Wall clock time and date at job start Tue Mar 31 2020 12:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47212 * 2 1 4 4 O 1.21296 * 120.00098 * 0.02562 * 3 2 1 5 5 C 1.46857 * 120.00414 * 180.02562 * 3 2 1 6 6 C 1.40057 * 120.09306 * 359.72358 * 5 3 2 7 7 C 1.36608 * 119.90068 * 179.78946 * 6 5 3 8 8 C 1.39260 * 120.09702 * 0.46795 * 7 6 5 9 9 N 1.39156 * 119.90043 * 179.76216 * 8 7 6 10 10 C 1.34773 * 120.00343 * 324.35684 * 9 8 7 11 11 O 1.21356 * 119.99860 * 5.05451 * 10 9 8 12 12 C 1.49366 * 119.99917 * 185.05553 * 10 9 8 13 13 O 1.21355 * 120.00213 * 359.93155 * 12 10 9 14 14 N 1.34784 * 119.99856 * 179.97438 * 12 10 9 15 15 C 1.46498 * 120.00084 * 354.35211 * 14 12 10 16 16 C 1.46499 * 119.99911 * 174.34675 * 14 12 10 17 17 C 1.50697 * 109.46810 * 89.99815 * 16 14 12 18 18 H 1.08004 * 120.00159 * 0.02562 * 17 16 14 19 19 C 1.37878 * 119.99911 * 179.97438 * 17 16 14 20 20 N 1.31517 * 120.00130 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99946 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47100 * 90.00549 * 21 19 17 23 23 H 1.48505 * 109.47101 * 210.00020 * 21 19 17 24 24 H 1.48498 * 109.47410 * 330.00423 * 21 19 17 25 25 C 1.39257 * 120.19019 * 359.78245 * 8 7 6 26 26 C 1.36597 * 120.09822 * 359.97438 * 25 8 7 27 27 H 1.09000 * 109.47201 * 299.99585 * 1 2 3 28 28 H 1.09000 * 109.47477 * 59.99688 * 1 2 3 29 29 H 1.08999 * 109.47190 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47477 * 120.00312 * 2 1 3 31 31 H 1.09000 * 109.47201 * 240.00415 * 2 1 3 32 32 H 1.08001 * 120.05049 * 0.02562 * 6 5 3 33 33 H 1.07998 * 119.94847 * 180.20775 * 7 6 5 34 34 H 0.97004 * 119.99382 * 144.35637 * 9 8 7 35 35 H 1.08998 * 109.46965 * 84.02901 * 15 14 12 36 36 H 1.08998 * 109.47209 * 204.03436 * 15 14 12 37 37 H 1.08998 * 109.47100 * 324.03248 * 15 14 12 38 38 H 1.09000 * 109.47253 * 210.00104 * 16 14 12 39 39 H 1.08999 * 109.46937 * 330.00625 * 16 14 12 40 40 H 0.96994 * 119.99715 * 179.97438 * 20 19 17 41 41 H 1.07999 * 119.94502 * 179.97438 * 25 8 7 42 42 H 1.08001 * 120.04824 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3428 0.0005 5 6 3.4761 1.6892 -0.0006 6 6 4.3881 0.6262 0.0047 7 6 5.7303 0.8804 -0.0002 8 6 6.1922 2.1941 -0.0006 9 7 7.5604 2.4484 -0.0006 10 6 8.3962 1.6392 0.6799 11 8 7.9687 0.6380 1.2162 12 6 9.8487 1.9747 0.7739 13 8 10.2764 2.9752 0.2366 14 7 10.6845 1.1657 1.4549 15 6 10.1512 0.0264 2.2056 16 6 12.1261 1.4258 1.4441 17 6 12.4805 2.3381 2.5900 18 1 11.7090 2.6888 3.2596 19 6 13.7897 2.7243 2.7842 20 7 14.7293 2.2969 1.9692 21 14 14.2291 3.8546 4.2051 22 1 14.5523 3.0401 5.4039 23 1 15.4071 4.6798 3.8352 24 1 13.0774 4.7426 4.5057 25 6 5.2890 3.2541 -0.0006 26 6 3.9452 3.0089 -0.0007 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 4.0307 -0.3929 0.0088 33 1 6.4341 0.0613 0.0005 34 1 7.9125 3.2081 -0.4904 35 1 10.0207 -0.8222 1.5341 36 1 10.8470 -0.2428 3.0003 37 1 9.1892 0.2964 2.6411 38 1 12.6659 0.4846 1.5486 39 1 12.4026 1.9007 0.5028 40 1 15.6502 2.5689 2.1057 41 1 5.6516 4.2714 -0.0005 42 1 3.2454 3.8316 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000627451365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:29 Heat of formation + Delta-G solvation = -88.840712 kcal Electronic energy + Delta-G solvation = -25459.988359 eV Core-core repulsion = 21597.957211 eV Total energy + Delta-G solvation = -3862.031148 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.29322 -41.05205 -40.05136 -38.91390 -37.17013 -35.84862 -34.67112 -33.87608 -32.14288 -31.27380 -30.05720 -27.89679 -26.87987 -25.82690 -24.33181 -23.90185 -22.80209 -20.99656 -20.63652 -19.16814 -18.75242 -18.59427 -17.98189 -17.36821 -17.19231 -16.88405 -16.39594 -16.37450 -16.15339 -15.58880 -15.36893 -15.01566 -14.87320 -14.52065 -14.33754 -14.20783 -13.95402 -13.82693 -13.66633 -13.52783 -13.24405 -13.08795 -12.95518 -12.65521 -12.61948 -12.32087 -12.26769 -12.20594 -11.99108 -11.76220 -11.49615 -10.71912 -10.65814 -10.42898 -10.10014 -9.66432 -9.34479 -8.25720 -6.39908 -0.55994 0.32811 0.39012 1.19666 1.38250 1.40073 1.42950 1.51285 2.09640 2.35786 2.54124 2.77264 3.04999 3.06305 3.23223 3.75212 3.88419 4.06716 4.24443 4.24973 4.31497 4.34449 4.43315 4.48099 4.69498 4.81125 4.85214 4.93435 4.98894 5.04645 5.08521 5.09276 5.13240 5.15539 5.26904 5.34097 5.37930 5.42128 5.67583 5.80091 5.89704 5.98096 6.33562 6.56884 6.60266 6.67089 6.94729 7.30357 8.81772 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030331 B = 0.002289 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.915474 B =12228.792826 C =12498.848117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.168 4.168 3 C 0.399 3.601 4 O -0.496 6.496 5 C -0.200 4.200 6 C -0.038 4.038 7 C -0.146 4.146 8 C 0.164 3.836 9 N -0.639 5.639 10 C 0.523 3.477 11 O -0.496 6.496 12 C 0.487 3.513 13 O -0.555 6.555 14 N -0.571 5.571 15 C 0.081 3.919 16 C 0.256 3.744 17 C -0.546 4.546 18 H 0.053 0.947 19 C 0.012 3.988 20 N -0.924 5.924 21 Si 0.967 3.033 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.274 1.274 25 C -0.153 4.153 26 C -0.049 4.049 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.170 0.830 33 H 0.142 0.858 34 H 0.430 0.570 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.036 0.964 39 H 0.013 0.987 40 H 0.269 0.731 41 H 0.149 0.851 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.327 -6.761 -4.451 25.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C 0.280 3.720 4 O -0.374 6.374 5 C -0.202 4.202 6 C -0.056 4.056 7 C -0.166 4.166 8 C 0.069 3.931 9 N -0.286 5.286 10 C 0.306 3.694 11 O -0.371 6.371 12 C 0.269 3.731 13 O -0.434 6.434 14 N -0.302 5.302 15 C -0.061 4.061 16 C 0.136 3.864 17 C -0.584 4.584 18 H 0.071 0.929 19 C -0.188 4.188 20 N -0.563 5.563 21 Si 0.792 3.208 22 H -0.190 1.190 23 H -0.205 1.205 24 H -0.199 1.199 25 C -0.173 4.173 26 C -0.067 4.067 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.188 0.812 33 H 0.160 0.840 34 H 0.270 0.730 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.054 0.946 39 H 0.031 0.969 40 H 0.078 0.922 41 H 0.167 0.833 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -24.524 -6.504 -4.344 25.741 hybrid contribution 1.138 1.205 0.334 1.691 sum -23.386 -5.299 -4.010 24.312 Atomic orbital electron populations 1.21609 0.94120 1.02744 1.01799 1.22086 0.97927 0.93655 1.06858 1.22901 0.87306 0.92410 0.69382 1.90516 1.59088 1.49190 1.38615 1.20720 0.95508 0.94508 1.09458 1.21355 0.91097 1.00163 0.92995 1.21176 0.97219 0.95568 1.02672 1.18298 0.81859 0.95040 0.97856 1.43061 1.05025 1.31312 1.49171 1.20079 0.86903 0.83565 0.78885 1.90671 1.77390 1.24927 1.44092 1.20153 0.87239 0.84237 0.81472 1.90727 1.77911 1.26417 1.48372 1.48122 1.08463 1.27734 1.45884 1.22204 1.00262 0.87348 0.96296 1.19057 0.74322 0.96398 0.96656 1.21608 0.93596 1.30346 1.12895 0.92886 1.25801 0.96041 0.97629 0.99307 1.70025 1.01647 1.45887 1.38713 0.85416 0.77676 0.78657 0.79075 1.19015 1.20476 1.19855 1.20854 0.92586 0.99090 1.04796 1.21096 0.94911 0.96950 0.93775 0.93532 0.93376 0.89932 0.86034 0.85769 0.81248 0.84040 0.73018 0.90955 0.91064 0.89029 0.94591 0.96914 0.92213 0.83336 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.20 71.98 0.66 -0.93 16 2 C -0.17 -1.54 5.02 29.85 0.15 -1.39 16 3 C 0.40 6.76 7.11 27.94 0.20 6.95 16 4 O -0.50 -11.89 15.96 -3.08 -0.05 -11.94 16 5 C -0.20 -3.46 5.87 -20.14 -0.12 -3.58 16 6 C -0.04 -0.56 9.42 22.33 0.21 -0.35 16 7 C -0.15 -2.93 8.62 22.13 0.19 -2.74 16 8 C 0.16 3.61 6.29 38.47 0.24 3.85 16 9 N -0.64 -16.07 5.29 -304.78 -1.61 -17.68 16 10 C 0.52 16.30 7.60 87.24 0.66 16.96 16 11 O -0.50 -15.08 10.69 -3.27 -0.03 -15.12 16 12 C 0.49 19.65 7.72 87.24 0.67 20.33 16 13 O -0.55 -25.81 16.12 -3.26 -0.05 -25.86 16 14 N -0.57 -24.19 2.86 -852.84 -2.44 -26.63 16 15 C 0.08 2.67 9.27 127.77 1.18 3.86 16 16 C 0.26 13.26 5.09 85.63 0.44 13.69 16 17 C -0.55 -30.53 9.39 25.60 0.24 -30.29 16 18 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 19 C 0.01 0.67 5.46 84.65 0.46 1.13 16 20 N -0.92 -53.83 13.29 21.45 0.28 -53.55 16 21 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 25 C -0.15 -2.91 9.90 22.13 0.22 -2.69 16 26 C -0.05 -0.91 9.54 22.33 0.21 -0.70 16 27 H 0.05 0.63 8.10 -2.39 -0.02 0.61 16 28 H 0.05 0.63 8.10 -2.39 -0.02 0.62 16 29 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.12 0.65 8.08 -2.39 -0.02 0.63 16 31 H 0.12 0.57 8.09 -2.39 -0.02 0.55 16 32 H 0.17 1.26 7.03 -2.91 -0.02 1.24 16 33 H 0.14 3.04 6.23 -2.91 -0.02 3.02 16 34 H 0.43 9.95 8.30 -92.70 -0.77 9.18 16 35 H 0.07 2.09 8.13 -2.39 -0.02 2.07 16 36 H 0.07 2.36 8.03 -2.39 -0.02 2.34 16 37 H 0.09 2.87 5.84 -2.39 -0.01 2.86 16 38 H 0.04 1.88 8.07 -2.39 -0.02 1.86 16 39 H 0.01 0.74 7.51 -2.39 -0.02 0.72 16 40 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 41 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 42 H 0.14 2.50 7.64 -2.91 -0.02 2.48 16 Total: -1.00 -70.91 362.02 4.04 -66.87 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.29 Total: 14.00 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: 5.63 Total: 24.12 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -3.76 Total: -97.86 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -0.14 Total: -52.93 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -70.91 4.04 -66.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000627451365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.974 kcal (2) G-P(sol) polarization free energy of solvation -70.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds