Wall clock time and date at job start Tue Mar 31 2020 13:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47281 * 2 1 4 4 C 1.46498 * 119.99894 * 73.16009 * 3 2 1 5 5 C 1.50698 * 109.47160 * 269.99937 * 4 3 2 6 6 H 1.08006 * 120.00079 * 359.73002 * 5 4 3 7 7 C 1.37876 * 120.00070 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99927 * 359.73150 * 7 5 4 9 9 Si 1.86803 * 120.00047 * 179.72702 * 7 5 4 10 10 H 1.48499 * 109.47033 * 60.00254 * 9 7 5 11 11 H 1.48498 * 109.47037 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47108 * 299.99892 * 9 7 5 13 13 C 1.34780 * 119.99610 * 253.16366 * 3 2 1 14 14 O 1.21281 * 119.99631 * 172.90796 * 13 3 2 15 15 C 1.50693 * 120.00010 * 352.90959 * 13 3 2 16 16 C 1.53005 * 109.43944 * 77.27315 * 15 13 3 17 17 O 1.42924 * 109.44143 * 317.35762 * 15 13 3 18 18 C 1.36009 * 116.99628 * 285.32989 * 17 15 13 19 19 C 1.38453 * 120.44002 * 148.03868 * 18 17 15 20 20 C 1.38299 * 119.89776 * 179.31841 * 19 18 17 21 21 C 1.38275 * 120.24112 * 359.96021 * 20 19 18 22 22 C 1.38263 * 120.18941 * 0.30637 * 21 20 19 23 23 C 1.38572 * 119.84574 * 0.02562 * 22 21 20 24 24 N 1.40158 * 120.54196 * 178.46360 * 23 22 21 25 25 C 1.34951 * 119.20343 * 191.79516 * 24 23 22 26 26 O 1.21297 * 120.13276 * 186.02437 * 25 24 23 27 27 H 1.09007 * 109.47201 * 172.58691 * 1 2 3 28 28 H 1.09002 * 109.47256 * 292.58781 * 1 2 3 29 29 H 1.09003 * 109.46966 * 52.59064 * 1 2 3 30 30 H 1.08995 * 109.47001 * 239.99473 * 2 1 3 31 31 H 1.08999 * 109.47007 * 119.99776 * 2 1 3 32 32 H 1.09003 * 109.46708 * 150.00322 * 4 3 2 33 33 H 1.08996 * 109.47622 * 30.00003 * 4 3 2 34 34 H 0.97006 * 119.99913 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.46769 * 52.30994 * 16 15 13 36 36 H 1.08999 * 109.47463 * 172.30813 * 16 15 13 37 37 H 1.08997 * 109.46903 * 292.31367 * 16 15 13 38 38 H 1.08003 * 120.05131 * 359.30118 * 19 18 17 39 39 H 1.08004 * 119.87463 * 179.97438 * 20 19 18 40 40 H 1.08003 * 119.90616 * 180.32079 * 21 20 19 41 41 H 1.08002 * 120.08158 * 180.02562 * 22 21 20 42 42 H 0.97001 * 120.39443 * 11.81982 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9160 2.1943 1.2143 5 6 0.5988 2.9265 1.2191 6 1 -0.0910 2.8023 0.3974 7 6 0.2770 3.7596 2.2695 8 7 1.1173 3.9113 3.2697 9 14 -1.3524 4.6731 2.2717 10 1 -2.4686 3.6943 2.2352 11 1 -1.4562 5.4973 3.5026 12 1 -1.4275 5.5543 1.0788 13 6 2.5617 1.9038 -1.1172 14 8 2.8478 3.0817 -1.1587 15 6 2.8138 1.0246 -2.3149 16 6 1.4949 0.7735 -3.0488 17 8 3.3623 -0.2224 -1.8825 18 6 4.6639 -0.2208 -1.4882 19 6 5.0980 -1.0858 -0.4982 20 6 6.4271 -1.0845 -0.1157 21 6 7.3245 -0.2228 -0.7192 22 6 6.8973 0.6477 -1.7047 23 6 5.5655 0.6560 -2.0875 24 7 5.1102 1.5545 -3.0622 25 6 3.7822 1.7102 -3.2451 26 8 3.3694 2.3985 -4.1545 27 1 -0.3634 -1.0191 -0.1326 28 1 -0.3634 0.3947 0.9488 29 1 -0.3633 0.6243 -0.8163 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.7328 2.9158 1.2384 33 1 1.9758 1.5484 2.0903 34 1 0.8907 4.4972 4.0089 35 1 1.0081 1.7262 -3.2573 36 1 1.6939 0.2544 -3.9863 37 1 0.8432 0.1612 -2.4256 38 1 4.3998 -1.7604 -0.0251 39 1 6.7652 -1.7592 0.6569 40 1 8.3623 -0.2300 -0.4200 41 1 7.5998 1.3197 -2.1752 42 1 5.7421 2.0580 -3.5990 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601009184.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:59 Heat of formation + Delta-G solvation = -83.587401 kcal Electronic energy + Delta-G solvation = -28366.712761 eV Core-core repulsion = 24504.909414 eV Total energy + Delta-G solvation = -3861.803347 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.19379 -40.62914 -40.07694 -38.61164 -37.18102 -36.32366 -34.87493 -33.50693 -31.56301 -31.25929 -30.01499 -29.40807 -26.64076 -25.42210 -24.34580 -24.15208 -23.78938 -21.88368 -20.44694 -19.75687 -19.01012 -18.71667 -18.36914 -17.47756 -17.33776 -16.86743 -16.44801 -16.30958 -15.86337 -15.79927 -15.45149 -15.22427 -14.92527 -14.75627 -14.40627 -14.31389 -14.03199 -13.67580 -13.53670 -13.43162 -13.33330 -13.14177 -12.96128 -12.78226 -12.66118 -12.55290 -12.26368 -12.10635 -11.91982 -11.73660 -11.66197 -11.41136 -10.78110 -10.63456 -9.67324 -9.59541 -9.02785 -8.22864 -6.34763 -0.02695 0.25247 0.94642 1.23314 1.35889 1.39852 1.46646 1.55484 1.92831 2.17567 2.39054 2.67841 2.80538 3.07416 3.22665 3.47628 3.54226 4.01167 4.21193 4.24469 4.33055 4.42097 4.45465 4.47941 4.53495 4.66238 4.74878 4.84017 4.92246 5.00968 5.01298 5.05676 5.17555 5.20089 5.39796 5.50965 5.53182 5.58071 5.59731 5.66202 5.77002 6.04189 6.11256 6.50429 6.55364 6.71381 7.05264 7.34757 8.84828 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015371 B = 0.004830 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.123153 B = 5795.214726 C = 6232.598134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.084 3.916 3 N -0.573 5.573 4 C 0.265 3.735 5 C -0.531 4.531 6 H 0.055 0.945 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.961 3.039 10 H -0.258 1.258 11 H -0.279 1.279 12 H -0.283 1.283 13 C 0.489 3.511 14 O -0.580 6.580 15 C 0.099 3.901 16 C -0.132 4.132 17 O -0.277 6.277 18 C 0.038 3.962 19 C -0.106 4.106 20 C -0.107 4.107 21 C -0.104 4.104 22 C -0.129 4.129 23 C 0.069 3.931 24 N -0.649 5.649 25 C 0.516 3.484 26 O -0.526 6.526 27 H 0.097 0.903 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.122 0.878 31 H 0.081 0.919 32 H -0.008 1.008 33 H 0.032 0.968 34 H 0.266 0.734 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.157 0.843 39 H 0.168 0.832 40 H 0.166 0.834 41 H 0.154 0.846 42 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.062 -16.695 -8.532 21.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.037 4.037 3 N -0.302 5.302 4 C 0.144 3.856 5 C -0.569 4.569 6 H 0.073 0.927 7 C -0.189 4.189 8 N -0.568 5.568 9 Si 0.785 3.215 10 H -0.182 1.182 11 H -0.204 1.204 12 H -0.209 1.209 13 C 0.274 3.726 14 O -0.461 6.461 15 C 0.054 3.946 16 C -0.189 4.189 17 O -0.192 6.192 18 C -0.007 4.007 19 C -0.125 4.125 20 C -0.126 4.126 21 C -0.122 4.122 22 C -0.149 4.149 23 C -0.026 4.026 24 N -0.295 5.295 25 C 0.301 3.699 26 O -0.401 6.401 27 H 0.115 0.885 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.140 0.860 31 H 0.099 0.901 32 H 0.010 0.990 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.174 0.826 39 H 0.185 0.815 40 H 0.184 0.816 41 H 0.171 0.829 42 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 9.702 -15.861 -8.789 20.566 hybrid contribution -0.437 1.718 -0.034 1.773 sum 9.266 -14.143 -8.823 19.071 Atomic orbital electron populations 1.22170 0.95019 1.02761 1.02068 1.22334 0.95595 0.80594 1.05175 1.48159 1.56369 1.14911 1.10794 1.18803 0.95689 0.89681 0.81387 1.21589 1.02941 1.26903 1.05490 0.92651 1.25775 1.00866 0.97198 0.95079 1.70031 1.37649 1.38998 1.10106 0.85573 0.79918 0.78785 0.77198 1.18207 1.20380 1.20855 1.20823 0.79175 0.87767 0.84850 1.90717 1.54850 1.18281 1.82230 1.22214 0.96703 0.83650 0.92080 1.21979 0.90718 1.04655 1.01588 1.86225 1.23909 1.28479 1.80635 1.19083 0.82274 1.00529 0.98859 1.20927 0.98230 0.99731 0.93622 1.21479 0.91338 0.99579 1.00197 1.21451 1.01872 0.94266 0.94637 1.21021 0.92122 1.01897 0.99843 1.18448 0.95715 0.94271 0.94176 1.43500 1.06866 1.41955 1.37217 1.20684 0.83840 0.80545 0.84816 1.90722 1.78014 1.38935 1.32410 0.88473 0.93538 0.93585 0.86022 0.90104 0.98987 0.95037 0.92471 0.90452 0.87839 0.87247 0.82553 0.81477 0.81635 0.82857 0.73423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.88 8.79 71.98 0.63 -4.24 16 2 C 0.08 2.65 5.34 86.38 0.46 3.11 16 3 N -0.57 -24.81 2.54 -826.17 -2.10 -26.91 16 4 C 0.27 14.27 5.07 85.63 0.43 14.71 16 5 C -0.53 -30.38 8.23 25.60 0.21 -30.17 16 6 H 0.06 3.15 7.60 -2.91 -0.02 3.13 16 7 C 0.01 0.56 5.46 84.65 0.46 1.02 16 8 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 9 Si 0.96 45.31 29.54 68.60 2.03 47.33 16 10 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 13 C 0.49 22.00 6.25 87.65 0.55 22.55 16 14 O -0.58 -32.41 15.80 -3.03 -0.05 -32.46 16 15 C 0.10 3.45 0.67 -12.26 -0.01 3.44 16 16 C -0.13 -3.84 8.04 71.98 0.58 -3.26 16 17 O -0.28 -8.00 6.74 -93.65 -0.63 -8.63 16 18 C 0.04 1.04 6.11 22.58 0.14 1.17 16 19 C -0.11 -2.21 9.99 22.34 0.22 -1.99 16 20 C -0.11 -1.70 10.04 22.29 0.22 -1.47 16 21 C -0.10 -1.60 10.04 22.28 0.22 -1.38 16 22 C -0.13 -2.54 9.94 22.36 0.22 -2.32 16 23 C 0.07 1.85 6.57 38.15 0.25 2.11 16 24 N -0.65 -19.38 5.46 -302.91 -1.65 -21.03 16 25 C 0.52 18.89 6.21 87.65 0.54 19.44 16 26 O -0.53 -21.64 17.13 -3.08 -0.05 -21.69 16 27 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 28 H 0.05 1.67 7.51 -2.39 -0.02 1.66 16 29 H 0.05 1.45 7.28 -2.39 -0.02 1.43 16 30 H 0.12 3.26 3.57 -3.26 -0.01 3.24 16 31 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 32 H -0.01 -0.50 7.53 -2.39 -0.02 -0.52 16 33 H 0.03 1.70 8.07 -2.39 -0.02 1.68 16 34 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 35 H 0.08 2.54 8.08 -2.39 -0.02 2.52 16 36 H 0.10 2.46 8.13 -2.39 -0.02 2.44 16 37 H 0.11 2.69 5.02 -2.39 -0.01 2.68 16 38 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 39 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 40 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 41 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 42 H 0.42 10.43 8.87 -92.71 -0.82 9.61 16 Total: -1.00 -80.76 347.02 3.21 -77.55 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.24 Total: 18.80 kcal Atomic # 6 Polarization: 17.56 SS G_CDS: 5.14 Total: 22.71 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -3.47 Total: -103.61 kcal Atomic # 8 Polarization: -62.05 SS G_CDS: -0.73 Total: -62.78 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -80.76 3.21 -77.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601009184.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.034 kcal (2) G-P(sol) polarization free energy of solvation -80.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds