Wall clock time and date at job start Tue Mar 31 2020 13:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47281 * 2 1 4 4 C 1.46498 * 119.99894 * 73.16009 * 3 2 1 5 5 C 1.50698 * 109.47160 * 269.99937 * 4 3 2 6 6 H 1.08006 * 120.00079 * 359.73002 * 5 4 3 7 7 C 1.37876 * 120.00070 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99927 * 359.73150 * 7 5 4 9 9 Si 1.86803 * 120.00047 * 179.72702 * 7 5 4 10 10 H 1.48499 * 109.47033 * 60.00254 * 9 7 5 11 11 H 1.48498 * 109.47037 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47108 * 299.99892 * 9 7 5 13 13 C 1.34780 * 119.99610 * 253.16366 * 3 2 1 14 14 O 1.21281 * 119.99631 * 172.90796 * 13 3 2 15 15 C 1.50693 * 120.00010 * 352.90959 * 13 3 2 16 16 C 1.53005 * 109.43944 * 77.27315 * 15 13 3 17 17 O 1.42924 * 109.44143 * 317.35762 * 15 13 3 18 18 C 1.36009 * 116.99628 * 285.32989 * 17 15 13 19 19 C 1.38453 * 120.44002 * 148.03868 * 18 17 15 20 20 C 1.38299 * 119.89776 * 179.31841 * 19 18 17 21 21 C 1.38275 * 120.24112 * 359.96021 * 20 19 18 22 22 C 1.38263 * 120.18941 * 0.30637 * 21 20 19 23 23 C 1.38572 * 119.84574 * 0.02562 * 22 21 20 24 24 N 1.40158 * 120.54196 * 178.46360 * 23 22 21 25 25 C 1.34951 * 119.20343 * 191.79516 * 24 23 22 26 26 O 1.21297 * 120.13276 * 186.02437 * 25 24 23 27 27 H 1.09007 * 109.47201 * 172.58691 * 1 2 3 28 28 H 1.09002 * 109.47256 * 292.58781 * 1 2 3 29 29 H 1.09003 * 109.46966 * 52.59064 * 1 2 3 30 30 H 1.08995 * 109.47001 * 239.99473 * 2 1 3 31 31 H 1.08999 * 109.47007 * 119.99776 * 2 1 3 32 32 H 1.09003 * 109.46708 * 150.00322 * 4 3 2 33 33 H 1.08996 * 109.47622 * 30.00003 * 4 3 2 34 34 H 0.97006 * 119.99913 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.46769 * 52.30994 * 16 15 13 36 36 H 1.08999 * 109.47463 * 172.30813 * 16 15 13 37 37 H 1.08997 * 109.46903 * 292.31367 * 16 15 13 38 38 H 1.08003 * 120.05131 * 359.30118 * 19 18 17 39 39 H 1.08004 * 119.87463 * 179.97438 * 20 19 18 40 40 H 1.08003 * 119.90616 * 180.32079 * 21 20 19 41 41 H 1.08002 * 120.08158 * 180.02562 * 22 21 20 42 42 H 0.97001 * 120.39443 * 11.81982 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9160 2.1943 1.2143 5 6 0.5988 2.9265 1.2191 6 1 -0.0910 2.8023 0.3974 7 6 0.2770 3.7596 2.2695 8 7 1.1173 3.9113 3.2697 9 14 -1.3524 4.6731 2.2717 10 1 -2.4686 3.6943 2.2352 11 1 -1.4562 5.4973 3.5026 12 1 -1.4275 5.5543 1.0788 13 6 2.5617 1.9038 -1.1172 14 8 2.8478 3.0817 -1.1587 15 6 2.8138 1.0246 -2.3149 16 6 1.4949 0.7735 -3.0488 17 8 3.3623 -0.2224 -1.8825 18 6 4.6639 -0.2208 -1.4882 19 6 5.0980 -1.0858 -0.4982 20 6 6.4271 -1.0845 -0.1157 21 6 7.3245 -0.2228 -0.7192 22 6 6.8973 0.6477 -1.7047 23 6 5.5655 0.6560 -2.0875 24 7 5.1102 1.5545 -3.0622 25 6 3.7822 1.7102 -3.2451 26 8 3.3694 2.3985 -4.1545 27 1 -0.3634 -1.0191 -0.1326 28 1 -0.3634 0.3947 0.9488 29 1 -0.3633 0.6243 -0.8163 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.7328 2.9158 1.2384 33 1 1.9758 1.5484 2.0903 34 1 0.8907 4.4972 4.0089 35 1 1.0081 1.7262 -3.2573 36 1 1.6939 0.2544 -3.9863 37 1 0.8432 0.1612 -2.4256 38 1 4.3998 -1.7604 -0.0251 39 1 6.7652 -1.7592 0.6569 40 1 8.3623 -0.2300 -0.4200 41 1 7.5998 1.3197 -2.1752 42 1 5.7421 2.0580 -3.5990 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601009184.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:59 Heat of formation + Delta-G solvation = -58.956274 kcal Electronic energy + Delta-G solvation = -28365.644675 eV Core-core repulsion = 24504.909414 eV Total energy + Delta-G solvation = -3860.735261 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.94899 -39.24719 -38.75063 -37.40102 -35.48477 -35.16466 -32.88871 -32.12337 -30.36368 -29.98944 -29.03387 -27.43027 -25.32672 -23.72527 -23.11754 -22.82834 -22.61337 -20.39762 -19.29797 -18.47152 -17.81877 -17.01625 -16.60035 -16.15032 -15.94853 -15.32259 -15.20244 -14.84688 -14.46829 -14.45292 -14.07617 -13.94599 -13.77773 -13.32357 -13.22829 -12.86153 -12.44576 -12.26012 -12.18769 -12.07703 -11.92240 -11.82660 -11.45522 -11.29419 -11.16024 -10.92895 -10.87524 -10.63328 -10.42785 -10.14994 -9.99307 -9.62003 -9.24150 -8.68952 -8.43926 -7.98161 -7.77340 -6.05449 -4.09176 0.99036 1.13869 2.19786 2.70265 2.77888 3.27167 3.31908 3.36376 3.40569 3.57843 3.73500 4.01671 4.43192 4.46819 4.72169 4.72415 4.83427 5.09599 5.15309 5.26293 5.29271 5.51284 5.57216 5.61128 5.67504 5.79927 5.85008 5.94244 6.01759 6.06805 6.24837 6.31883 6.42110 6.43923 6.52480 6.72907 6.88586 6.94959 7.18983 7.34540 7.44648 7.76761 7.89828 8.19879 8.24015 8.72252 8.95374 9.54989 11.02942 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015371 B = 0.004830 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.123153 B = 5795.214726 C = 6232.598134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.089 3.911 3 N -0.574 5.574 4 C 0.248 3.752 5 C -0.521 4.521 6 H 0.060 0.940 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.495 3.505 14 O -0.520 6.520 15 C 0.087 3.913 16 C -0.133 4.133 17 O -0.286 6.286 18 C 0.075 3.925 19 C -0.100 4.100 20 C -0.114 4.114 21 C -0.110 4.110 22 C -0.127 4.127 23 C 0.101 3.899 24 N -0.658 5.658 25 C 0.526 3.474 26 O -0.492 6.492 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.578 -14.211 -8.713 19.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.034 4.034 3 N -0.305 5.305 4 C 0.129 3.871 5 C -0.560 4.560 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.277 3.723 14 O -0.396 6.396 15 C 0.042 3.958 16 C -0.191 4.191 17 O -0.202 6.202 18 C 0.028 3.972 19 C -0.119 4.119 20 C -0.133 4.133 21 C -0.129 4.129 22 C -0.148 4.148 23 C 0.005 3.995 24 N -0.304 5.304 25 C 0.311 3.689 26 O -0.364 6.364 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 9.193 -13.295 -8.983 18.492 hybrid contribution -0.494 1.043 -0.068 1.156 sum 8.699 -12.252 -9.052 17.542 Atomic orbital electron populations 1.22214 0.95814 1.00405 1.04091 1.21979 0.94973 0.83209 1.03217 1.48173 1.56529 1.13528 1.12224 1.19336 0.98098 0.90190 0.79443 1.21362 1.02421 1.26514 1.05675 0.92219 1.24924 0.97307 0.96408 0.95430 1.69919 1.35831 1.38253 1.09479 0.86580 0.83676 0.79903 0.77419 1.20179 1.21217 1.20193 1.20023 0.80527 0.87899 0.83824 1.90766 1.52585 1.15422 1.80869 1.22529 0.95342 0.83518 0.94377 1.21920 0.91861 1.04993 1.00287 1.86258 1.22991 1.30469 1.80449 1.18622 0.82689 0.98721 0.97123 1.20550 0.96811 1.00102 0.94421 1.20978 0.92241 0.99760 1.00306 1.20946 1.00114 0.95720 0.96081 1.20616 0.92981 1.01471 0.99745 1.18086 0.94314 0.93698 0.93362 1.43588 1.07646 1.42038 1.37101 1.20523 0.82706 0.80711 0.84916 1.90755 1.77238 1.37472 1.30971 0.92877 0.90586 0.92727 0.88570 0.91496 0.94278 0.94599 0.92683 0.88622 0.90372 0.89018 0.84219 0.84871 0.85151 0.85052 0.74516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 8.79 37.16 0.33 -2.31 16 2 C 0.09 1.46 5.34 -4.04 -0.02 1.44 16 3 N -0.57 -12.16 2.54 -175.07 -0.44 -12.61 16 4 C 0.25 6.41 5.07 -5.20 -0.03 6.39 16 5 C -0.52 -14.50 8.23 -34.44 -0.28 -14.79 16 6 H 0.06 1.66 7.60 -52.48 -0.40 1.26 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 9 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.49 10.77 6.25 -10.99 -0.07 10.70 16 14 O -0.52 -13.72 15.80 5.56 0.09 -13.64 16 15 C 0.09 1.51 0.67 -92.89 -0.06 1.45 16 16 C -0.13 -1.96 8.04 37.16 0.30 -1.67 16 17 O -0.29 -4.28 6.74 -19.77 -0.13 -4.41 16 18 C 0.07 1.06 6.11 -39.10 -0.24 0.82 16 19 C -0.10 -1.16 9.99 -39.48 -0.39 -1.56 16 20 C -0.11 -1.11 10.04 -39.55 -0.40 -1.50 16 21 C -0.11 -1.05 10.04 -39.56 -0.40 -1.44 16 22 C -0.13 -1.39 9.94 -39.45 -0.39 -1.79 16 23 C 0.10 1.40 6.57 -83.53 -0.55 0.85 16 24 N -0.66 -9.69 5.46 -9.71 -0.05 -9.75 16 25 C 0.53 9.39 6.21 -10.87 -0.07 9.32 16 26 O -0.49 -9.76 17.13 5.54 0.09 -9.67 16 27 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 28 H 0.08 1.40 7.51 -51.93 -0.39 1.01 16 29 H 0.05 0.89 7.28 -51.93 -0.38 0.51 16 30 H 0.10 1.39 3.57 -51.99 -0.19 1.20 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.04 1.15 7.53 -51.93 -0.39 0.76 16 33 H 0.04 0.93 8.07 -51.93 -0.42 0.52 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.10 1.53 8.08 -51.93 -0.42 1.11 16 36 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 37 H 0.09 1.20 5.02 -51.93 -0.26 0.94 16 38 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 40 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 41 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.42 5.01 8.87 -40.82 -0.36 4.65 16 LS Contribution 347.02 15.07 5.23 5.23 Total: -1.00 -34.99 347.02 -7.17 -42.16 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.30 Total: 3.96 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -2.37 Total: 7.56 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.24 Total: -48.05 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: 0.05 Total: -27.71 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.99 -7.17 -42.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601009184.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.796 kcal (2) G-P(sol) polarization free energy of solvation -34.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds