Wall clock time and date at job start Tue Mar 31 2020 12:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47212 * 2 1 4 4 O 1.21296 * 120.00098 * 0.02562 * 3 2 1 5 5 C 1.46857 * 120.00414 * 180.02562 * 3 2 1 6 6 C 1.40057 * 120.09306 * 359.72358 * 5 3 2 7 7 C 1.36608 * 119.90068 * 179.78946 * 6 5 3 8 8 C 1.39260 * 120.09702 * 0.46795 * 7 6 5 9 9 N 1.39156 * 119.90043 * 179.76216 * 8 7 6 10 10 C 1.34773 * 120.00343 * 324.35684 * 9 8 7 11 11 O 1.21356 * 119.99860 * 5.05451 * 10 9 8 12 12 C 1.49366 * 119.99917 * 185.05553 * 10 9 8 13 13 O 1.21355 * 120.00213 * 359.93155 * 12 10 9 14 14 N 1.34784 * 119.99856 * 179.97438 * 12 10 9 15 15 C 1.46498 * 120.00084 * 354.35211 * 14 12 10 16 16 C 1.46499 * 119.99911 * 174.34675 * 14 12 10 17 17 C 1.50697 * 109.46810 * 89.99815 * 16 14 12 18 18 H 1.08004 * 120.00159 * 0.02562 * 17 16 14 19 19 C 1.37878 * 119.99911 * 179.97438 * 17 16 14 20 20 N 1.31517 * 120.00130 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99946 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47100 * 90.00549 * 21 19 17 23 23 H 1.48505 * 109.47101 * 210.00020 * 21 19 17 24 24 H 1.48498 * 109.47410 * 330.00423 * 21 19 17 25 25 C 1.39257 * 120.19019 * 359.78245 * 8 7 6 26 26 C 1.36597 * 120.09822 * 359.97438 * 25 8 7 27 27 H 1.09000 * 109.47201 * 299.99585 * 1 2 3 28 28 H 1.09000 * 109.47477 * 59.99688 * 1 2 3 29 29 H 1.08999 * 109.47190 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47477 * 120.00312 * 2 1 3 31 31 H 1.09000 * 109.47201 * 240.00415 * 2 1 3 32 32 H 1.08001 * 120.05049 * 0.02562 * 6 5 3 33 33 H 1.07998 * 119.94847 * 180.20775 * 7 6 5 34 34 H 0.97004 * 119.99382 * 144.35637 * 9 8 7 35 35 H 1.08998 * 109.46965 * 84.02901 * 15 14 12 36 36 H 1.08998 * 109.47209 * 204.03436 * 15 14 12 37 37 H 1.08998 * 109.47100 * 324.03248 * 15 14 12 38 38 H 1.09000 * 109.47253 * 210.00104 * 16 14 12 39 39 H 1.08999 * 109.46937 * 330.00625 * 16 14 12 40 40 H 0.96994 * 119.99715 * 179.97438 * 20 19 17 41 41 H 1.07999 * 119.94502 * 179.97438 * 25 8 7 42 42 H 1.08001 * 120.04824 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3428 0.0005 5 6 3.4761 1.6892 -0.0006 6 6 4.3881 0.6262 0.0047 7 6 5.7303 0.8804 -0.0002 8 6 6.1922 2.1941 -0.0006 9 7 7.5604 2.4484 -0.0006 10 6 8.3962 1.6392 0.6799 11 8 7.9687 0.6380 1.2162 12 6 9.8487 1.9747 0.7739 13 8 10.2764 2.9752 0.2366 14 7 10.6845 1.1657 1.4549 15 6 10.1512 0.0264 2.2056 16 6 12.1261 1.4258 1.4441 17 6 12.4805 2.3381 2.5900 18 1 11.7090 2.6888 3.2596 19 6 13.7897 2.7243 2.7842 20 7 14.7293 2.2969 1.9692 21 14 14.2291 3.8546 4.2051 22 1 14.5523 3.0401 5.4039 23 1 15.4071 4.6798 3.8352 24 1 13.0774 4.7426 4.5057 25 6 5.2890 3.2541 -0.0006 26 6 3.9452 3.0089 -0.0007 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 4.0307 -0.3929 0.0088 33 1 6.4341 0.0613 0.0005 34 1 7.9125 3.2081 -0.4904 35 1 10.0207 -0.8222 1.5341 36 1 10.8470 -0.2428 3.0003 37 1 9.1892 0.2964 2.6411 38 1 12.6659 0.4846 1.5486 39 1 12.4026 1.9007 0.5028 40 1 15.6502 2.5689 2.1057 41 1 5.6516 4.2714 -0.0005 42 1 3.2454 3.8316 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000627451365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:30 Heat of formation + Delta-G solvation = -68.652253 kcal Electronic energy + Delta-G solvation = -25459.112922 eV Core-core repulsion = 21597.957211 eV Total energy + Delta-G solvation = -3861.155711 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.12602 -40.11338 -38.84488 -37.74053 -35.71765 -34.52890 -33.29071 -32.64436 -31.37337 -30.37887 -28.15344 -26.55715 -25.71502 -24.46100 -23.19622 -22.97317 -21.59877 -19.94125 -19.64461 -18.05635 -17.32943 -17.08791 -16.70330 -16.03678 -15.91121 -15.75477 -15.43700 -15.10616 -14.73682 -14.46963 -14.35518 -13.93081 -13.69022 -13.55000 -13.20940 -13.04525 -12.79683 -12.57409 -12.47089 -12.18749 -12.12588 -12.07587 -11.52107 -11.50737 -11.34473 -11.03152 -10.91372 -10.67432 -10.48855 -10.26001 -9.96301 -9.75000 -9.37721 -8.93365 -8.53787 -8.45561 -7.90068 -6.15048 -4.20505 0.29538 1.16799 1.62802 2.18498 2.54172 3.25294 3.31913 3.36176 3.46980 3.63909 3.72109 3.89091 4.35978 4.45456 4.62209 4.67092 4.68151 4.75480 4.87390 5.00910 5.14341 5.19878 5.24241 5.35193 5.46882 5.56794 5.71904 5.83248 5.84418 5.91755 5.99335 6.02700 6.08155 6.13593 6.39238 6.63342 6.72804 7.00766 7.18511 7.27302 7.27717 7.68560 7.81043 8.06031 8.08783 8.50841 8.83525 9.44704 10.93172 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030331 B = 0.002289 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.915474 B =12228.792826 C =12498.848117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.172 4.172 3 C 0.399 3.601 4 O -0.460 6.460 5 C -0.198 4.198 6 C -0.050 4.050 7 C -0.138 4.138 8 C 0.187 3.813 9 N -0.653 5.653 10 C 0.510 3.490 11 O -0.497 6.497 12 C 0.493 3.507 13 O -0.520 6.520 14 N -0.561 5.561 15 C 0.078 3.922 16 C 0.242 3.758 17 C -0.530 4.530 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.893 5.893 21 Si 0.901 3.099 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.274 1.274 25 C -0.158 4.158 26 C -0.039 4.039 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.148 0.852 34 H 0.426 0.574 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.047 0.953 40 H 0.265 0.735 41 H 0.135 0.865 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.629 -5.746 -5.150 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.209 4.209 3 C 0.277 3.723 4 O -0.336 6.336 5 C -0.200 4.200 6 C -0.069 4.069 7 C -0.158 4.158 8 C 0.091 3.909 9 N -0.299 5.299 10 C 0.294 3.706 11 O -0.371 6.371 12 C 0.273 3.727 13 O -0.397 6.397 14 N -0.292 5.292 15 C -0.065 4.065 16 C 0.124 3.876 17 C -0.569 4.569 18 H 0.078 0.922 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.729 3.271 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.178 4.178 26 C -0.057 4.057 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.153 0.847 33 H 0.165 0.835 34 H 0.265 0.735 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.153 0.847 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.779 -5.465 -5.039 23.961 hybrid contribution 0.723 0.902 0.618 1.311 sum -22.056 -4.563 -4.421 22.953 Atomic orbital electron populations 1.21592 0.93691 1.01790 1.03051 1.21998 0.98308 0.95861 1.04730 1.22407 0.87809 0.91177 0.70861 1.90518 1.58445 1.47792 1.36816 1.20478 0.94895 0.94393 1.10225 1.21079 0.92310 0.98715 0.94828 1.21099 0.96313 0.96100 1.02298 1.18123 0.82826 0.94088 0.95864 1.43268 1.04587 1.31963 1.50128 1.21087 0.88682 0.82938 0.77873 1.90676 1.77949 1.24891 1.43546 1.19468 0.85395 0.85116 0.82676 1.90759 1.76666 1.24997 1.47271 1.48148 1.09752 1.26342 1.44954 1.22058 1.00220 0.88059 0.96210 1.19542 0.71536 0.97486 0.99029 1.21358 0.93408 1.29758 1.12354 0.92231 1.24936 0.96122 0.96230 0.96732 1.69922 1.01234 1.44824 1.37164 0.86441 0.78092 0.80619 0.81963 1.20520 1.20997 1.19836 1.20745 0.92783 0.98691 1.05628 1.20933 0.94911 0.96267 0.93632 0.92136 0.92166 0.92043 0.88230 0.88277 0.84732 0.83467 0.73548 0.93047 0.90938 0.90026 0.94029 0.93482 0.92532 0.84689 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.20 37.16 0.34 -0.60 16 2 C -0.17 -1.07 5.02 -27.89 -0.14 -1.21 16 3 C 0.40 3.79 7.11 -30.82 -0.22 3.57 16 4 O -0.46 -5.70 15.96 5.54 0.09 -5.61 16 5 C -0.20 -1.94 5.87 -105.05 -0.62 -2.55 16 6 C -0.05 -0.45 9.42 -39.49 -0.37 -0.82 16 7 C -0.14 -1.53 8.62 -39.79 -0.34 -1.88 16 8 C 0.19 2.19 6.29 -83.78 -0.53 1.66 16 9 N -0.65 -8.47 5.29 -10.28 -0.05 -8.52 16 10 C 0.51 8.13 7.60 -11.63 -0.09 8.04 16 11 O -0.50 -7.93 10.69 5.49 0.06 -7.88 16 12 C 0.49 9.83 7.72 -11.62 -0.09 9.74 16 13 O -0.52 -11.74 16.12 5.49 0.09 -11.65 16 14 N -0.56 -11.73 2.86 -183.51 -0.52 -12.26 16 15 C 0.08 1.32 9.27 59.85 0.55 1.88 16 16 C 0.24 6.09 5.09 -5.20 -0.03 6.06 16 17 C -0.53 -14.57 9.39 -34.44 -0.32 -14.90 16 18 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 21 Si 0.90 21.35 29.54 -169.99 -5.02 16.32 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 C -0.16 -1.61 9.90 -39.80 -0.39 -2.00 16 26 C -0.04 -0.39 9.54 -39.49 -0.38 -0.77 16 27 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 28 H 0.06 0.44 8.10 -51.93 -0.42 0.01 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.10 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.10 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.13 0.81 7.03 -52.49 -0.37 0.44 16 33 H 0.15 1.74 6.23 -52.49 -0.33 1.41 16 34 H 0.43 4.99 8.30 -40.82 -0.34 4.65 16 35 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 36 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 37 H 0.08 1.34 5.84 -51.93 -0.30 1.04 16 38 H 0.04 1.05 8.07 -51.93 -0.42 0.63 16 39 H 0.05 1.30 7.51 -51.93 -0.39 0.91 16 40 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.14 1.28 7.64 -52.49 -0.40 0.88 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -32.31 362.02 -7.35 -39.66 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.46 Total: 1.55 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -2.72 Total: 7.86 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.16 Total: -45.71 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: 0.24 Total: -25.14 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.31 -7.35 -39.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000627451365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.993 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds