21550 5.27222 5.45612 5.50799 5.64296 5.81607 5.89848 5.91192 5.97821 6.09233 6.14620 6.23821 6.27695 6.41705 6.53898 6.65557 6.70023 6.79874 6.81440 6.93778 6.94997 7.34833 7.53774 7.60256 7.72523 8.04018 8.04427 8.24340 8.72639 8.89076 9.35572 10.82323 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010606 B = 0.006590 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.491815 B = 4247.968125 C = 5601.098408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.113 3.887 3 N -0.580 5.580 4 C 0.217 3.783 5 C -0.538 4.538 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.889 3.111 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.281 1.281 13 C 0.537 3.463 14 O -0.527 6.527 15 C 0.102 3.898 16 C -0.189 4.189 17 O -0.272 6.272 18 C 0.085 3.915 19 C -0.098 4.098 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.133 4.133 23 C 0.092 3.908 24 N -0.664 5.664 25 C 0.501 3.499 26 O -0.468 6.468 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.265 0.735 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.131 0.869 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.611 8.799 5.236 10.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.010 4.010 3 N -0.311 5.311 4 C 0.098 3.902 5 C -0.576 4.576 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.716 3.284 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.207 1.207 13 C 0.321 3.679 14 O -0.404 6.404 15 C 0.057 3.943 16 C -0.246 4.246 17 O -0.187 6.187 18 C 0.039 3.961 19 C -0.117 4.117 20 C -0.133 4.133 21 C -0.138 4.138 22 C -0.153 4.153 23 C -0.004 4.004 24 N -0.312 5.312 25 C 0.286 3.714 26 O -0.338 6.338 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.617 7.823 5.863 10.424 hybrid contribution 1.148 0.296 -0.055 1.187 sum -2.469 8.119 5.807 10.283 Atomic orbital electron populations 1.22113 0.96627 1.01249 1.02088 1.21311 0.93506 0.83343 1.02875 1.48106 1.61654 1.13589 1.07750 1.19997 0.96907 0.94371 0.78946 1.21549 0.98851 1.30739 1.06477 0.91945 1.24913 0.97455 0.94885 0.96331 1.69931 1.34805 1.31117 1.16044 0.86572 0.84287 0.78296 0.79209 1.19567 1.20755 1.20730 1.19134 0.78092 0.86336 0.84379 1.90756 1.52616 1.64432 1.32629 1.21994 0.93458 0.91995 0.86831 1.22853 0.91151 1.01941 1.08655 1.86571 1.55127 1.14785 1.62178 1.18792 1.01494 0.83872 0.91988 1.20719 1.01001 0.92377 0.97631 1.20976 1.00805 0.93943 0.97613 1.20875 1.00734 0.99512 0.92643 1.20507 1.04366 0.90214 1.00256 1.18101 1.03384 0.91273 0.87593 1.43719 1.68167 1.09188 1.10169 1.20973 0.76849 0.81540 0.92060 1.90844 1.44246 1.53625 1.45061 0.92316 0.92276 0.93015 0.90201 0.90688 0.94565 0.90835 0.92522 0.92320 0.90767 0.83712 0.83629 0.85157 0.85573 0.85504 0.75009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 10.24 37.16 0.38 -2.27 16 2 C 0.11 2.12 6.23 -4.04 -0.03 2.10 16 3 N -0.58 -12.55 2.46 -175.06 -0.43 -12.98 16 4 C 0.22 5.02 4.60 -5.20 -0.02 4.99 16 5 C -0.54 -13.23 6.62 -34.44 -0.23 -13.46 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.07 1.70 5.45 -17.82 -0.10 1.60 16 8 N -0.88 -22.69 13.29 55.43 0.74 -21.95 16 9 Si 0.89 19.64 29.54 -169.99 -5.02 14.61 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.54 12.14 6.63 -10.99 -0.07 12.07 16 14 O -0.53 -13.04 14.01 -18.24 -0.26 -13.30 16 15 C 0.10 2.08 0.66 -92.88 -0.06 2.02 16 16 C -0.19 -3.74 8.14 37.16 0.30 -3.44 16 17 O -0.27 -5.37 6.78 -19.73 -0.13 -5.50 16 18 C 0.09 1.44 6.05 -39.08 -0.24 1.20 16 19 C -0.10 -1.46 9.99 -39.48 -0.39 -1.85 16 20 C -0.11 -1.33 10.04 -39.54 -0.40 -1.73 16 21 C -0.12 -1.25 10.04 -39.55 -0.40 -1.64 16 22 C -0.13 -1.52 9.93 -39.47 -0.39 -1.91 16 23 C 0.09 1.37 6.57 -83.52 -0.55 0.82 16 24 N -0.66 -10.22 5.46 -9.70 -0.05 -10.28 16 25 C 0.50 9.82 6.87 -10.86 -0.07 9.74 16 26 O -0.47 -10.51 15.50 -18.24 -0.28 -10.80 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 31 H 0.07 1.43 7.21 -51.93 -0.37 1.05 16 32 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 33 H 0.07 1.75 4.25 -51.93 -0.22 1.53 16 34 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 35 H 0.06 1.04 8.03 -51.93 -0.42 0.62 16 36 H 0.07 1.45 8.12 -51.93 -0.42 1.03 16 37 H 0.15 3.20 4.21 -51.93 -0.22 2.98 16 38 H 0.15 2.23 8.06 -52.49 -0.42 1.80 16 39 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 40 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.41 5.09 8.87 -40.82 -0.36 4.73 16 LS Contribution 346.07 15.07 5.22 5.22 Total: -1.00 -30.20 346.07 -7.85 -38.05 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.36 Total: 8.69 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -2.27 Total: 8.24 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.25 Total: -45.21 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.67 Total: -29.60 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.20 -7.85 -38.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601009183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.240 kcal (2) G-P(sol) polarization free energy of solvation -30.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds