Wall clock time and date at job start Tue Mar 31 2020 13:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46499 * 109.47075 * 2 1 4 4 C 1.46498 * 120.00583 * 274.61175 * 3 2 1 5 5 C 1.50696 * 109.47105 * 270.59166 * 4 3 2 6 6 H 1.08006 * 119.99762 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00099 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99798 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99886 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47334 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47219 * 120.00580 * 9 7 5 12 12 H 1.48511 * 109.47030 * 240.00154 * 9 7 5 13 13 C 1.34783 * 120.00001 * 94.61153 * 3 2 1 14 14 O 1.21283 * 119.99457 * 7.27689 * 13 3 2 15 15 C 1.50695 * 120.00144 * 187.27786 * 13 3 2 16 16 C 1.52997 * 109.44498 * 285.99747 * 15 13 3 17 17 O 1.42929 * 109.44622 * 45.93856 * 15 13 3 18 18 C 1.35996 * 117.02842 * 165.51582 * 17 15 13 19 19 C 1.38446 * 120.42963 * 148.98656 * 18 17 15 20 20 C 1.38299 * 119.92107 * 179.02732 * 19 18 17 21 21 C 1.38288 * 120.23008 * 359.85105 * 20 19 18 22 22 C 1.38268 * 120.17021 * 0.33552 * 21 20 19 23 23 C 1.38514 * 119.88673 * 0.05198 * 22 21 20 24 24 N 1.40162 * 120.64459 * 179.82681 * 23 22 21 25 25 C 1.34952 * 119.20889 * 191.27661 * 24 23 22 26 26 O 1.21293 * 120.16329 * 185.75820 * 25 24 23 27 27 H 1.09001 * 109.46769 * 64.98730 * 1 2 3 28 28 H 1.08999 * 109.47107 * 184.98797 * 1 2 3 29 29 H 1.09001 * 109.46587 * 304.99220 * 1 2 3 30 30 H 1.08993 * 109.46746 * 240.00336 * 2 1 3 31 31 H 1.08997 * 109.47152 * 120.00118 * 2 1 3 32 32 H 1.09002 * 109.46629 * 30.59029 * 4 3 2 33 33 H 1.08999 * 109.47558 * 150.58548 * 4 3 2 34 34 H 0.96999 * 119.99885 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46834 * 188.46263 * 16 15 13 36 36 H 1.09000 * 109.47141 * 308.46339 * 16 15 13 37 37 H 1.08995 * 109.46647 * 68.46642 * 16 15 13 38 38 H 1.07993 * 120.04167 * 358.99618 * 19 18 17 39 39 H 1.07993 * 119.88719 * 179.83015 * 20 19 18 40 40 H 1.07998 * 119.91409 * 180.31273 * 21 20 19 41 41 H 1.08000 * 120.05368 * 179.77701 * 22 21 20 42 42 H 0.96996 * 120.39174 * 11.27699 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1664 2.1059 -1.2645 5 6 3.5475 1.8706 -1.8197 6 1 4.2454 1.2442 -1.2838 7 6 3.9202 2.4550 -3.0116 8 7 3.0703 3.2173 -3.6642 9 14 5.6320 2.1627 -3.7000 10 1 6.3895 1.2741 -2.7825 11 1 5.5257 1.5216 -5.0352 12 1 6.3419 3.4607 -3.8292 13 6 2.3315 1.9853 1.1635 14 8 2.3361 1.3481 2.1954 15 6 2.6758 3.4523 1.1820 16 6 4.0748 3.6545 0.5967 17 8 1.7232 4.1746 0.3987 18 6 1.6980 5.5261 0.5479 19 6 1.3436 6.3422 -0.5128 20 6 1.3020 7.7142 -0.3438 21 6 1.6104 8.2743 0.8824 22 6 1.9690 7.4658 1.9452 23 6 2.0204 6.0914 1.7803 24 7 2.3854 5.2572 2.8458 25 6 2.6493 3.9562 2.6031 26 8 2.8645 3.1960 3.5234 27 1 -0.3633 0.4345 -0.9313 28 1 -0.3633 -1.0238 0.0894 29 1 -0.3632 0.5894 0.8419 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.4227 1.7489 -1.9770 33 1 2.0212 3.1722 -1.0914 34 1 3.3326 3.6287 -4.5025 35 1 4.3852 4.6887 0.7462 36 1 4.7778 2.9883 1.0968 37 1 4.0581 3.4308 -0.4699 38 1 1.1003 5.9080 -1.4712 39 1 1.0281 8.3504 -1.1723 40 1 1.5714 9.3459 1.0101 41 1 2.2130 7.9054 2.9010 42 1 2.4475 5.6108 3.7469 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601009183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:54 Heat of formation + Delta-G solvation = -78.157646 kcal Electronic energy + Delta-G solvation = -28496.090163 eV Core-core repulsion = 24634.522267 eV Total energy + Delta-G solvation = -3861.567895 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.00676 -40.76564 -39.86362 -38.52895 -37.00207 -36.16650 -34.78982 -33.51052 -31.57250 -31.25898 -29.97679 -29.08032 -26.41660 -25.26899 -24.93835 -24.03353 -23.65309 -21.37276 -20.26436 -19.74316 -18.97155 -18.47732 -17.79133 -17.43765 -17.36747 -16.89085 -16.45545 -16.27725 -15.94316 -15.66003 -15.41387 -15.26356 -14.80812 -14.62748 -14.39654 -14.18008 -14.02309 -13.73135 -13.49950 -13.48884 -13.11463 -12.96070 -12.82332 -12.68386 -12.62289 -12.42783 -12.16493 -12.07504 -11.85518 -11.81443 -11.65023 -11.19924 -10.68783 -10.49468 -9.60853 -9.50952 -8.93177 -8.15913 -6.26480 0.06254 0.34741 1.05353 1.36113 1.40895 1.46181 1.52502 1.55317 2.05973 2.39099 2.44204 2.78166 2.86793 3.13796 3.37116 3.63488 3.66345 4.11073 4.15051 4.32147 4.35575 4.39821 4.42856 4.50229 4.51266 4.60407 4.79395 4.86117 4.94286 5.05189 5.08678 5.20540 5.25019 5.26630 5.47700 5.54949 5.58853 5.69011 5.75181 5.78311 5.83253 6.10972 6.28914 6.44236 6.68885 6.82306 7.10289 7.39966 8.89371 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010606 B = 0.006590 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.491815 B = 4247.968125 C = 5601.098408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.104 3.896 3 N -0.582 5.582 4 C 0.231 3.769 5 C -0.541 4.541 6 H 0.050 0.950 7 C 0.033 3.967 8 N -0.905 5.905 9 Si 0.944 3.056 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.275 1.275 13 C 0.528 3.472 14 O -0.555 6.555 15 C 0.101 3.899 16 C -0.178 4.178 17 O -0.292 6.292 18 C 0.046 3.954 19 C -0.116 4.116 20 C -0.104 4.104 21 C -0.103 4.103 22 C -0.117 4.117 23 C 0.072 3.928 24 N -0.645 5.645 25 C 0.501 3.499 26 O -0.508 6.508 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.037 0.963 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.019 0.981 33 H 0.070 0.930 34 H 0.268 0.732 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.160 0.840 40 H 0.171 0.829 41 H 0.164 0.836 42 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.549 11.654 5.358 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 N -0.311 5.311 4 C 0.112 3.888 5 C -0.579 4.579 6 H 0.068 0.932 7 C -0.169 4.169 8 N -0.543 5.543 9 Si 0.770 3.230 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.201 1.201 13 C 0.312 3.688 14 O -0.435 6.435 15 C 0.056 3.944 16 C -0.236 4.236 17 O -0.207 6.207 18 C 0.000 4.000 19 C -0.135 4.135 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.137 4.137 23 C -0.023 4.023 24 N -0.294 5.294 25 C 0.285 3.715 26 O -0.381 6.381 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.038 0.962 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.178 0.822 40 H 0.189 0.811 41 H 0.181 0.819 42 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -3.577 10.727 5.965 12.784 hybrid contribution 1.048 -0.421 -0.140 1.138 sum -2.529 10.306 5.825 12.105 Atomic orbital electron populations 1.22016 0.94440 1.03103 1.01334 1.21533 0.95343 0.82099 1.02858 1.48195 1.61324 1.14484 1.07143 1.19716 0.95807 0.94304 0.79013 1.21562 0.99119 1.30578 1.06652 0.93188 1.25471 1.00279 0.94650 0.96493 1.70004 1.36163 1.31708 1.16408 0.85721 0.80725 0.78212 0.78364 1.19909 1.20455 1.20069 1.19563 0.77654 0.87506 0.84052 1.90720 1.53991 1.65465 1.33338 1.21782 0.93613 0.90981 0.88013 1.22674 0.91139 1.02875 1.06872 1.86478 1.55077 1.16797 1.62398 1.19177 1.04243 0.82688 0.93859 1.20803 1.02155 0.93910 0.96653 1.21375 0.99005 0.92507 0.99360 1.21414 0.97881 1.01570 0.91253 1.20989 1.02035 0.88460 1.02200 1.18300 1.04883 0.92510 0.86584 1.43443 1.66766 1.07808 1.11339 1.20807 0.76787 0.82709 0.91165 1.90816 1.46611 1.54992 1.45682 0.92491 0.88961 0.94345 0.89715 0.91081 0.96243 0.91295 0.92247 0.90481 0.91295 0.85948 0.85388 0.82217 0.81142 0.81854 0.73127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.96 10.24 71.99 0.74 -4.22 16 2 C 0.10 4.03 6.23 86.38 0.54 4.57 16 3 N -0.58 -26.27 2.46 -826.16 -2.03 -28.30 16 4 C 0.23 11.16 4.60 85.63 0.39 11.55 16 5 C -0.54 -27.38 6.62 25.60 0.17 -27.21 16 6 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 7 C 0.03 1.66 5.45 84.66 0.46 2.12 16 8 N -0.90 -47.14 13.29 21.45 0.28 -46.85 16 9 Si 0.94 40.45 29.54 68.60 2.03 42.48 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 12 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 13 C 0.53 24.96 6.63 87.65 0.58 25.54 16 14 O -0.56 -28.74 14.01 19.71 0.28 -28.47 16 15 C 0.10 4.28 0.66 -12.26 -0.01 4.27 16 16 C -0.18 -7.28 8.14 71.98 0.59 -6.69 16 17 O -0.29 -11.98 6.78 -93.51 -0.63 -12.62 16 18 C 0.05 1.55 6.05 22.59 0.14 1.68 16 19 C -0.12 -3.38 9.99 22.33 0.22 -3.16 16 20 C -0.10 -2.06 10.04 22.30 0.22 -1.84 16 21 C -0.10 -1.62 10.04 22.29 0.22 -1.39 16 22 C -0.12 -2.17 9.93 22.34 0.22 -1.94 16 23 C 0.07 2.00 6.57 38.15 0.25 2.25 16 24 N -0.64 -19.21 5.46 -302.88 -1.65 -20.86 16 25 C 0.50 19.98 6.87 87.66 0.60 20.58 16 26 O -0.51 -23.48 15.50 19.68 0.31 -23.18 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 3.16 8.11 -2.39 -0.02 3.14 16 31 H 0.07 2.81 7.21 -2.39 -0.02 2.79 16 32 H 0.02 0.99 8.08 -2.39 -0.02 0.97 16 33 H 0.07 3.45 4.25 -2.40 -0.01 3.44 16 34 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 35 H 0.08 2.76 8.03 -2.39 -0.02 2.74 16 36 H 0.07 2.80 8.12 -2.39 -0.02 2.78 16 37 H 0.12 5.61 4.21 -2.39 -0.01 5.60 16 38 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 39 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 40 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 41 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.43 9.81 8.87 -92.71 -0.82 8.99 16 Total: -1.00 -68.35 346.07 4.15 -64.20 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.24 Total: 27.48 kcal Atomic # 6 Polarization: 20.78 SS G_CDS: 5.34 Total: 26.12 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -3.40 Total: -96.02 kcal Atomic # 8 Polarization: -64.21 SS G_CDS: -0.05 Total: -64.26 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -68.35 4.15 -64.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601009183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.958 kcal (2) G-P(sol) polarization free energy of solvation -68.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds